Wall clock time and date at job start Mon Mar 30 2020 07:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00462 * 3 2 1 5 5 H 1.48500 * 109.46715 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.47234 * 149.99792 * 3 2 1 7 7 C 1.37880 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47389 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47344 * 179.97438 * 10 9 7 12 12 C 1.46844 * 110.99981 * 37.89531 * 11 10 9 13 13 C 1.53040 * 109.52250 * 185.84318 * 12 11 10 14 14 C 1.53119 * 109.27715 * 300.81548 * 13 12 11 15 15 C 1.53123 * 109.15712 * 57.65703 * 14 13 12 16 16 C 1.46841 * 111.00236 * 162.10700 * 11 10 9 17 17 H 1.09004 * 109.45094 * 294.17069 * 16 11 10 18 18 C 1.53003 * 109.46700 * 54.14274 * 16 11 10 19 19 H 1.08997 * 110.43000 * 49.73269 * 18 16 11 20 20 C 1.54891 * 110.59792 * 287.12124 * 18 16 11 21 21 C 1.54886 * 102.75006 * 203.31957 * 20 18 16 22 22 C 1.54269 * 104.19555 * 37.93945 * 21 20 18 23 23 C 1.53876 * 106.59750 * 336.39382 * 22 21 20 24 24 H 1.08997 * 110.07370 * 240.68598 * 23 22 21 25 25 O 1.42907 * 110.03119 * 119.27982 * 23 22 21 26 26 H 0.96991 * 119.99788 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47080 * 59.99840 * 9 7 2 28 28 H 1.08998 * 109.47094 * 300.00214 * 9 7 2 29 29 H 1.09009 * 109.46884 * 59.99947 * 10 9 7 30 30 H 1.08998 * 109.47113 * 300.00124 * 10 9 7 31 31 H 1.08996 * 109.46391 * 65.82171 * 12 11 10 32 32 H 1.09000 * 109.45544 * 305.84653 * 12 11 10 33 33 H 1.09000 * 109.50313 * 180.88058 * 13 12 11 34 34 H 1.08997 * 109.50553 * 60.76246 * 13 12 11 35 35 H 1.09007 * 109.52389 * 297.75590 * 14 13 12 36 36 H 1.08998 * 109.57729 * 177.59321 * 14 13 12 37 37 H 1.09004 * 109.49960 * 182.40266 * 15 14 13 38 38 H 1.08994 * 109.50301 * 62.28965 * 15 14 13 39 39 H 1.09004 * 110.75875 * 321.63874 * 20 18 16 40 40 H 1.09000 * 110.75430 * 84.81989 * 20 18 16 41 41 H 1.09002 * 110.48605 * 156.62064 * 21 20 18 42 42 H 1.08999 * 110.48749 * 279.13357 * 21 20 18 43 43 H 1.08990 * 110.03604 * 217.10552 * 22 21 20 44 44 H 1.09005 * 110.02736 * 95.67533 * 22 21 20 45 45 H 0.96698 * 113.99555 * 62.83534 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5109 -4.9343 0.0001 12 6 0.3106 -4.8494 -0.8416 13 6 -0.5037 -6.1376 -0.7025 14 6 0.3582 -7.3291 -1.1291 15 6 1.6249 -7.3663 -0.2695 16 6 2.3774 -6.0424 -0.4211 17 1 2.6625 -5.9041 -1.4640 18 6 3.6338 -6.0674 0.4518 19 1 3.3648 -6.0220 1.5071 20 6 4.5776 -4.8962 0.0821 21 6 5.9582 -5.4035 0.5674 22 6 5.9461 -6.9099 0.2347 23 6 4.4682 -7.3319 0.1612 24 1 4.2599 -8.0968 0.9092 25 8 4.1654 -7.8288 -1.1441 26 1 -0.4849 0.8400 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6248 -2.5571 0.8896 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6043 -0.8905 31 1 0.6055 -4.7167 -1.8824 32 1 -0.2956 -4.0006 -0.5249 33 1 -1.3865 -6.0807 -1.3393 34 1 -0.8108 -6.2637 0.3357 35 1 0.6332 -7.2226 -2.1785 36 1 -0.2027 -8.2535 -0.9915 37 1 2.2629 -8.1872 -0.5970 38 1 1.3514 -7.5118 0.7755 39 1 4.5838 -4.7304 -0.9952 40 1 4.2897 -3.9869 0.6097 41 1 6.7607 -4.9001 0.0282 42 1 6.0656 -5.2489 1.6410 43 1 6.4557 -7.4696 1.0189 44 1 6.4324 -7.0841 -0.7252 45 1 4.6589 -8.6244 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124984152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:50 Heat of formation + Delta-G solvation = -81.051259 kcal Electronic energy + Delta-G solvation = -22095.180218 eV Core-core repulsion = 19110.794986 eV Total energy + Delta-G solvation = -2984.385231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15571 -38.80817 -36.17757 -35.62532 -34.23503 -32.75369 -30.77170 -28.90000 -28.32739 -26.71391 -24.94169 -23.33685 -21.95631 -21.47656 -20.65666 -20.35327 -18.70319 -18.05226 -16.80810 -16.54430 -16.46823 -15.78150 -15.57765 -15.55350 -15.15784 -14.55710 -14.28428 -14.14617 -14.02591 -13.83287 -13.72213 -13.21185 -13.03434 -12.90938 -12.53419 -12.39205 -12.24427 -12.08071 -11.93549 -11.90097 -11.61694 -11.48555 -11.35825 -11.25878 -11.21771 -10.82601 -10.69919 -10.61064 -10.51197 -9.08423 -8.21426 -6.32809 1.37674 1.39408 1.50614 2.38717 3.06962 3.11575 3.41876 3.64884 3.75236 3.93043 4.03528 4.13880 4.18939 4.31291 4.46200 4.47593 4.52018 4.54778 4.58568 4.62115 4.69460 4.80774 4.86330 4.93339 4.97862 5.01490 5.02801 5.08541 5.11671 5.19863 5.24157 5.25239 5.32587 5.36720 5.42546 5.45469 5.49789 5.58325 5.68848 5.79355 6.11191 6.37863 6.46285 6.83664 7.07714 7.36120 8.90641 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018474 B = 0.005933 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.302064 B = 4718.005095 C = 6052.092210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.078 3.922 11 N -0.541 5.541 12 C 0.054 3.946 13 C -0.111 4.111 14 C -0.114 4.114 15 C -0.105 4.105 16 C 0.109 3.891 17 H 0.016 0.984 18 C -0.079 4.079 19 H 0.085 0.915 20 C -0.135 4.135 21 C -0.122 4.122 22 C -0.147 4.147 23 C 0.115 3.885 24 H 0.076 0.924 25 O -0.571 6.571 26 H 0.264 0.736 27 H -0.006 1.006 28 H -0.008 1.008 29 H 0.074 0.926 30 H 0.015 0.985 31 H 0.008 0.992 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.400 -18.997 0.018 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.049 4.049 11 N -0.266 5.266 12 C -0.074 4.074 13 C -0.149 4.149 14 C -0.152 4.152 15 C -0.142 4.142 16 C 0.001 3.999 17 H 0.034 0.966 18 C -0.098 4.098 19 H 0.103 0.897 20 C -0.172 4.172 21 C -0.160 4.160 22 C -0.185 4.185 23 C 0.056 3.944 24 H 0.094 0.906 25 O -0.379 6.379 26 H 0.072 0.928 27 H 0.013 0.987 28 H 0.010 0.990 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 8.709 -18.487 0.496 20.441 hybrid contribution 0.583 1.281 -0.974 1.712 sum 9.291 -17.205 -0.478 19.560 Atomic orbital electron populations 1.70105 1.07803 1.27756 1.51477 1.25955 0.95752 1.03269 0.94598 0.85450 0.78749 0.78404 0.78472 1.19863 1.20533 1.18625 1.21602 0.93418 0.92263 1.50836 0.92355 1.19162 0.94421 0.92657 0.94820 1.22382 0.95692 0.88077 0.98734 1.62159 1.07348 1.04245 1.52881 1.22095 0.92755 0.99076 0.93474 1.21594 0.97774 0.93510 1.01996 1.21553 0.96575 0.97963 0.99073 1.21739 0.96318 0.96329 0.99860 1.21403 0.91764 0.91318 0.95393 0.96555 1.22080 0.93450 0.94560 0.99736 0.89714 1.23031 0.95859 0.98383 0.99953 1.22333 0.96208 0.96127 1.01321 1.22876 0.96587 0.96061 1.02978 1.22318 0.92865 0.94326 0.84932 0.90577 1.86612 1.68596 1.48920 1.33764 0.92755 0.98737 0.98996 0.90839 0.96670 0.97353 0.92529 0.90997 0.91514 0.93160 0.89933 0.88173 0.92253 0.93632 0.91690 0.91609 0.90941 0.89420 0.90555 0.76094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 7 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.49 3.86 29.85 0.12 1.61 16 10 C 0.08 3.56 3.53 86.30 0.31 3.86 16 11 N -0.54 -21.44 4.69 -871.14 -4.08 -25.53 16 12 C 0.05 2.17 4.57 86.33 0.39 2.56 16 13 C -0.11 -3.41 6.09 30.65 0.19 -3.22 16 14 C -0.11 -2.95 6.00 30.68 0.18 -2.77 16 15 C -0.11 -2.76 4.89 30.65 0.15 -2.61 16 16 C 0.11 3.53 1.09 44.94 0.05 3.58 16 17 H 0.02 0.61 7.64 -2.38 -0.02 0.60 16 18 C -0.08 -2.21 2.31 -9.72 -0.02 -2.23 16 19 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 20 C -0.13 -4.07 4.41 31.88 0.14 -3.93 16 21 C -0.12 -2.73 6.83 31.67 0.22 -2.51 16 22 C -0.15 -2.52 6.61 31.32 0.21 -2.31 16 23 C 0.11 2.24 3.40 31.32 0.11 2.35 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 25 O -0.57 -10.97 9.78 -148.98 -1.46 -12.43 16 26 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 27 H -0.01 -0.34 6.33 -2.39 -0.02 -0.35 16 28 H -0.01 -0.51 8.13 -2.39 -0.02 -0.53 16 29 H 0.07 3.28 5.60 -2.38 -0.01 3.27 16 30 H 0.02 0.71 6.53 -2.39 -0.02 0.69 16 31 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.06 2.63 5.88 -2.39 -0.01 2.61 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 2.26 5.54 -2.39 -0.01 2.24 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.04 1.54 7.39 -2.38 -0.02 1.52 16 40 H 0.06 2.27 5.14 -2.39 -0.01 2.26 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.23 7.96 -2.38 -0.02 1.21 16 45 H 0.39 3.74 9.11 -74.06 -0.67 3.06 16 Total: -1.00 -69.00 327.64 -0.22 -69.22 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.28 Total: 16.16 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 2.73 Total: -36.91 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -3.80 Total: -83.43 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -1.46 Total: -12.43 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.00 -0.22 -69.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124984152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.835 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds