Wall clock time and date at job start Mon Mar 30 2020 07:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46839 * 111.00175 * 45.79285 * 11 10 9 13 13 C 1.53038 * 109.52321 * 185.83828 * 12 11 10 14 14 C 1.53111 * 109.28032 * 300.82001 * 13 12 11 15 15 C 1.52994 * 109.52438 * 177.55857 * 14 13 12 16 16 C 1.53182 * 109.54612 * 179.87253 * 15 14 13 17 17 C 1.53089 * 109.16562 * 183.15486 * 16 15 14 18 18 O 1.42901 * 109.41627 * 57.60857 * 17 16 15 19 19 C 1.42905 * 114.09538 * 298.84395 * 18 17 16 20 20 C 1.53089 * 109.41695 * 61.15900 * 19 18 17 21 21 C 1.53117 * 109.16032 * 57.65459 * 14 13 12 22 22 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 23 23 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 25 25 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 28 28 H 1.09000 * 109.46389 * 305.85096 * 12 11 10 29 29 H 1.08998 * 109.46466 * 65.81826 * 12 11 10 30 30 H 1.09001 * 109.50415 * 180.87699 * 13 12 11 31 31 H 1.09005 * 109.50244 * 60.76180 * 13 12 11 32 32 H 1.09008 * 109.57727 * 297.72064 * 14 13 12 33 33 H 1.08999 * 109.54559 * 300.13780 * 15 14 13 34 34 H 1.09004 * 109.52303 * 303.06369 * 16 15 14 35 35 H 1.08998 * 109.52284 * 63.24646 * 16 15 14 36 36 H 1.09002 * 109.48084 * 297.62350 * 17 16 15 37 37 H 1.09002 * 109.47839 * 177.59154 * 17 16 15 38 38 H 1.09003 * 109.48013 * 301.17173 * 19 18 17 39 39 H 1.09003 * 109.48561 * 181.14736 * 19 18 17 40 40 H 1.08996 * 109.51877 * 182.48325 * 20 19 18 41 41 H 1.08995 * 109.52172 * 62.29583 * 20 19 18 42 42 H 1.09006 * 109.50431 * 182.40729 * 21 14 13 43 43 H 1.08995 * 109.53846 * 62.30837 * 21 14 13 44 44 H 1.08992 * 109.46356 * 294.17825 * 22 11 10 45 45 H 1.09007 * 109.46137 * 54.15905 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.4204 -4.9118 -0.9842 13 6 -0.4100 -6.1910 -0.8561 14 6 0.4919 -7.4051 -1.0943 15 6 -0.3190 -8.6889 -0.9077 16 6 0.5820 -9.9040 -1.1490 17 6 -0.2553 -11.1807 -1.0378 18 8 -1.3298 -11.1276 -1.9785 19 6 -2.2321 -10.0387 -1.7726 20 6 -1.4741 -8.7161 -1.9134 21 6 1.6464 -7.3785 -0.0889 22 6 2.4172 -6.0650 -0.2392 23 1 -0.4851 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 -0.8905 27 1 2.8721 -3.6043 0.8895 28 1 -0.2160 -4.0460 -0.8010 29 1 0.8383 -4.8491 -1.9889 30 1 -1.2100 -6.1811 -1.5964 31 1 -0.8396 -6.2474 0.1441 32 1 0.8910 -7.3704 -2.1081 33 1 -0.7174 -8.7245 0.1062 34 1 1.0195 -9.8409 -2.1455 35 1 1.3759 -9.9228 -0.4023 36 1 -0.6593 -11.2637 -0.0288 37 1 0.3718 -12.0464 -1.2508 38 1 -2.6619 -10.1068 -0.7732 39 1 -3.0292 -10.0817 -2.5149 40 1 -2.1509 -7.8854 -1.7133 41 1 -1.0783 -8.6290 -2.9252 42 1 2.3157 -8.2172 -0.2810 43 1 1.2499 -7.4540 0.9236 44 1 2.8258 -5.9969 -1.2474 45 1 3.2312 -6.0367 0.4853 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153770297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:12 Heat of formation + Delta-G solvation = -92.105540 kcal Electronic energy + Delta-G solvation = -21046.492785 eV Core-core repulsion = 18061.628204 eV Total energy + Delta-G solvation = -2984.864581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.92544 -39.55080 -36.76493 -35.12131 -33.10308 -32.38144 -31.50790 -30.59152 -27.30651 -25.65142 -25.04512 -23.77652 -23.10578 -21.73221 -20.86021 -20.57718 -18.64382 -17.22942 -16.87611 -16.59748 -16.57828 -15.97977 -15.79169 -15.56101 -15.15645 -14.96545 -14.74352 -14.29186 -14.08421 -14.00678 -13.68491 -13.37988 -13.07197 -12.86008 -12.74083 -12.43516 -12.37319 -12.22700 -12.14682 -11.98083 -11.86487 -11.55574 -11.43495 -11.29835 -11.20367 -10.98429 -10.76997 -10.54220 -10.31548 -9.16655 -8.21871 -6.33480 1.38749 1.42043 1.50005 2.38941 3.02442 3.10457 3.11473 3.65764 3.67657 3.83934 4.09462 4.13082 4.14454 4.29118 4.31095 4.36920 4.48315 4.49029 4.51809 4.62259 4.64686 4.65247 4.74357 4.84048 4.85568 4.94230 4.95332 4.98942 5.02888 5.06464 5.11386 5.19478 5.22398 5.28407 5.35154 5.39772 5.42882 5.58942 5.65941 5.77010 6.08760 6.32151 6.32667 6.36975 6.82707 7.35510 8.89897 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.046332 B = 0.003292 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.182647 B = 8503.530248 C = 8968.053435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.076 3.924 11 N -0.546 5.546 12 C 0.053 3.947 13 C -0.102 4.102 14 C -0.073 4.073 15 C -0.077 4.077 16 C -0.147 4.147 17 C 0.057 3.943 18 O -0.407 6.407 19 C 0.059 3.941 20 C -0.152 4.152 21 C -0.101 4.101 22 C 0.051 3.949 23 H 0.264 0.736 24 H 0.000 1.000 25 H -0.008 1.008 26 H 0.016 0.984 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.017 0.983 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.024 0.976 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.639 -22.092 -2.398 22.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.051 4.051 11 N -0.271 5.271 12 C -0.075 4.075 13 C -0.140 4.140 14 C -0.092 4.092 15 C -0.095 4.095 16 C -0.185 4.185 17 C -0.020 4.020 18 O -0.326 6.326 19 C -0.017 4.017 20 C -0.189 4.189 21 C -0.139 4.139 22 C -0.077 4.077 23 H 0.073 0.927 24 H 0.018 0.982 25 H 0.011 0.989 26 H 0.034 0.966 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.012 -22.186 -2.081 22.307 hybrid contribution 0.618 1.730 -0.619 1.939 sum -0.394 -20.456 -2.700 20.637 Atomic orbital electron populations 1.70088 1.07777 1.27907 1.51253 1.25960 0.95787 1.03313 0.94536 0.85483 0.78280 0.77979 0.79190 1.19214 1.20672 1.19116 1.21605 0.93507 0.92367 1.51191 0.92306 1.19041 0.94250 0.92097 0.95153 1.21985 0.95796 0.88585 0.98749 1.62033 1.12178 1.03064 1.49830 1.22116 0.93874 0.99226 0.92312 1.21631 0.97540 0.92628 1.02168 1.21147 0.95370 0.93699 0.98962 1.21155 0.95264 0.93666 0.99444 1.22258 0.98870 0.94382 1.02991 1.22723 0.88341 0.98282 0.92620 1.87888 1.39742 1.49395 1.55608 1.22673 0.91775 0.85366 1.01929 1.22273 0.98259 0.98529 0.99859 1.21633 0.96986 0.95500 0.99781 1.22191 0.95164 0.91194 0.99103 0.92686 0.98195 0.98921 0.96595 0.91894 0.92555 0.96488 0.90684 0.91733 0.92047 0.90823 0.91733 0.89385 0.92525 0.87877 0.92528 0.88195 0.90287 0.91840 0.89347 0.91390 0.95811 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.74 4.22 29.85 0.13 1.86 16 10 C 0.08 3.38 5.21 86.31 0.45 3.83 16 11 N -0.55 -20.39 4.81 -896.35 -4.31 -24.69 16 12 C 0.05 1.92 4.85 86.33 0.42 2.33 16 13 C -0.10 -2.77 4.96 30.64 0.15 -2.61 16 14 C -0.07 -1.60 1.84 -10.72 -0.02 -1.62 16 15 C -0.08 -1.35 1.86 -10.67 -0.02 -1.37 16 16 C -0.15 -2.23 4.98 30.68 0.15 -2.08 16 17 C 0.06 0.84 6.84 72.01 0.49 1.33 16 18 O -0.41 -7.95 10.77 -148.98 -1.60 -9.55 16 19 C 0.06 0.96 6.84 72.01 0.49 1.45 16 20 C -0.15 -2.63 4.98 30.68 0.15 -2.48 16 21 C -0.10 -2.24 4.96 30.65 0.15 -2.09 16 22 C 0.05 1.48 5.42 86.33 0.47 1.95 16 23 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.00 -0.01 6.21 -2.39 -0.01 -0.02 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 27 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.06 2.44 5.81 -2.39 -0.01 2.42 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 1.84 6.66 -2.39 -0.02 1.82 16 31 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.09 1.12 6.69 -2.39 -0.02 1.11 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.35 6.69 -2.39 -0.02 1.33 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.09 1.52 6.67 -2.38 -0.02 1.50 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 2.07 8.12 -2.38 -0.02 2.05 16 Total: -1.00 -65.81 336.24 1.04 -64.78 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.92 Total: 10.33 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.71 Total: -30.62 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -4.02 Total: -81.66 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -1.60 Total: -9.55 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.81 1.04 -64.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153770297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.330 kcal (2) G-P(sol) polarization free energy of solvation -65.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds