Wall clock time and date at job start Mon Mar 30 2020 07:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86799 * 119.99792 * 2 1 4 4 H 1.48501 * 109.46929 * 269.99893 * 3 2 1 5 5 H 1.48495 * 109.47299 * 30.00286 * 3 2 1 6 6 H 1.48500 * 109.46757 * 150.00606 * 3 2 1 7 7 C 1.37872 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00246 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00200 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47361 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.46903 * 179.97438 * 10 9 7 12 12 C 1.46838 * 111.00060 * 45.79381 * 11 10 9 13 13 C 1.53036 * 109.52570 * 185.83423 * 12 11 10 14 14 C 1.53117 * 109.27845 * 300.82437 * 13 12 11 15 15 C 1.53122 * 109.16431 * 57.65180 * 14 13 12 16 16 C 1.46851 * 110.99566 * 170.00046 * 11 10 9 17 17 H 1.08999 * 109.45666 * 294.17437 * 16 11 10 18 18 C 1.53009 * 109.46255 * 54.14675 * 16 11 10 19 19 H 1.09000 * 110.01482 * 299.59887 * 18 16 11 20 20 C 1.54263 * 110.07069 * 61.01294 * 18 16 11 21 21 C 1.55238 * 104.23046 * 142.91816 * 20 18 16 22 22 C 1.54881 * 102.58645 * 322.08169 * 21 20 18 23 23 C 1.53872 * 110.02970 * 178.20151 * 18 16 11 24 24 H 1.08993 * 110.07442 * 359.97402 * 23 18 16 25 25 O 1.42903 * 110.02883 * 121.38471 * 23 18 16 26 26 H 0.96994 * 119.99616 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47147 * 59.99446 * 9 7 2 28 28 H 1.08999 * 109.46850 * 300.00004 * 9 7 2 29 29 H 1.09007 * 109.46883 * 60.00150 * 10 9 7 30 30 H 1.08999 * 109.47475 * 300.00028 * 10 9 7 31 31 H 1.09000 * 109.46525 * 65.81786 * 12 11 10 32 32 H 1.08996 * 109.46286 * 305.85000 * 12 11 10 33 33 H 1.09000 * 109.50755 * 180.87972 * 13 12 11 34 34 H 1.09005 * 109.50113 * 60.76345 * 13 12 11 35 35 H 1.09002 * 109.52045 * 297.74328 * 14 13 12 36 36 H 1.09003 * 109.52362 * 177.55608 * 14 13 12 37 37 H 1.08997 * 109.50231 * 182.40747 * 15 14 13 38 38 H 1.08998 * 109.50382 * 62.28659 * 15 14 13 39 39 H 1.09003 * 110.48645 * 261.59383 * 20 18 16 40 40 H 1.09001 * 110.49187 * 24.10313 * 20 18 16 41 41 H 1.09000 * 110.89753 * 203.79116 * 21 20 18 42 42 H 1.09003 * 110.76313 * 80.31706 * 21 20 18 43 43 H 1.09003 * 110.48901 * 279.18343 * 22 21 20 44 44 H 1.09006 * 110.48377 * 156.67800 * 22 21 20 45 45 H 0.96705 * 113.99613 * 178.62077 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4906 -2.6365 -0.0022 12 6 6.0176 -1.6803 0.9797 13 6 7.5403 -1.6008 0.8499 14 6 8.1412 -2.9889 1.0880 15 6 7.5398 -3.9760 0.0838 16 6 6.0170 -3.9866 0.2360 17 1 5.7550 -4.3057 1.2447 18 6 5.4100 -4.9569 -0.7795 19 1 4.3253 -4.9776 -0.6736 20 6 5.7930 -4.5320 -2.2122 21 6 6.0173 -5.8733 -2.9609 22 6 6.7006 -6.7512 -1.8833 23 6 5.9871 -6.3679 -0.5704 24 1 6.7000 -6.3621 0.2540 25 8 4.9323 -7.2928 -0.2984 26 1 -0.4849 0.8400 0.0004 27 1 3.8753 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6578 -3.1506 -0.8908 30 1 3.6586 -3.1503 0.8892 31 1 5.7555 -2.0104 1.9849 32 1 5.5856 -0.6965 0.7966 33 1 7.9327 -0.9027 1.5893 34 1 7.8028 -1.2574 -0.1508 35 1 7.9119 -3.3159 2.1022 36 1 9.2220 -2.9459 0.9538 37 1 7.9316 -4.9747 0.2759 38 1 7.8022 -3.6701 -0.9289 39 1 4.9812 -3.9693 -2.6731 40 1 6.7085 -3.9406 -2.2029 41 1 6.6743 -5.7341 -3.8194 42 1 5.0661 -6.3084 -3.2676 43 1 7.7641 -6.5202 -1.8211 44 1 6.5531 -7.8086 -2.1030 45 1 5.2303 -8.2049 -0.1779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253088920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:56 Heat of formation + Delta-G solvation = -89.902024 kcal Electronic energy + Delta-G solvation = -21974.188004 eV Core-core repulsion = 18989.418974 eV Total energy + Delta-G solvation = -2984.769029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.20743 -38.90903 -36.07217 -35.73978 -34.39395 -32.67630 -31.25468 -28.75821 -28.39134 -26.82685 -24.77620 -23.49531 -22.04693 -21.62395 -20.91273 -19.76156 -19.05389 -18.10727 -16.83506 -16.58896 -16.35148 -15.96708 -15.84769 -15.65092 -15.19724 -14.74652 -14.60300 -14.33887 -14.06324 -13.91183 -13.41921 -13.25698 -13.12367 -12.91350 -12.62531 -12.45624 -12.13255 -11.99645 -11.89672 -11.82677 -11.71285 -11.61212 -11.57219 -11.36109 -11.19775 -10.95545 -10.90830 -10.77502 -10.70281 -9.19753 -8.33043 -6.38048 1.33326 1.35289 1.47419 2.33377 2.88636 3.01944 3.38332 3.61650 3.73850 3.91960 4.00115 4.06891 4.10771 4.23340 4.32955 4.40858 4.45345 4.52602 4.54825 4.58655 4.65353 4.75072 4.81130 4.87866 4.90702 4.90786 5.02715 5.07867 5.09616 5.12025 5.17055 5.21991 5.27506 5.28090 5.32538 5.41394 5.46287 5.50770 5.59983 5.63352 6.12658 6.25795 6.34810 6.69435 6.97904 7.26407 8.84130 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.005685 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.511716 B = 4923.797159 C = 5772.543117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.246 1.246 7 C -0.536 4.536 8 H 0.025 0.975 9 C -0.002 4.002 10 C 0.087 3.913 11 N -0.529 5.529 12 C 0.044 3.956 13 C -0.110 4.110 14 C -0.117 4.117 15 C -0.108 4.108 16 C 0.094 3.906 17 H 0.018 0.982 18 C -0.086 4.086 19 H 0.043 0.957 20 C -0.106 4.106 21 C -0.122 4.122 22 C -0.143 4.143 23 C 0.104 3.896 24 H 0.073 0.927 25 O -0.590 6.590 26 H 0.268 0.732 27 H 0.024 0.976 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.002 0.998 31 H 0.018 0.982 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.607 -11.437 -1.333 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.190 4.190 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.170 1.170 7 C -0.574 4.574 8 H 0.044 0.956 9 C -0.040 4.040 10 C -0.041 4.041 11 N -0.254 5.254 12 C -0.084 4.084 13 C -0.148 4.148 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.014 4.014 17 H 0.036 0.964 18 C -0.105 4.105 19 H 0.062 0.938 20 C -0.143 4.143 21 C -0.160 4.160 22 C -0.180 4.180 23 C 0.045 3.955 24 H 0.091 0.909 25 O -0.399 6.399 26 H 0.076 0.924 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 22.261 -10.651 -1.834 24.745 hybrid contribution -1.088 0.008 0.982 1.466 sum 21.172 -10.643 -0.851 23.712 Atomic orbital electron populations 1.70076 1.08355 1.28291 1.52387 1.26014 0.95639 1.03566 0.93796 0.85595 0.79418 0.77878 0.79371 1.18974 1.20671 1.16994 1.21395 0.91997 0.93084 1.50974 0.95643 1.19564 0.93569 0.94152 0.96711 1.21750 0.86717 0.97395 0.98192 1.62053 1.06498 1.07134 1.49669 1.22266 0.97081 0.96602 0.92454 1.21588 0.92269 0.98212 1.02736 1.21592 1.00820 0.94305 0.98749 1.21767 0.91432 1.00330 1.00967 1.21684 0.96658 0.87662 0.95422 0.96366 1.21775 0.99202 0.93118 0.96356 0.93812 1.22371 1.01679 0.97399 0.92844 1.22541 1.00301 0.94939 0.98211 1.23028 1.00514 1.00503 0.93985 1.22575 0.87961 0.87856 0.97133 0.90924 1.86570 1.36795 1.22320 1.94205 0.92360 0.95800 0.95927 0.92531 0.97952 0.96397 0.91495 0.90391 0.91044 0.92689 0.89385 0.89578 0.90072 0.94094 0.89475 0.89872 0.93042 0.88759 0.89923 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.95 45.75 27.47 68.60 1.88 47.63 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.54 -32.77 9.66 25.60 0.25 -32.52 16 8 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 9 C 0.00 -0.12 3.29 29.85 0.10 -0.02 16 10 C 0.09 3.86 4.31 86.30 0.37 4.23 16 11 N -0.53 -18.42 4.29 -871.09 -3.73 -22.15 16 12 C 0.04 1.41 4.85 86.33 0.42 1.83 16 13 C -0.11 -2.56 6.09 30.65 0.19 -2.37 16 14 C -0.12 -2.22 6.00 30.67 0.18 -2.04 16 15 C -0.11 -2.17 4.83 30.65 0.15 -2.03 16 16 C 0.09 2.70 1.52 44.94 0.07 2.77 16 17 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 18 C -0.09 -2.47 2.04 -10.07 -0.02 -2.49 16 19 H 0.04 1.65 6.43 -2.39 -0.02 1.63 16 20 C -0.11 -2.78 5.80 31.79 0.18 -2.59 16 21 C -0.12 -2.52 6.93 32.00 0.22 -2.30 16 22 C -0.14 -2.31 6.54 31.67 0.21 -2.10 16 23 C 0.10 2.24 3.38 31.32 0.11 2.35 16 24 H 0.07 1.34 6.20 -2.39 -0.01 1.32 16 25 O -0.59 -14.39 13.22 -148.98 -1.97 -16.36 16 26 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 27 H 0.02 1.17 5.27 -2.39 -0.01 1.16 16 28 H 0.02 1.11 7.57 -2.39 -0.02 1.10 16 29 H 0.06 2.63 6.68 -2.38 -0.02 2.61 16 30 H 0.00 0.11 8.08 -2.39 -0.02 0.09 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 2.41 5.81 -2.39 -0.01 2.39 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.34 6.39 -2.39 -0.02 1.33 16 38 H 0.08 1.61 6.01 -2.39 -0.01 1.59 16 39 H 0.04 1.30 8.01 -2.39 -0.02 1.28 16 40 H 0.09 2.09 5.68 -2.39 -0.01 2.07 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.10 8.05 -2.38 -0.02 1.08 16 45 H 0.39 5.37 9.08 -74.05 -0.67 4.70 16 Total: -1.00 -72.71 329.25 -0.40 -73.11 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.23 Total: 15.50 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 2.89 Total: -36.40 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -3.43 Total: -83.49 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -1.97 Total: -16.36 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.88 Total: 47.63 kcal Total: -72.71 -0.40 -73.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253088920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.789 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds