Wall clock time and date at job start Mon Mar 30 2020 07:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99728 * 2 1 4 4 H 1.48501 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47314 * 299.99854 * 3 2 1 6 6 H 1.48496 * 109.47112 * 60.00262 * 3 2 1 7 7 C 1.37874 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00339 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47007 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.46878 * 179.97438 * 10 9 7 12 12 C 1.46844 * 110.99947 * 69.63615 * 11 10 9 13 13 C 1.53034 * 109.52518 * 185.83868 * 12 11 10 14 14 C 1.53130 * 109.30948 * 300.84226 * 13 12 11 15 15 C 1.53116 * 109.16102 * 57.59111 * 14 13 12 16 16 C 1.46854 * 110.99910 * 193.84023 * 11 10 9 17 17 H 1.09003 * 109.45465 * 294.17795 * 16 11 10 18 18 C 1.53003 * 109.45708 * 54.14789 * 16 11 10 19 19 H 1.09002 * 110.43349 * 301.10238 * 18 16 11 20 20 C 1.54272 * 110.48126 * 178.56943 * 18 16 11 21 21 C 1.53878 * 106.59334 * 217.71043 * 20 18 16 22 22 C 1.54264 * 106.59953 * 359.97438 * 21 20 18 23 23 C 1.54881 * 110.48873 * 63.79316 * 18 16 11 24 24 H 1.09004 * 110.75606 * 38.30308 * 23 18 16 25 25 O 1.42898 * 110.75676 * 274.93136 * 23 18 16 26 26 H 0.96998 * 120.00283 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47184 * 59.99925 * 9 7 2 28 28 H 1.09002 * 109.47096 * 300.00084 * 9 7 2 29 29 H 1.08993 * 109.47342 * 60.00191 * 10 9 7 30 30 H 1.09003 * 109.47289 * 299.99452 * 10 9 7 31 31 H 1.09007 * 109.46251 * 305.85053 * 12 11 10 32 32 H 1.08996 * 109.46636 * 65.81879 * 12 11 10 33 33 H 1.08997 * 109.50542 * 60.75504 * 13 12 11 34 34 H 1.08996 * 109.50785 * 180.83826 * 13 12 11 35 35 H 1.09003 * 109.48352 * 297.70702 * 14 13 12 36 36 H 1.08999 * 109.55770 * 177.51753 * 14 13 12 37 37 H 1.08991 * 109.50259 * 182.44778 * 15 14 13 38 38 H 1.09000 * 109.50456 * 62.36543 * 15 14 13 39 39 H 1.09002 * 110.03289 * 336.99144 * 20 18 16 40 40 H 1.09002 * 110.03086 * 98.42775 * 20 18 16 41 41 H 1.09000 * 110.02968 * 119.28809 * 21 20 18 42 42 H 1.09001 * 110.03062 * 240.70859 * 21 20 18 43 43 H 1.08999 * 110.48296 * 142.29294 * 22 21 20 44 44 H 1.08998 * 110.48603 * 264.79682 * 22 21 20 45 45 H 0.96701 * 114.00297 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.8341 -5.1518 -1.2838 13 6 -0.0353 -6.4082 -1.1977 14 6 0.8467 -7.6118 -0.8538 15 6 1.5780 -7.3389 0.4635 16 6 2.4007 -6.0555 0.3291 17 1 3.1380 -6.1780 -0.4643 18 6 3.1167 -5.7683 1.6504 19 1 3.6934 -4.8461 1.5781 20 6 4.0321 -6.9487 2.0361 21 6 3.9356 -7.0984 3.5645 22 6 2.9656 -6.0035 4.0543 23 6 2.0964 -5.6833 2.8126 24 1 1.3085 -6.4265 2.6901 25 8 1.5443 -4.3686 2.9067 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 0.2064 -4.2909 -1.5141 32 1 1.5788 -5.2786 -2.0696 33 1 -0.7890 -6.2767 -0.4214 34 1 -0.5258 -6.5778 -2.1561 35 1 1.5753 -7.7677 -1.6494 36 1 0.2254 -8.5011 -0.7480 37 1 2.2406 -8.1737 0.6915 38 1 0.8501 -7.2222 1.2664 39 1 3.6893 -7.8616 1.5491 40 1 5.0606 -6.7338 1.7461 41 1 3.5461 -8.0841 3.8192 42 1 4.9174 -6.9564 4.0163 43 1 2.3448 -6.3798 4.8673 44 1 3.5179 -5.1201 4.3747 45 1 0.8997 -4.2628 3.6197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253088919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:54 Heat of formation + Delta-G solvation = -65.400325 kcal Electronic energy + Delta-G solvation = -22208.767207 eV Core-core repulsion = 19225.060651 eV Total energy + Delta-G solvation = -2983.706556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.83151 -37.34817 -34.72830 -33.97975 -32.39246 -31.43279 -28.95311 -27.71663 -26.93142 -24.81353 -23.22045 -22.26814 -20.74524 -19.97302 -19.82487 -18.45412 -17.06808 -16.33125 -15.52537 -14.96480 -14.59563 -14.52591 -14.31523 -13.95493 -13.78608 -13.39896 -13.03165 -12.74650 -12.44279 -12.22833 -11.97936 -11.90688 -11.46631 -11.30827 -11.11710 -10.98150 -10.95328 -10.82905 -10.58588 -10.51688 -10.38100 -10.14507 -9.87847 -9.78279 -9.43316 -9.25247 -9.09825 -8.90157 -8.17728 -7.42454 -5.86411 -3.86552 3.38136 3.45168 3.49638 4.37092 4.51467 4.58373 4.72739 4.86334 5.07132 5.14032 5.15110 5.18548 5.42483 5.49543 5.51442 5.58333 5.60962 5.67055 5.69337 5.80543 5.88105 5.92213 5.93618 6.07153 6.11540 6.15764 6.18052 6.22835 6.27370 6.35940 6.40251 6.46288 6.56586 6.61633 6.72875 6.83602 7.29101 7.77122 7.82998 7.99816 8.15560 8.26762 8.34122 8.62474 9.21782 9.75460 11.25185 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.006090 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.047623 B = 4596.821880 C = 5568.387612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.050 0.950 9 C 0.036 3.964 10 C 0.067 3.933 11 N -0.517 5.517 12 C 0.054 3.946 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.093 3.907 17 H 0.029 0.971 18 C -0.082 4.082 19 H 0.089 0.911 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.164 4.164 23 C 0.115 3.885 24 H 0.062 0.938 25 O -0.530 6.530 26 H 0.257 0.743 27 H 0.008 0.992 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.006 0.994 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.896 -17.479 4.378 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.069 0.931 9 C -0.001 4.001 10 C -0.059 4.059 11 N -0.242 5.242 12 C -0.074 4.074 13 C -0.153 4.153 14 C -0.156 4.156 15 C -0.153 4.153 16 C -0.015 4.015 17 H 0.047 0.953 18 C -0.101 4.101 19 H 0.107 0.893 20 C -0.162 4.162 21 C -0.156 4.156 22 C -0.202 4.202 23 C 0.055 3.945 24 H 0.080 0.920 25 O -0.333 6.333 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.024 0.976 31 H 0.102 0.898 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.802 -17.231 4.217 18.142 hybrid contribution 0.790 0.819 -0.178 1.152 sum 4.592 -16.411 4.040 17.514 Atomic orbital electron populations 1.69987 1.05919 1.26076 1.51512 1.24957 0.94765 0.98899 0.95708 0.86617 0.80138 0.84269 0.77433 1.19908 1.21210 1.21107 1.21269 0.92858 0.91331 1.49657 0.93140 1.18993 0.93915 0.89762 0.97478 1.22341 0.96770 0.88359 0.98467 1.61966 1.30389 1.01820 1.29994 1.22093 0.97047 0.98101 0.90130 1.21581 0.98262 0.94392 1.01077 1.21567 0.98697 0.97901 0.97459 1.21777 0.99083 0.96391 0.98006 1.21469 0.93054 0.91855 0.95170 0.95297 1.22072 0.95556 0.98700 0.93776 0.89288 1.22256 0.99602 0.98595 0.95723 1.21982 0.99369 0.98576 0.95717 1.23156 0.98815 0.99280 0.98908 1.22674 0.93710 0.85611 0.92460 0.91992 1.86813 1.61307 1.28682 1.56470 0.93318 0.97367 0.95103 0.90969 0.97622 0.89825 0.96261 0.91288 0.92350 0.92796 0.92499 0.92081 0.90966 0.91165 0.91833 0.92100 0.92075 0.92099 0.90902 0.78868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.51 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 10 C 0.07 1.50 4.16 -3.82 -0.02 1.48 16 11 N -0.52 -9.69 3.89 -226.68 -0.88 -10.57 16 12 C 0.05 0.97 5.30 -3.84 -0.02 0.95 16 13 C -0.12 -1.65 6.09 -26.65 -0.16 -1.81 16 14 C -0.12 -1.47 6.00 -26.60 -0.16 -1.63 16 15 C -0.12 -1.47 4.78 -26.65 -0.13 -1.60 16 16 C 0.09 1.44 1.72 -67.72 -0.12 1.32 16 17 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 18 C -0.08 -1.20 2.03 -88.96 -0.18 -1.38 16 19 H 0.09 1.54 6.04 -51.93 -0.31 1.22 16 20 C -0.12 -1.40 6.19 -25.61 -0.16 -1.56 16 21 C -0.12 -1.22 6.80 -25.61 -0.17 -1.39 16 22 C -0.16 -1.91 6.55 -25.06 -0.16 -2.07 16 23 C 0.11 1.61 3.40 -24.73 -0.08 1.52 16 24 H 0.06 0.84 5.69 -51.93 -0.30 0.54 16 25 O -0.53 -9.07 11.96 -35.23 -0.42 -9.49 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.01 0.23 6.56 -51.93 -0.34 -0.11 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.07 1.65 4.89 -51.93 -0.25 1.39 16 30 H 0.01 0.13 8.08 -51.93 -0.42 -0.29 16 31 H 0.08 1.68 6.39 -51.92 -0.33 1.35 16 32 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.67 6.08 -51.93 -0.32 0.35 16 38 H 0.07 0.96 6.01 -51.93 -0.31 0.65 16 39 H 0.07 0.72 5.68 -51.93 -0.30 0.43 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.37 4.91 9.12 45.56 0.42 5.33 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -31.87 330.88 -9.59 -41.46 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.08 Total: 2.35 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -1.91 Total: -19.13 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: -0.14 Total: -37.51 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.42 Total: -9.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.87 -9.59 -41.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253088919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.942 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds