Wall clock time and date at job start Mon Mar 30 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48507 * 109.47198 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47475 * 119.99948 * 3 2 1 6 6 H 1.48500 * 109.47357 * 240.00275 * 3 2 1 7 7 C 1.37874 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00362 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47086 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47266 * 180.02562 * 10 9 7 12 12 C 1.46852 * 111.00265 * 64.65640 * 11 10 9 13 13 C 1.53032 * 109.52277 * 185.84135 * 12 11 10 14 14 C 1.53122 * 109.28233 * 300.82186 * 13 12 11 15 15 C 1.53122 * 109.15985 * 57.65360 * 14 13 12 16 16 C 1.46845 * 111.00230 * 188.87216 * 11 10 9 17 17 H 1.09005 * 109.45831 * 294.17267 * 16 11 10 18 18 C 1.53000 * 109.46481 * 54.13739 * 16 11 10 19 19 H 1.08994 * 110.01731 * 305.18772 * 18 16 11 20 20 C 1.54270 * 110.02768 * 66.57383 * 18 16 11 21 21 C 1.54888 * 104.19369 * 142.89626 * 20 18 16 22 22 C 1.54892 * 102.74822 * 322.05537 * 21 20 18 23 23 C 1.53877 * 110.03351 * 183.79010 * 18 16 11 24 24 H 1.09003 * 110.02570 * 121.43533 * 23 18 16 25 25 O 1.42898 * 110.02992 * 0.02562 * 23 18 16 26 26 H 0.96994 * 119.99971 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47540 * 300.00458 * 9 7 2 28 28 H 1.09003 * 109.46677 * 60.00528 * 9 7 2 29 29 H 1.09000 * 109.46836 * 300.00441 * 10 9 7 30 30 H 1.08998 * 109.46920 * 59.99932 * 10 9 7 31 31 H 1.08998 * 109.46005 * 305.85923 * 12 11 10 32 32 H 1.09000 * 109.45685 * 65.84107 * 12 11 10 33 33 H 1.09001 * 109.50421 * 60.76027 * 13 12 11 34 34 H 1.08998 * 109.50336 * 180.84410 * 13 12 11 35 35 H 1.08999 * 109.52692 * 177.56113 * 14 13 12 36 36 H 1.08997 * 109.52348 * 297.69229 * 14 13 12 37 37 H 1.09008 * 109.50057 * 62.28698 * 15 14 13 38 38 H 1.08992 * 109.50475 * 182.36970 * 15 14 13 39 39 H 1.08999 * 110.48835 * 261.57217 * 20 18 16 40 40 H 1.09004 * 110.48783 * 24.22200 * 20 18 16 41 41 H 1.08997 * 110.75992 * 80.37113 * 21 20 18 42 42 H 1.09007 * 110.75705 * 203.56138 * 21 20 18 43 43 H 1.09004 * 110.48221 * 156.61982 * 22 21 20 44 44 H 1.08993 * 110.48923 * 279.12772 * 22 21 20 45 45 H 0.96706 * 113.99383 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5110 -4.9342 0.0033 12 6 0.7400 -5.0974 -1.2359 13 6 -0.1226 -6.3577 -1.1393 14 6 0.7813 -7.5731 -0.9147 15 6 1.6084 -7.3564 0.3556 16 6 2.4208 -6.0671 0.2157 17 1 3.0969 -6.1543 -0.6349 18 6 3.2338 -5.8358 1.4910 19 1 3.7453 -4.8748 1.4383 20 6 2.3061 -5.8738 2.7231 21 6 3.1537 -6.5722 3.8153 22 6 3.9162 -7.6570 3.0146 23 6 4.2583 -6.9690 1.6758 24 1 5.2671 -6.5576 1.7136 25 8 4.1513 -7.9055 0.6018 26 1 -0.4850 -0.8400 0.0004 27 1 0.6247 -2.5563 0.8919 28 1 0.6242 -2.5574 -0.8881 29 1 2.8721 -3.6050 -0.8873 30 1 2.8720 -3.6034 0.8927 31 1 0.0984 -4.2283 -1.3815 32 1 1.4240 -5.1894 -2.0796 33 1 -0.8162 -6.2608 -0.3041 34 1 -0.6834 -6.4867 -2.0651 35 1 0.1682 -8.4672 -0.8021 36 1 1.4481 -7.6938 -1.7684 37 1 0.9419 -7.2752 1.2143 38 1 2.2843 -8.1995 0.4979 39 1 2.0423 -4.8628 3.0334 40 1 1.4089 -6.4541 2.5074 41 1 3.8497 -5.8691 4.2727 42 1 2.5122 -7.0255 4.5711 43 1 4.8274 -7.9472 3.5377 44 1 3.2798 -8.5261 2.8481 45 1 4.7718 -8.6448 0.6614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253088921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:59 Heat of formation + Delta-G solvation = -68.074940 kcal Electronic energy + Delta-G solvation = -22115.813864 eV Core-core repulsion = 19131.991328 eV Total energy + Delta-G solvation = -2983.822536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04043 -37.60138 -34.98915 -34.24914 -32.57973 -31.32966 -28.76682 -27.55864 -27.35460 -24.58806 -23.09900 -22.27593 -21.06194 -20.35852 -19.79758 -18.43365 -17.54650 -16.61489 -15.69388 -15.13182 -14.86515 -14.57965 -13.99072 -13.90687 -13.81600 -13.63007 -13.28727 -13.06040 -12.66768 -12.33223 -11.88978 -11.84018 -11.40748 -11.35965 -11.21263 -10.99862 -10.94558 -10.77190 -10.66779 -10.41740 -10.21717 -10.12783 -10.00363 -9.95768 -9.85254 -9.53569 -9.20565 -8.49437 -8.24578 -7.58547 -6.30144 -3.98181 3.46443 3.48695 3.67373 4.18467 4.36944 4.59663 4.61620 4.72262 4.97139 5.17789 5.23557 5.26653 5.34177 5.44109 5.47471 5.53683 5.60209 5.68844 5.73407 5.82235 5.84850 5.93876 6.00922 6.11827 6.12671 6.19502 6.20544 6.25347 6.32806 6.38510 6.46078 6.49703 6.56652 6.60987 6.68668 6.82907 6.95554 7.42182 7.56977 7.61084 7.84529 7.91827 8.32543 8.53172 8.95566 9.73923 11.10971 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.005442 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.061441 B = 5143.573656 C = 5970.667878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.602 4.602 8 H 0.045 0.955 9 C 0.016 3.984 10 C 0.066 3.934 11 N -0.536 5.536 12 C 0.057 3.943 13 C -0.116 4.116 14 C -0.118 4.118 15 C -0.114 4.114 16 C 0.109 3.891 17 H 0.036 0.964 18 C -0.085 4.085 19 H 0.083 0.917 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.154 4.154 23 C 0.104 3.896 24 H 0.054 0.946 25 O -0.551 6.551 26 H 0.269 0.731 27 H 0.014 0.986 28 H 0.007 0.993 29 H 0.015 0.985 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.022 0.978 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.603 -18.210 3.612 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.188 4.188 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.640 4.640 8 H 0.064 0.936 9 C -0.021 4.021 10 C -0.060 4.060 11 N -0.261 5.261 12 C -0.071 4.071 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.152 4.152 16 C 0.001 3.999 17 H 0.054 0.946 18 C -0.103 4.103 19 H 0.102 0.898 20 C -0.149 4.149 21 C -0.164 4.164 22 C -0.192 4.192 23 C 0.044 3.956 24 H 0.072 0.928 25 O -0.356 6.356 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.025 0.975 29 H 0.034 0.966 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.609 -16.126 3.802 17.492 hybrid contribution 1.353 -1.963 -0.525 2.442 sum 6.962 -18.090 3.277 19.658 Atomic orbital electron populations 1.70763 1.06849 1.30671 1.46684 1.25796 0.96563 1.02555 0.93911 0.83567 0.74893 0.75497 0.76418 1.20778 1.21507 1.21571 1.22021 0.94141 0.92170 1.55713 0.93622 1.19214 0.94635 0.91922 0.96334 1.22226 0.96545 0.88310 0.98946 1.62032 1.26587 1.02237 1.35233 1.22044 0.96527 0.98205 0.90311 1.21599 0.97999 0.94562 1.01243 1.21565 0.98146 0.97346 0.98518 1.21954 0.98452 0.97694 0.97052 1.21231 0.92322 0.90979 0.95391 0.94632 1.21979 0.95341 0.96906 0.96121 0.89850 1.22440 0.98128 1.01469 0.92884 1.22454 0.98793 0.97409 0.97731 1.23101 1.00333 0.99185 0.96542 1.22529 0.97996 0.89541 0.85500 0.92773 1.86725 1.61942 1.38540 1.48393 0.92017 0.96728 0.97518 0.96644 0.91560 0.90163 0.96014 0.91474 0.92445 0.92803 0.92893 0.91934 0.89254 0.91075 0.90270 0.91685 0.91655 0.92042 0.90726 0.78809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.65 55.43 0.76 -27.86 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.60 -17.59 9.11 -34.44 -0.31 -17.90 16 8 H 0.05 1.31 7.74 -52.49 -0.41 0.91 16 9 C 0.02 0.43 4.19 -27.88 -0.12 0.31 16 10 C 0.07 1.47 4.61 -3.83 -0.02 1.45 16 11 N -0.54 -10.13 4.29 -226.69 -0.97 -11.10 16 12 C 0.06 1.04 5.28 -3.83 -0.02 1.02 16 13 C -0.12 -1.74 6.09 -26.65 -0.16 -1.91 16 14 C -0.12 -1.61 6.00 -26.60 -0.16 -1.77 16 15 C -0.11 -1.60 4.67 -26.65 -0.12 -1.73 16 16 C 0.11 1.75 1.19 -67.72 -0.08 1.67 16 17 H 0.04 0.64 7.71 -51.93 -0.40 0.24 16 18 C -0.08 -1.23 2.38 -89.50 -0.21 -1.45 16 19 H 0.08 1.36 5.88 -51.93 -0.31 1.06 16 20 C -0.11 -1.56 5.97 -25.07 -0.15 -1.71 16 21 C -0.13 -1.38 6.91 -24.74 -0.17 -1.55 16 22 C -0.15 -1.49 6.56 -25.01 -0.16 -1.65 16 23 C 0.10 1.18 4.03 -25.56 -0.10 1.07 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 O -0.55 -5.93 8.96 -35.23 -0.32 -6.25 16 26 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 27 H 0.01 0.41 8.01 -51.93 -0.42 -0.01 16 28 H 0.01 0.19 6.26 -51.93 -0.33 -0.14 16 29 H 0.02 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.07 1.44 5.61 -51.93 -0.29 1.15 16 31 H 0.08 1.62 6.17 -51.93 -0.32 1.30 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.91 5.78 -51.92 -0.30 0.61 16 38 H 0.09 1.17 5.37 -51.93 -0.28 0.89 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.13 5.34 -51.93 -0.28 0.86 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.37 2.35 9.11 45.56 0.42 2.77 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -31.66 328.41 -9.62 -41.29 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.07 Total: 1.99 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -1.89 Total: -23.77 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.22 Total: -38.96 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.32 Total: -6.25 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.66 -9.62 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253088921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.787 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds