Wall clock time and date at job start Mon Mar 30 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48497 * 109.47037 * 269.99713 * 3 2 1 5 5 H 1.48502 * 109.47056 * 29.99724 * 3 2 1 6 6 H 1.48501 * 109.46759 * 149.99901 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00012 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99846 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46987 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46703 * 180.02562 * 10 9 7 12 12 C 1.48804 * 111.18693 * 52.66378 * 11 10 9 13 13 C 1.54940 * 103.34860 * 159.50408 * 12 11 10 14 14 C 1.54593 * 102.91984 * 322.69012 * 13 12 11 15 15 C 1.47902 * 110.99698 * 170.00532 * 11 10 9 16 16 H 1.08998 * 109.91618 * 333.69892 * 15 11 10 17 17 C 1.52997 * 109.92010 * 94.80155 * 15 11 10 18 18 H 1.08992 * 109.47280 * 59.60014 * 17 15 11 19 19 C 1.52996 * 109.46975 * 299.59479 * 17 15 11 20 20 C 1.53000 * 109.47328 * 180.02562 * 19 17 15 21 21 C 1.52997 * 109.47060 * 60.00126 * 20 19 17 22 22 C 1.53006 * 109.47127 * 300.00449 * 21 20 19 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 21 20 24 24 H 1.09002 * 109.47045 * 180.02562 * 23 22 21 25 25 O 1.42896 * 109.47412 * 60.00080 * 23 22 21 26 26 H 0.96999 * 120.00429 * 359.97438 * 1 2 3 27 27 H 1.09012 * 109.46899 * 60.00282 * 9 7 2 28 28 H 1.09001 * 109.47561 * 300.00711 * 9 7 2 29 29 H 1.08998 * 109.46900 * 60.00521 * 10 9 7 30 30 H 1.08992 * 109.47141 * 300.00031 * 10 9 7 31 31 H 1.09001 * 110.51913 * 41.07302 * 12 11 10 32 32 H 1.08998 * 110.70215 * 278.01957 * 12 11 10 33 33 H 1.09003 * 110.72735 * 204.33594 * 13 12 11 34 34 H 1.09001 * 110.87978 * 81.11901 * 13 12 11 35 35 H 1.08994 * 110.31062 * 263.03960 * 14 13 12 36 36 H 1.09001 * 110.30743 * 140.87566 * 14 13 12 37 37 H 1.09004 * 109.47368 * 60.00217 * 19 17 15 38 38 H 1.09001 * 109.47372 * 300.00372 * 19 17 15 39 39 H 1.09002 * 109.47398 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47194 * 300.00476 * 20 19 17 41 41 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 42 42 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47002 * 299.99574 * 22 21 20 44 44 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 45 45 H 0.96703 * 114.00193 * 59.99717 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0014 11 7 5.4906 -2.6364 0.0014 12 6 6.0283 -1.7938 1.1038 13 6 7.4743 -2.3204 1.2839 14 6 7.3190 -3.8416 1.0560 15 6 6.0207 -3.9960 0.2424 16 1 5.2960 -4.5822 0.8074 17 6 6.3200 -4.6828 -1.0916 18 1 7.0542 -4.0975 -1.6449 19 6 5.0318 -4.7905 -1.9100 20 6 5.3309 -5.4779 -3.2438 21 6 5.8873 -6.8788 -2.9820 22 6 7.1755 -6.7712 -2.1634 23 6 6.8764 -6.0838 -0.8297 24 1 7.7942 -6.0067 -0.2468 25 8 5.9136 -6.8507 -0.1039 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6795 0.8896 28 1 3.8746 -0.6807 -0.8904 29 1 3.6579 -3.1513 -0.8879 30 1 3.6586 -3.1493 0.8920 31 1 5.4488 -1.9415 2.0151 32 1 6.0348 -0.7422 0.8169 33 1 7.8364 -2.1164 2.2916 34 1 8.1417 -1.8851 0.5402 35 1 7.2312 -4.3601 2.0106 36 1 8.1675 -4.2280 0.4913 37 1 4.6351 -3.7924 -2.0962 38 1 4.2975 -5.3759 -1.3566 39 1 4.4132 -5.5542 -3.8271 40 1 6.0653 -4.8929 -3.7974 41 1 5.1530 -7.4639 -2.4283 42 1 6.1009 -7.3685 -3.9321 43 1 7.9100 -6.1862 -2.7170 44 1 7.5717 -7.7693 -1.9765 45 1 6.1997 -7.7522 0.0976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228490051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:31 Heat of formation + Delta-G solvation = -70.589695 kcal Electronic energy + Delta-G solvation = -21906.131677 eV Core-core repulsion = 18922.200093 eV Total energy + Delta-G solvation = -2983.931584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.97506 -37.90508 -34.98499 -33.73849 -31.94140 -31.67362 -29.82054 -28.82656 -27.00625 -24.44748 -22.75661 -22.43232 -21.16272 -19.93182 -19.58047 -19.24363 -16.92533 -16.78109 -16.00655 -15.28169 -14.90285 -14.68901 -14.11845 -14.07863 -13.90437 -13.38654 -13.06463 -12.85065 -12.55927 -12.46066 -12.13386 -12.02496 -11.74674 -11.50095 -11.42537 -11.16930 -10.93512 -10.85026 -10.76477 -10.46724 -10.38773 -10.24724 -10.06694 -9.96319 -9.65910 -9.59781 -9.39591 -9.11155 -8.49329 -7.81071 -6.00387 -3.98011 3.34768 3.41418 3.45967 4.25013 4.36659 4.49373 4.71374 4.78763 4.88390 4.96558 4.99999 5.21449 5.30531 5.34180 5.35118 5.44898 5.50882 5.61218 5.61483 5.70237 5.79653 5.87875 5.94130 5.97185 6.04089 6.09211 6.17815 6.19551 6.22934 6.28714 6.32701 6.42891 6.43444 6.50739 6.64316 6.74617 6.89994 7.24508 7.37294 7.56053 7.65109 7.70296 7.91997 8.58289 9.04547 9.62365 11.13141 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.005305 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.768588 B = 5276.953079 C = 6038.493741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.011 4.011 10 C 0.058 3.942 11 N -0.517 5.517 12 C 0.039 3.961 13 C -0.125 4.125 14 C -0.125 4.125 15 C 0.072 3.928 16 H 0.058 0.942 17 C -0.057 4.057 18 H 0.081 0.919 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.114 4.114 22 C -0.150 4.150 23 C 0.108 3.892 24 H 0.051 0.949 25 O -0.556 6.556 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.018 0.982 29 H 0.077 0.923 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.959 -12.840 -1.814 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.069 4.069 11 N -0.241 5.241 12 C -0.089 4.089 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.036 4.036 16 H 0.076 0.924 17 C -0.076 4.076 18 H 0.100 0.900 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.152 4.152 22 C -0.188 4.188 23 C 0.049 3.951 24 H 0.069 0.931 25 O -0.361 6.361 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 17.599 -11.959 -2.375 21.410 hybrid contribution 0.361 0.056 0.793 0.874 sum 17.961 -11.903 -1.582 21.605 Atomic orbital electron populations 1.69918 1.06299 1.26821 1.51356 1.24994 0.94687 0.99101 0.94570 0.86762 0.80299 0.83589 0.78539 1.20257 1.21523 1.19053 1.21094 0.89459 0.94475 1.50687 0.91122 1.19629 0.96682 0.91949 0.96603 1.22454 0.84159 1.00066 1.00236 1.64774 1.10111 1.06685 1.42504 1.23177 0.93557 0.98732 0.93442 1.22499 0.97475 0.95332 1.00985 1.22466 0.97675 0.96608 0.99575 1.22319 0.95649 0.90973 0.94702 0.92354 1.21076 0.98377 0.92022 0.96102 0.90042 1.21670 0.97183 1.01676 0.94757 1.21542 1.00579 0.95556 0.97957 1.21439 0.96964 0.97832 0.98932 1.22235 0.98538 1.00419 0.97597 1.21891 0.90823 0.91795 0.90616 0.93107 1.86604 1.44723 1.28020 1.76731 0.92793 0.96702 0.96320 0.90502 0.95667 0.93848 0.90219 0.91748 0.91204 0.92032 0.91610 0.90040 0.91587 0.92135 0.92448 0.91496 0.92758 0.91295 0.92270 0.78543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 9 C -0.01 -0.27 3.71 -27.88 -0.10 -0.37 16 10 C 0.06 1.22 4.46 -3.82 -0.02 1.21 16 11 N -0.52 -9.20 4.73 -222.34 -1.05 -10.25 16 12 C 0.04 0.65 5.12 -1.74 -0.01 0.64 16 13 C -0.12 -1.62 7.06 -24.87 -0.18 -1.80 16 14 C -0.13 -1.57 5.99 -25.37 -0.15 -1.72 16 15 C 0.07 1.09 2.02 -66.64 -0.13 0.95 16 16 H 0.06 1.00 7.11 -51.93 -0.37 0.63 16 17 C -0.06 -0.75 1.64 -90.62 -0.15 -0.90 16 18 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 19 C -0.12 -1.69 3.95 -26.73 -0.11 -1.80 16 20 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 21 C -0.11 -1.18 5.78 -26.73 -0.15 -1.34 16 22 C -0.15 -1.38 5.64 -26.73 -0.15 -1.53 16 23 C 0.11 1.15 2.97 -26.73 -0.08 1.07 16 24 H 0.05 0.49 6.62 -51.93 -0.34 0.15 16 25 O -0.56 -6.28 11.30 -35.23 -0.40 -6.68 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.01 0.37 5.87 -51.92 -0.30 0.06 16 28 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 29 H 0.08 1.64 5.35 -51.93 -0.28 1.36 16 30 H 0.03 0.56 7.81 -51.93 -0.41 0.15 16 31 H 0.04 0.76 8.00 -51.93 -0.42 0.34 16 32 H 0.08 1.39 7.69 -51.93 -0.40 0.99 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.72 6.55 -51.93 -0.34 0.38 16 37 H 0.08 1.38 5.71 -51.93 -0.30 1.09 16 38 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.37 2.61 9.08 45.56 0.41 3.02 16 LS Contribution 329.89 15.07 4.97 4.97 Total: -1.00 -31.66 329.89 -9.51 -41.17 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.32 Total: 1.61 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -1.82 Total: -20.78 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.28 Total: -37.90 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.40 Total: -6.68 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.66 -9.51 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228490051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.419 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds