Wall clock time and date at job start Mon Mar 30 2020 07:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99792 * 2 1 4 4 H 1.48501 * 109.46929 * 269.99893 * 3 2 1 5 5 H 1.48495 * 109.47299 * 30.00286 * 3 2 1 6 6 H 1.48500 * 109.46757 * 150.00606 * 3 2 1 7 7 C 1.37872 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00246 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47361 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46903 * 179.97438 * 10 9 7 12 12 C 1.46838 * 111.00060 * 45.79381 * 11 10 9 13 13 C 1.53036 * 109.52570 * 185.83423 * 12 11 10 14 14 C 1.53117 * 109.27845 * 300.82437 * 13 12 11 15 15 C 1.53122 * 109.16431 * 57.65180 * 14 13 12 16 16 C 1.46851 * 110.99566 * 170.00046 * 11 10 9 17 17 H 1.08999 * 109.45666 * 294.17437 * 16 11 10 18 18 C 1.53009 * 109.46255 * 54.14675 * 16 11 10 19 19 H 1.09000 * 110.01482 * 299.59887 * 18 16 11 20 20 C 1.54263 * 110.07069 * 61.01294 * 18 16 11 21 21 C 1.55238 * 104.23046 * 142.91816 * 20 18 16 22 22 C 1.54881 * 102.58645 * 322.08169 * 21 20 18 23 23 C 1.53872 * 110.02970 * 178.20151 * 18 16 11 24 24 H 1.08993 * 110.07442 * 359.97402 * 23 18 16 25 25 O 1.42903 * 110.02883 * 121.38471 * 23 18 16 26 26 H 0.96994 * 119.99616 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47147 * 59.99446 * 9 7 2 28 28 H 1.08999 * 109.46850 * 300.00004 * 9 7 2 29 29 H 1.09007 * 109.46883 * 60.00150 * 10 9 7 30 30 H 1.08999 * 109.47475 * 300.00028 * 10 9 7 31 31 H 1.09000 * 109.46525 * 65.81786 * 12 11 10 32 32 H 1.08996 * 109.46286 * 305.85000 * 12 11 10 33 33 H 1.09000 * 109.50755 * 180.87972 * 13 12 11 34 34 H 1.09005 * 109.50113 * 60.76345 * 13 12 11 35 35 H 1.09002 * 109.52045 * 297.74328 * 14 13 12 36 36 H 1.09003 * 109.52362 * 177.55608 * 14 13 12 37 37 H 1.08997 * 109.50231 * 182.40747 * 15 14 13 38 38 H 1.08998 * 109.50382 * 62.28659 * 15 14 13 39 39 H 1.09003 * 110.48645 * 261.59383 * 20 18 16 40 40 H 1.09001 * 110.49187 * 24.10313 * 20 18 16 41 41 H 1.09000 * 110.89753 * 203.79116 * 21 20 18 42 42 H 1.09003 * 110.76313 * 80.31706 * 21 20 18 43 43 H 1.09003 * 110.48901 * 279.18343 * 22 21 20 44 44 H 1.09006 * 110.48377 * 156.67800 * 22 21 20 45 45 H 0.96705 * 113.99613 * 178.62077 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4906 -2.6365 -0.0022 12 6 6.0176 -1.6803 0.9797 13 6 7.5403 -1.6008 0.8499 14 6 8.1412 -2.9889 1.0880 15 6 7.5398 -3.9760 0.0838 16 6 6.0170 -3.9866 0.2360 17 1 5.7550 -4.3057 1.2447 18 6 5.4100 -4.9569 -0.7795 19 1 4.3253 -4.9776 -0.6736 20 6 5.7930 -4.5320 -2.2122 21 6 6.0173 -5.8733 -2.9609 22 6 6.7006 -6.7512 -1.8833 23 6 5.9871 -6.3679 -0.5704 24 1 6.7000 -6.3621 0.2540 25 8 4.9323 -7.2928 -0.2984 26 1 -0.4849 0.8400 0.0004 27 1 3.8753 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6578 -3.1506 -0.8908 30 1 3.6586 -3.1503 0.8892 31 1 5.7555 -2.0104 1.9849 32 1 5.5856 -0.6965 0.7966 33 1 7.9327 -0.9027 1.5893 34 1 7.8028 -1.2574 -0.1508 35 1 7.9119 -3.3159 2.1022 36 1 9.2220 -2.9459 0.9538 37 1 7.9316 -4.9747 0.2759 38 1 7.8022 -3.6701 -0.9289 39 1 4.9812 -3.9693 -2.6731 40 1 6.7085 -3.9406 -2.2029 41 1 6.6743 -5.7341 -3.8194 42 1 5.0661 -6.3084 -3.2676 43 1 7.7641 -6.5202 -1.8211 44 1 6.5531 -7.8086 -2.1030 45 1 5.2303 -8.2049 -0.1779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253088920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:56 Heat of formation + Delta-G solvation = -67.432660 kcal Electronic energy + Delta-G solvation = -21973.213659 eV Core-core repulsion = 18989.418974 eV Total energy + Delta-G solvation = -2983.794685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.07037 -37.80496 -34.89890 -34.27904 -32.47013 -31.51648 -29.46388 -27.80059 -27.32747 -25.12601 -23.30422 -22.24178 -21.09564 -20.08147 -19.69221 -18.57500 -17.29136 -16.73669 -15.72529 -15.47732 -14.79094 -14.68895 -14.39193 -14.33129 -13.77346 -13.53501 -13.00667 -12.89851 -12.71579 -12.52646 -12.45807 -12.12305 -11.60616 -11.47625 -11.32176 -11.12009 -10.98403 -10.76090 -10.67161 -10.56978 -10.27476 -10.18501 -10.07514 -9.92290 -9.84332 -9.62128 -9.58121 -9.07793 -8.50257 -7.72810 -6.01525 -3.99280 3.33337 3.40170 3.43466 4.06540 4.39078 4.47663 4.59581 4.72564 4.91183 4.99793 5.03012 5.05990 5.30273 5.33043 5.39276 5.48601 5.54965 5.65457 5.66199 5.73335 5.80170 5.82365 5.86740 5.96330 5.98933 6.03724 6.10334 6.13951 6.18944 6.25401 6.26777 6.37870 6.44209 6.52521 6.55722 6.65927 6.81956 7.20515 7.39007 7.63057 7.65640 7.72845 7.89962 8.57014 9.03457 9.60849 11.12020 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.005685 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.511716 B = 4923.797159 C = 5772.543117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.014 4.014 10 C 0.070 3.930 11 N -0.532 5.532 12 C 0.050 3.950 13 C -0.117 4.117 14 C -0.120 4.120 15 C -0.115 4.115 16 C 0.095 3.905 17 H 0.035 0.965 18 C -0.081 4.081 19 H 0.089 0.911 20 C -0.108 4.108 21 C -0.124 4.124 22 C -0.154 4.154 23 C 0.102 3.898 24 H 0.057 0.943 25 O -0.563 6.563 26 H 0.262 0.738 27 H 0.017 0.983 28 H 0.020 0.980 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.419 -11.464 -1.183 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.056 4.056 11 N -0.257 5.257 12 C -0.078 4.078 13 C -0.155 4.155 14 C -0.157 4.157 15 C -0.153 4.153 16 C -0.014 4.014 17 H 0.053 0.947 18 C -0.100 4.100 19 H 0.108 0.892 20 C -0.145 4.145 21 C -0.162 4.162 22 C -0.192 4.192 23 C 0.043 3.957 24 H 0.075 0.925 25 O -0.368 6.368 26 H 0.072 0.928 27 H 0.036 0.964 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 18.049 -10.642 -1.687 21.021 hybrid contribution 0.339 0.106 0.916 0.983 sum 18.388 -10.536 -0.771 21.207 Atomic orbital electron populations 1.69921 1.06295 1.26824 1.51268 1.24998 0.94700 0.99095 0.94579 0.86763 0.80254 0.83616 0.78533 1.20239 1.21507 1.19099 1.21088 0.89421 0.94505 1.50730 0.91103 1.19716 0.96791 0.91992 0.96616 1.22134 0.83680 0.99970 0.99841 1.62043 1.09489 1.05037 1.49121 1.22179 0.94196 0.98145 0.93311 1.21610 0.95507 0.96377 1.01963 1.21578 0.99282 0.95886 0.99001 1.21774 0.94598 0.98497 1.00390 1.21557 0.94158 0.89451 0.96253 0.94729 1.21779 1.01816 0.90746 0.95638 0.89241 1.22413 1.02520 0.96201 0.93360 1.22554 1.00284 0.96185 0.97170 1.23061 0.99813 0.99907 0.96386 1.22582 0.88177 0.89717 0.95248 0.92545 1.86613 1.35612 1.20611 1.94011 0.92777 0.96443 0.96193 0.91107 0.95764 0.95499 0.89461 0.92136 0.91296 0.92646 0.92336 0.92186 0.90613 0.91012 0.90551 0.91869 0.91492 0.91162 0.91621 0.78237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.07 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 9 C -0.01 -0.33 3.29 -27.89 -0.09 -0.42 16 10 C 0.07 1.47 4.31 -3.82 -0.02 1.45 16 11 N -0.53 -9.18 4.29 -226.68 -0.97 -10.15 16 12 C 0.05 0.82 4.85 -3.84 -0.02 0.80 16 13 C -0.12 -1.52 6.09 -26.65 -0.16 -1.69 16 14 C -0.12 -1.37 6.00 -26.61 -0.16 -1.53 16 15 C -0.12 -1.36 4.83 -26.65 -0.13 -1.49 16 16 C 0.09 1.38 1.52 -67.71 -0.10 1.28 16 17 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 18 C -0.08 -1.15 2.04 -89.50 -0.18 -1.34 16 19 H 0.09 1.55 6.43 -51.93 -0.33 1.21 16 20 C -0.11 -1.43 5.80 -24.88 -0.14 -1.57 16 21 C -0.12 -1.38 6.93 -24.55 -0.17 -1.55 16 22 C -0.15 -1.50 6.54 -25.08 -0.16 -1.66 16 23 C 0.10 1.19 3.38 -25.62 -0.09 1.10 16 24 H 0.06 0.61 6.20 -51.93 -0.32 0.29 16 25 O -0.56 -7.04 13.22 -35.23 -0.47 -7.50 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.02 0.42 5.27 -51.93 -0.27 0.15 16 28 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 29 H 0.07 1.51 6.68 -51.93 -0.35 1.16 16 30 H 0.02 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 1.60 5.81 -51.93 -0.30 1.30 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.61 6.39 -51.93 -0.33 0.28 16 38 H 0.08 0.90 6.01 -51.93 -0.31 0.59 16 39 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 40 H 0.08 0.99 5.68 -51.93 -0.29 0.69 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 45 H 0.37 2.84 9.08 45.56 0.41 3.26 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -31.64 329.25 -9.37 -41.01 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -7.14 Total: 1.93 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.86 Total: -20.13 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.20 Total: -37.68 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.47 Total: -7.50 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.64 -9.37 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253088920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.424 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds