Wall clock time and date at job start Mon Mar 30 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48497 * 109.47037 * 269.99713 * 3 2 1 5 5 H 1.48502 * 109.47056 * 29.99724 * 3 2 1 6 6 H 1.48501 * 109.46759 * 149.99901 * 3 2 1 7 7 C 1.37878 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00012 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99846 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46987 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46703 * 180.02562 * 10 9 7 12 12 C 1.48804 * 111.18693 * 52.66378 * 11 10 9 13 13 C 1.54940 * 103.34860 * 159.50408 * 12 11 10 14 14 C 1.54593 * 102.91984 * 322.69012 * 13 12 11 15 15 C 1.47902 * 110.99698 * 170.00532 * 11 10 9 16 16 H 1.08998 * 109.91618 * 333.69892 * 15 11 10 17 17 C 1.52997 * 109.92010 * 94.80155 * 15 11 10 18 18 H 1.08992 * 109.47280 * 59.60014 * 17 15 11 19 19 C 1.52996 * 109.46975 * 299.59479 * 17 15 11 20 20 C 1.53000 * 109.47328 * 180.02562 * 19 17 15 21 21 C 1.52997 * 109.47060 * 60.00126 * 20 19 17 22 22 C 1.53006 * 109.47127 * 300.00449 * 21 20 19 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 21 20 24 24 H 1.09002 * 109.47045 * 180.02562 * 23 22 21 25 25 O 1.42896 * 109.47412 * 60.00080 * 23 22 21 26 26 H 0.96999 * 120.00429 * 359.97438 * 1 2 3 27 27 H 1.09012 * 109.46899 * 60.00282 * 9 7 2 28 28 H 1.09001 * 109.47561 * 300.00711 * 9 7 2 29 29 H 1.08998 * 109.46900 * 60.00521 * 10 9 7 30 30 H 1.08992 * 109.47141 * 300.00031 * 10 9 7 31 31 H 1.09001 * 110.51913 * 41.07302 * 12 11 10 32 32 H 1.08998 * 110.70215 * 278.01957 * 12 11 10 33 33 H 1.09003 * 110.72735 * 204.33594 * 13 12 11 34 34 H 1.09001 * 110.87978 * 81.11901 * 13 12 11 35 35 H 1.08994 * 110.31062 * 263.03960 * 14 13 12 36 36 H 1.09001 * 110.30743 * 140.87566 * 14 13 12 37 37 H 1.09004 * 109.47368 * 60.00217 * 19 17 15 38 38 H 1.09001 * 109.47372 * 300.00372 * 19 17 15 39 39 H 1.09002 * 109.47398 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.47194 * 300.00476 * 20 19 17 41 41 H 1.08998 * 109.47533 * 59.99948 * 21 20 19 42 42 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47002 * 299.99574 * 22 21 20 44 44 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 45 45 H 0.96703 * 114.00193 * 59.99717 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6365 0.0014 11 7 5.4906 -2.6364 0.0014 12 6 6.0283 -1.7938 1.1038 13 6 7.4743 -2.3204 1.2839 14 6 7.3190 -3.8416 1.0560 15 6 6.0207 -3.9960 0.2424 16 1 5.2960 -4.5822 0.8074 17 6 6.3200 -4.6828 -1.0916 18 1 7.0542 -4.0975 -1.6449 19 6 5.0318 -4.7905 -1.9100 20 6 5.3309 -5.4779 -3.2438 21 6 5.8873 -6.8788 -2.9820 22 6 7.1755 -6.7712 -2.1634 23 6 6.8764 -6.0838 -0.8297 24 1 7.7942 -6.0067 -0.2468 25 8 5.9136 -6.8507 -0.1039 26 1 -0.4851 0.8400 0.0004 27 1 3.8752 -0.6795 0.8896 28 1 3.8746 -0.6807 -0.8904 29 1 3.6579 -3.1513 -0.8879 30 1 3.6586 -3.1493 0.8920 31 1 5.4488 -1.9415 2.0151 32 1 6.0348 -0.7422 0.8169 33 1 7.8364 -2.1164 2.2916 34 1 8.1417 -1.8851 0.5402 35 1 7.2312 -4.3601 2.0106 36 1 8.1675 -4.2280 0.4913 37 1 4.6351 -3.7924 -2.0962 38 1 4.2975 -5.3759 -1.3566 39 1 4.4132 -5.5542 -3.8271 40 1 6.0653 -4.8929 -3.7974 41 1 5.1530 -7.4639 -2.4283 42 1 6.1009 -7.3685 -3.9321 43 1 7.9100 -6.1862 -2.7170 44 1 7.5717 -7.7693 -1.9765 45 1 6.1997 -7.7522 0.0976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228490051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:31 Heat of formation + Delta-G solvation = -92.848348 kcal Electronic energy + Delta-G solvation = -21907.096885 eV Core-core repulsion = 18922.200093 eV Total energy + Delta-G solvation = -2984.896792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07263 -39.03096 -35.89300 -35.66720 -33.85995 -32.69859 -30.89571 -30.47863 -28.11065 -26.28587 -23.97909 -23.49473 -22.50301 -21.26202 -20.79861 -20.45585 -19.00563 -17.77631 -17.06393 -16.64099 -16.37535 -15.92101 -15.63898 -15.47657 -14.98425 -14.84144 -14.52024 -14.11328 -13.88243 -13.73593 -13.45549 -13.39061 -13.02804 -12.91579 -12.56893 -12.49117 -12.34291 -12.00833 -11.95739 -11.90028 -11.70931 -11.64097 -11.46125 -11.37758 -11.32219 -11.21426 -10.79763 -10.62931 -10.46635 -9.29144 -8.32954 -6.37776 1.33311 1.35012 1.47616 2.33600 3.02136 3.06437 3.46534 3.73338 3.78935 3.92357 3.95436 4.04009 4.18063 4.29063 4.36078 4.39491 4.47097 4.51936 4.55897 4.61031 4.65817 4.71013 4.74900 4.86408 4.94635 4.97490 5.03039 5.03884 5.10713 5.13978 5.21469 5.25982 5.29352 5.34422 5.38826 5.42699 5.43844 5.54645 5.60779 5.64680 6.06902 6.20636 6.28370 6.69384 7.05465 7.26881 8.84113 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.005305 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.768588 B = 5276.953079 C = 6038.493741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.248 1.248 7 C -0.535 4.535 8 H 0.027 0.973 9 C 0.000 4.000 10 C 0.074 3.926 11 N -0.518 5.518 12 C 0.028 3.972 13 C -0.113 4.113 14 C -0.118 4.118 15 C 0.070 3.930 16 H 0.030 0.970 17 C -0.055 4.055 18 H 0.088 0.912 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.144 4.144 23 C 0.112 3.888 24 H 0.073 0.927 25 O -0.580 6.580 26 H 0.268 0.732 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.004 0.996 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.038 0.962 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.868 -12.910 -1.959 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.189 4.189 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.574 4.574 8 H 0.045 0.955 9 C -0.038 4.038 10 C -0.054 4.054 11 N -0.242 5.242 12 C -0.100 4.100 13 C -0.151 4.151 14 C -0.156 4.156 15 C -0.038 4.038 16 H 0.048 0.952 17 C -0.074 4.074 18 H 0.107 0.893 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.182 4.182 23 C 0.053 3.947 24 H 0.090 0.910 25 O -0.387 6.387 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 21.528 -12.062 -2.515 24.805 hybrid contribution -0.977 -0.005 0.844 1.291 sum 20.551 -12.067 -1.672 23.890 Atomic orbital electron populations 1.70067 1.08299 1.28285 1.52415 1.25990 0.95619 1.03490 0.93810 0.85608 0.79383 0.78012 0.79341 1.19018 1.20586 1.17208 1.21389 0.91918 0.93133 1.50927 0.95454 1.19472 0.93615 0.94171 0.96507 1.22101 0.86966 0.97481 0.98836 1.64767 1.07215 1.08903 1.43325 1.23297 0.96145 0.98351 0.92219 1.22474 0.94678 0.95176 1.02774 1.22461 0.96691 0.96621 0.99794 1.22402 0.96356 0.88922 0.96112 0.95158 1.21088 0.97519 0.94153 0.94648 0.89332 1.21549 0.97563 0.99536 0.96313 1.21531 1.00677 0.96999 0.96302 1.21413 0.97451 0.96053 0.99984 1.22213 0.97822 1.01843 0.96310 1.21862 0.90888 0.90069 0.91910 0.90973 1.86576 1.45643 1.29562 1.76962 0.92349 0.96271 0.96208 0.91536 0.97737 0.95372 0.91013 0.89564 0.89891 0.91265 0.88886 0.93317 0.94275 0.93027 0.91503 0.92659 0.91068 0.90226 0.89767 0.76375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.95 46.09 27.47 68.60 1.88 47.98 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 7 C -0.54 -32.79 9.66 25.60 0.25 -32.54 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C 0.00 0.00 3.71 29.85 0.11 0.11 16 10 C 0.07 3.31 4.46 86.30 0.38 3.69 16 11 N -0.52 -18.56 4.73 -857.34 -4.06 -22.62 16 12 C 0.03 0.90 5.12 86.60 0.44 1.34 16 13 C -0.11 -2.58 7.06 31.80 0.22 -2.35 16 14 C -0.12 -2.59 5.99 31.47 0.19 -2.40 16 15 C 0.07 2.08 2.02 45.06 0.09 2.17 16 16 H 0.03 1.07 7.11 -2.39 -0.02 1.05 16 17 C -0.06 -1.40 1.64 -10.80 -0.02 -1.42 16 18 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 19 C -0.11 -3.40 3.95 30.59 0.12 -3.28 16 20 C -0.12 -2.83 5.92 30.59 0.18 -2.65 16 21 C -0.11 -2.10 5.78 30.60 0.18 -1.92 16 22 C -0.14 -2.14 5.64 30.60 0.17 -1.97 16 23 C 0.11 2.08 2.97 30.59 0.09 2.17 16 24 H 0.07 1.07 6.62 -2.39 -0.02 1.06 16 25 O -0.58 -12.28 11.30 -148.98 -1.68 -13.96 16 26 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 27 H 0.02 0.95 5.87 -2.38 -0.01 0.94 16 28 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 29 H 0.07 3.08 5.35 -2.39 -0.01 3.07 16 30 H 0.00 0.21 7.81 -2.39 -0.02 0.19 16 31 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 32 H 0.07 2.42 7.69 -2.39 -0.02 2.40 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.59 6.55 -2.39 -0.02 1.57 16 37 H 0.05 1.76 5.71 -2.39 -0.01 1.75 16 38 H 0.04 1.36 7.68 -2.39 -0.02 1.34 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 1.17 7.68 -2.39 -0.02 1.15 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.39 4.63 9.08 -74.05 -0.67 3.96 16 Total: -1.00 -71.96 329.89 -0.45 -72.41 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.22 Total: 15.58 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 2.88 Total: -38.11 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -3.76 Total: -83.90 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.68 Total: -13.96 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.98 kcal Total: -71.96 -0.45 -72.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228490051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.434 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds