Wall clock time and date at job start Mon Mar 30 2020 07:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99728 * 2 1 4 4 H 1.48501 * 109.47004 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47314 * 299.99854 * 3 2 1 6 6 H 1.48496 * 109.47112 * 60.00262 * 3 2 1 7 7 C 1.37874 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00339 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47007 * 179.97438 * 9 7 2 11 11 N 1.46907 * 109.46878 * 179.97438 * 10 9 7 12 12 C 1.46844 * 110.99947 * 69.63615 * 11 10 9 13 13 C 1.53034 * 109.52518 * 185.83868 * 12 11 10 14 14 C 1.53130 * 109.30948 * 300.84226 * 13 12 11 15 15 C 1.53116 * 109.16102 * 57.59111 * 14 13 12 16 16 C 1.46854 * 110.99910 * 193.84023 * 11 10 9 17 17 H 1.09003 * 109.45465 * 294.17795 * 16 11 10 18 18 C 1.53003 * 109.45708 * 54.14789 * 16 11 10 19 19 H 1.09002 * 110.43349 * 301.10238 * 18 16 11 20 20 C 1.54272 * 110.48126 * 178.56943 * 18 16 11 21 21 C 1.53878 * 106.59334 * 217.71043 * 20 18 16 22 22 C 1.54264 * 106.59953 * 359.97438 * 21 20 18 23 23 C 1.54881 * 110.48873 * 63.79316 * 18 16 11 24 24 H 1.09004 * 110.75606 * 38.30308 * 23 18 16 25 25 O 1.42898 * 110.75676 * 274.93136 * 23 18 16 26 26 H 0.96998 * 120.00283 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47184 * 59.99925 * 9 7 2 28 28 H 1.09002 * 109.47096 * 300.00084 * 9 7 2 29 29 H 1.08993 * 109.47342 * 60.00191 * 10 9 7 30 30 H 1.09003 * 109.47289 * 299.99452 * 10 9 7 31 31 H 1.09007 * 109.46251 * 305.85053 * 12 11 10 32 32 H 1.08996 * 109.46636 * 65.81879 * 12 11 10 33 33 H 1.08997 * 109.50542 * 60.75504 * 13 12 11 34 34 H 1.08996 * 109.50785 * 180.83826 * 13 12 11 35 35 H 1.09003 * 109.48352 * 297.70702 * 14 13 12 36 36 H 1.08999 * 109.55770 * 177.51753 * 14 13 12 37 37 H 1.08991 * 109.50259 * 182.44778 * 15 14 13 38 38 H 1.09000 * 109.50456 * 62.36543 * 15 14 13 39 39 H 1.09002 * 110.03289 * 336.99144 * 20 18 16 40 40 H 1.09002 * 110.03086 * 98.42775 * 20 18 16 41 41 H 1.09000 * 110.02968 * 119.28809 * 21 20 18 42 42 H 1.09001 * 110.03062 * 240.70859 * 21 20 18 43 43 H 1.08999 * 110.48296 * 142.29294 * 22 21 20 44 44 H 1.08998 * 110.48603 * 264.79682 * 22 21 20 45 45 H 0.96701 * 114.00297 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.8341 -5.1518 -1.2838 13 6 -0.0353 -6.4082 -1.1977 14 6 0.8467 -7.6118 -0.8538 15 6 1.5780 -7.3389 0.4635 16 6 2.4007 -6.0555 0.3291 17 1 3.1380 -6.1780 -0.4643 18 6 3.1167 -5.7683 1.6504 19 1 3.6934 -4.8461 1.5781 20 6 4.0321 -6.9487 2.0361 21 6 3.9356 -7.0984 3.5645 22 6 2.9656 -6.0035 4.0543 23 6 2.0964 -5.6833 2.8126 24 1 1.3085 -6.4265 2.6901 25 8 1.5443 -4.3686 2.9067 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 0.2064 -4.2909 -1.5141 32 1 1.5788 -5.2786 -2.0696 33 1 -0.7890 -6.2767 -0.4214 34 1 -0.5258 -6.5778 -2.1561 35 1 1.5753 -7.7677 -1.6494 36 1 0.2254 -8.5011 -0.7480 37 1 2.2406 -8.1737 0.6915 38 1 0.8501 -7.2222 1.2664 39 1 3.6893 -7.8616 1.5491 40 1 5.0606 -6.7338 1.7461 41 1 3.5461 -8.0841 3.8192 42 1 4.9174 -6.9564 4.0163 43 1 2.3448 -6.3798 4.8673 44 1 3.5179 -5.1201 4.3747 45 1 0.8997 -4.2628 3.6197 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253088919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:53 Heat of formation + Delta-G solvation = -86.934931 kcal Electronic energy + Delta-G solvation = -22209.701018 eV Core-core repulsion = 19225.060651 eV Total energy + Delta-G solvation = -2984.640367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04770 -38.56929 -36.05094 -35.66139 -34.27956 -32.62794 -30.88903 -28.74681 -28.03807 -26.70233 -24.73256 -23.61541 -21.86720 -21.71495 -20.90316 -19.69967 -18.55327 -18.19434 -16.87043 -16.56537 -16.14703 -15.85745 -15.60659 -15.20682 -15.04866 -14.70293 -14.42006 -14.19415 -13.97433 -13.78091 -13.46707 -13.12981 -12.96525 -12.85407 -12.61411 -12.44703 -12.41406 -12.09708 -11.98013 -11.80271 -11.66878 -11.54849 -11.30132 -11.19873 -10.99739 -10.91496 -10.71995 -10.50465 -10.39509 -8.98106 -8.17062 -6.27209 1.37371 1.38613 1.51686 2.40887 3.07790 3.15529 3.46595 3.68732 3.78434 3.95443 4.03125 4.11207 4.23325 4.27706 4.38484 4.49127 4.54838 4.55772 4.59240 4.65014 4.73192 4.76913 4.86483 4.87214 4.95944 5.04758 5.08226 5.11823 5.14997 5.18198 5.24898 5.26624 5.30965 5.35327 5.46700 5.50372 5.51293 5.60777 5.81822 5.88429 6.22402 6.46866 6.52501 6.90308 7.17952 7.40451 8.95357 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.006090 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.047623 B = 4596.821880 C = 5568.387612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.051 3.949 10 C 0.089 3.911 11 N -0.523 5.523 12 C 0.052 3.948 13 C -0.109 4.109 14 C -0.114 4.114 15 C -0.109 4.109 16 C 0.091 3.909 17 H 0.024 0.976 18 C -0.088 4.088 19 H 0.052 0.948 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.157 4.157 23 C 0.110 3.890 24 H 0.072 0.928 25 O -0.567 6.567 26 H 0.263 0.737 27 H -0.019 1.019 28 H -0.003 1.003 29 H 0.067 0.933 30 H -0.006 1.006 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.926 -19.591 4.929 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.014 3.986 10 C -0.039 4.039 11 N -0.248 5.248 12 C -0.076 4.076 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.146 4.146 16 C -0.018 4.018 17 H 0.042 0.958 18 C -0.106 4.106 19 H 0.070 0.930 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.195 4.195 23 C 0.051 3.949 24 H 0.090 0.910 25 O -0.372 6.372 26 H 0.071 0.929 27 H -0.001 1.001 28 H 0.016 0.984 29 H 0.085 0.915 30 H 0.012 0.988 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.833 -19.369 4.774 20.526 hybrid contribution 0.421 1.489 -0.365 1.590 sum 5.254 -17.879 4.410 19.150 Atomic orbital electron populations 1.70122 1.07697 1.27477 1.51830 1.25912 0.95746 1.03060 0.94785 0.85433 0.78922 0.78938 0.77936 1.18958 1.20144 1.20111 1.21637 0.93074 0.92735 1.50365 0.93165 1.18742 0.93919 0.91532 0.94409 1.21886 0.95276 0.89116 0.97583 1.61885 1.30827 1.01507 1.30542 1.22108 0.97029 0.98757 0.89737 1.21543 0.97794 0.93437 1.01886 1.21570 0.98733 0.97582 0.97272 1.21774 0.99139 0.95390 0.98292 1.21645 0.92959 0.91768 0.95394 0.95766 1.22090 0.95989 0.98718 0.93837 0.92969 1.22237 0.98866 0.97523 0.96800 1.21993 0.99502 0.99006 0.94601 1.23073 0.98824 0.99333 0.98298 1.22854 0.94053 0.84443 0.93512 0.91024 1.86773 1.62045 1.30941 1.57458 0.92868 1.00075 0.98416 0.91455 0.98788 0.93514 0.96260 0.92166 0.90596 0.92120 0.89636 0.88967 0.91273 0.89265 0.91568 0.89767 0.91219 0.90209 0.92614 0.77616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.34 13.29 21.45 0.28 -59.06 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 46.59 29.54 68.60 2.03 48.62 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.54 -33.12 9.11 25.60 0.23 -32.89 16 8 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 9 C 0.05 2.98 4.98 29.85 0.15 3.13 16 10 C 0.09 4.22 4.16 86.30 0.36 4.58 16 11 N -0.52 -20.33 3.89 -871.08 -3.39 -23.72 16 12 C 0.05 1.91 5.30 86.33 0.46 2.37 16 13 C -0.11 -3.01 6.09 30.65 0.19 -2.82 16 14 C -0.11 -2.46 6.00 30.68 0.18 -2.28 16 15 C -0.11 -2.46 4.78 30.65 0.15 -2.31 16 16 C 0.09 2.73 1.72 44.94 0.08 2.81 16 17 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 18 C -0.09 -2.52 2.03 -9.72 -0.02 -2.54 16 19 H 0.05 1.88 6.04 -2.39 -0.01 1.86 16 20 C -0.12 -2.34 6.19 31.32 0.19 -2.15 16 21 C -0.11 -1.97 6.80 31.32 0.21 -1.76 16 22 C -0.16 -3.41 6.55 31.68 0.21 -3.21 16 23 C 0.11 3.03 3.40 31.89 0.11 3.14 16 24 H 0.07 1.83 5.69 -2.39 -0.01 1.81 16 25 O -0.57 -20.28 11.96 -148.98 -1.78 -22.06 16 26 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 27 H -0.02 -1.19 6.56 -2.39 -0.02 -1.20 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 29 H 0.07 3.27 4.89 -2.39 -0.01 3.26 16 30 H -0.01 -0.30 8.08 -2.39 -0.02 -0.31 16 31 H 0.05 2.03 6.39 -2.38 -0.02 2.02 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.57 6.08 -2.39 -0.01 1.55 16 38 H 0.07 1.65 6.01 -2.39 -0.01 1.63 16 39 H 0.09 1.46 5.68 -2.39 -0.01 1.45 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.38 10.69 9.12 -74.06 -0.68 10.01 16 Total: -1.00 -72.28 330.88 0.39 -71.89 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.29 Total: 17.64 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 2.96 Total: -33.31 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -3.10 Total: -82.78 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.78 Total: -22.06 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -72.28 0.39 -71.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253088919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.047 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds