Wall clock time and date at job start Mon Mar 30 2020 07:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46839 * 111.00175 * 45.79285 * 11 10 9 13 13 C 1.53038 * 109.52321 * 185.83828 * 12 11 10 14 14 C 1.53111 * 109.28032 * 300.82001 * 13 12 11 15 15 C 1.52994 * 109.52438 * 177.55857 * 14 13 12 16 16 C 1.53182 * 109.54612 * 179.87253 * 15 14 13 17 17 C 1.53089 * 109.16562 * 183.15486 * 16 15 14 18 18 O 1.42901 * 109.41627 * 57.60857 * 17 16 15 19 19 C 1.42905 * 114.09538 * 298.84395 * 18 17 16 20 20 C 1.53089 * 109.41695 * 61.15900 * 19 18 17 21 21 C 1.53117 * 109.16032 * 57.65459 * 14 13 12 22 22 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 23 23 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.09000 * 109.46389 * 305.85096 * 12 11 10 29 29 H 1.08998 * 109.46466 * 65.81826 * 12 11 10 30 30 H 1.09001 * 109.50415 * 180.87699 * 13 12 11 31 31 H 1.09005 * 109.50244 * 60.76180 * 13 12 11 32 32 H 1.09008 * 109.57727 * 297.72064 * 14 13 12 33 33 H 1.08999 * 109.54559 * 300.13780 * 15 14 13 34 34 H 1.09004 * 109.52303 * 303.06369 * 16 15 14 35 35 H 1.08998 * 109.52284 * 63.24646 * 16 15 14 36 36 H 1.09002 * 109.48084 * 297.62350 * 17 16 15 37 37 H 1.09002 * 109.47839 * 177.59154 * 17 16 15 38 38 H 1.09003 * 109.48013 * 301.17173 * 19 18 17 39 39 H 1.09003 * 109.48561 * 181.14736 * 19 18 17 40 40 H 1.08996 * 109.51877 * 182.48325 * 20 19 18 41 41 H 1.08995 * 109.52172 * 62.29583 * 20 19 18 42 42 H 1.09006 * 109.50431 * 182.40729 * 21 14 13 43 43 H 1.08995 * 109.53846 * 62.30837 * 21 14 13 44 44 H 1.08992 * 109.46356 * 294.17825 * 22 11 10 45 45 H 1.09007 * 109.46137 * 54.15905 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.4204 -4.9118 -0.9842 13 6 -0.4100 -6.1910 -0.8561 14 6 0.4919 -7.4051 -1.0943 15 6 -0.3190 -8.6889 -0.9077 16 6 0.5820 -9.9040 -1.1490 17 6 -0.2553 -11.1807 -1.0378 18 8 -1.3298 -11.1276 -1.9785 19 6 -2.2321 -10.0387 -1.7726 20 6 -1.4741 -8.7161 -1.9134 21 6 1.6464 -7.3785 -0.0889 22 6 2.4172 -6.0650 -0.2392 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 -0.8905 27 1 2.8721 -3.6043 0.8895 28 1 -0.2160 -4.0460 -0.8010 29 1 0.8383 -4.8491 -1.9889 30 1 -1.2100 -6.1811 -1.5964 31 1 -0.8396 -6.2474 0.1441 32 1 0.8910 -7.3704 -2.1081 33 1 -0.7174 -8.7245 0.1062 34 1 1.0195 -9.8409 -2.1455 35 1 1.3759 -9.9228 -0.4023 36 1 -0.6593 -11.2637 -0.0288 37 1 0.3718 -12.0464 -1.2508 38 1 -2.6619 -10.1068 -0.7732 39 1 -3.0292 -10.0817 -2.5149 40 1 -2.1509 -7.8854 -1.7133 41 1 -1.0783 -8.6290 -2.9252 42 1 2.3157 -8.2172 -0.2810 43 1 1.2499 -7.4540 0.9236 44 1 2.8258 -5.9969 -1.2474 45 1 3.2312 -6.0367 0.4853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153770297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:13 Heat of formation + Delta-G solvation = -73.749305 kcal Electronic energy + Delta-G solvation = -21045.696799 eV Core-core repulsion = 18061.628204 eV Total energy + Delta-G solvation = -2984.068595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01171 -38.42038 -35.53495 -33.22184 -31.68540 -31.53984 -30.41268 -28.91370 -25.93481 -24.19050 -23.95569 -22.56716 -22.00291 -20.32444 -19.90983 -19.27690 -16.62764 -16.31069 -16.17147 -15.39338 -14.94127 -14.61623 -14.52859 -14.19572 -14.11340 -13.86565 -13.68033 -13.03105 -12.63734 -12.57535 -12.48991 -12.13944 -11.65930 -11.49951 -11.39661 -11.23721 -11.02255 -10.91398 -10.83141 -10.56640 -10.50928 -10.46064 -10.14461 -10.00482 -9.79539 -9.56087 -9.25467 -9.05537 -8.33952 -7.64037 -6.00468 -4.02750 3.33077 3.37350 3.39846 3.68631 4.40267 4.50114 4.50529 4.59905 4.69449 4.83002 4.98822 5.07874 5.17998 5.23447 5.30571 5.35439 5.36679 5.48106 5.52549 5.58790 5.67194 5.74597 5.77134 5.81574 5.91348 5.94188 5.97649 6.09159 6.17071 6.18273 6.24231 6.35616 6.38822 6.47711 6.63766 6.67026 6.94960 6.99481 7.54715 7.65436 7.83163 7.86619 8.05810 8.43331 9.03703 9.60849 11.10904 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046332 B = 0.003292 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.182647 B = 8503.530248 C = 8968.053435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.022 3.978 10 C 0.062 3.938 11 N -0.539 5.539 12 C 0.051 3.949 13 C -0.111 4.111 14 C -0.080 4.080 15 C -0.082 4.082 16 C -0.152 4.152 17 C 0.060 3.940 18 O -0.387 6.387 19 C 0.060 3.940 20 C -0.153 4.153 21 C -0.109 4.109 22 C 0.055 3.945 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.024 0.976 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.023 0.977 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.024 0.976 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 -20.865 -2.468 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.065 4.065 11 N -0.264 5.264 12 C -0.077 4.077 13 C -0.148 4.148 14 C -0.099 4.099 15 C -0.101 4.101 16 C -0.189 4.189 17 C -0.016 4.016 18 O -0.306 6.306 19 C -0.016 4.016 20 C -0.190 4.190 21 C -0.147 4.147 22 C -0.074 4.074 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.992 -20.936 -2.152 21.140 hybrid contribution 0.952 1.365 -0.591 1.766 sum -1.040 -19.571 -2.743 19.789 Atomic orbital electron populations 1.69949 1.06016 1.26721 1.50640 1.24989 0.94847 0.99182 0.95279 0.86650 0.79579 0.83111 0.78604 1.20302 1.21260 1.20212 1.21161 0.92977 0.91064 1.50919 0.92835 1.19234 0.94107 0.90500 0.97723 1.22307 0.97007 0.88308 0.98848 1.62046 1.11608 1.03458 1.49252 1.22181 0.94160 0.98414 0.92956 1.21696 0.97470 0.93718 1.01960 1.21220 0.95671 0.93765 0.99233 1.21226 0.95240 0.94384 0.99237 1.22291 0.98828 0.94882 1.02941 1.22584 0.88607 0.97956 0.92491 1.87910 1.39053 1.48873 1.54753 1.22599 0.91817 0.86118 1.01110 1.22295 0.98293 0.98052 1.00398 1.21652 0.96778 0.96477 0.99759 1.22040 0.95124 0.91307 0.98915 0.92929 0.96172 0.95734 0.96402 0.92043 0.88889 0.95829 0.91926 0.91338 0.91750 0.91037 0.91174 0.90605 0.93347 0.89189 0.93308 0.89088 0.90346 0.91135 0.92125 0.91325 0.95778 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.56 4.22 -27.88 -0.12 0.44 16 10 C 0.06 1.34 5.21 -3.82 -0.02 1.32 16 11 N -0.54 -9.96 4.81 -234.67 -1.13 -11.09 16 12 C 0.05 0.89 4.85 -3.84 -0.02 0.88 16 13 C -0.11 -1.52 4.96 -26.65 -0.13 -1.66 16 14 C -0.08 -0.95 1.84 -90.50 -0.17 -1.11 16 15 C -0.08 -0.82 1.86 -90.44 -0.17 -0.98 16 16 C -0.15 -1.36 4.98 -26.59 -0.13 -1.49 16 17 C 0.06 0.52 6.84 37.20 0.25 0.78 16 18 O -0.39 -4.16 10.77 -35.23 -0.38 -4.54 16 19 C 0.06 0.54 6.84 37.20 0.25 0.80 16 20 C -0.15 -1.45 4.98 -26.59 -0.13 -1.58 16 21 C -0.11 -1.33 4.96 -26.65 -0.13 -1.46 16 22 C 0.05 0.83 5.42 -3.83 -0.02 0.81 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.02 0.55 6.21 -51.93 -0.32 0.23 16 25 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 28 H 0.09 1.88 5.81 -51.93 -0.30 1.58 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.78 6.66 -51.93 -0.35 0.44 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.62 6.69 -51.93 -0.35 0.27 16 36 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.72 6.69 -51.93 -0.35 0.38 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.63 6.67 -51.93 -0.35 0.28 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -30.18 336.24 -9.98 -40.16 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.31 Total: -3.27 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.94 Total: -16.91 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.39 Total: -37.24 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.38 Total: -4.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.18 -9.98 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153770297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.589 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds