Wall clock time and date at job start Mon Mar 30 2020 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99925 * 2 1 4 4 H 1.48507 * 109.47198 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47475 * 119.99948 * 3 2 1 6 6 H 1.48500 * 109.47357 * 240.00275 * 3 2 1 7 7 C 1.37874 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00362 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99641 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47086 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47266 * 180.02562 * 10 9 7 12 12 C 1.46852 * 111.00265 * 64.65640 * 11 10 9 13 13 C 1.53032 * 109.52277 * 185.84135 * 12 11 10 14 14 C 1.53122 * 109.28233 * 300.82186 * 13 12 11 15 15 C 1.53122 * 109.15985 * 57.65360 * 14 13 12 16 16 C 1.46845 * 111.00230 * 188.87216 * 11 10 9 17 17 H 1.09005 * 109.45831 * 294.17267 * 16 11 10 18 18 C 1.53000 * 109.46481 * 54.13739 * 16 11 10 19 19 H 1.08994 * 110.01731 * 305.18772 * 18 16 11 20 20 C 1.54270 * 110.02768 * 66.57383 * 18 16 11 21 21 C 1.54888 * 104.19369 * 142.89626 * 20 18 16 22 22 C 1.54892 * 102.74822 * 322.05537 * 21 20 18 23 23 C 1.53877 * 110.03351 * 183.79010 * 18 16 11 24 24 H 1.09003 * 110.02570 * 121.43533 * 23 18 16 25 25 O 1.42898 * 110.02992 * 0.02562 * 23 18 16 26 26 H 0.96994 * 119.99971 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47540 * 300.00458 * 9 7 2 28 28 H 1.09003 * 109.46677 * 60.00528 * 9 7 2 29 29 H 1.09000 * 109.46836 * 300.00441 * 10 9 7 30 30 H 1.08998 * 109.46920 * 59.99932 * 10 9 7 31 31 H 1.08998 * 109.46005 * 305.85923 * 12 11 10 32 32 H 1.09000 * 109.45685 * 65.84107 * 12 11 10 33 33 H 1.09001 * 109.50421 * 60.76027 * 13 12 11 34 34 H 1.08998 * 109.50336 * 180.84410 * 13 12 11 35 35 H 1.08999 * 109.52692 * 177.56113 * 14 13 12 36 36 H 1.08997 * 109.52348 * 297.69229 * 14 13 12 37 37 H 1.09008 * 109.50057 * 62.28698 * 15 14 13 38 38 H 1.08992 * 109.50475 * 182.36970 * 15 14 13 39 39 H 1.08999 * 110.48835 * 261.57217 * 20 18 16 40 40 H 1.09004 * 110.48783 * 24.22200 * 20 18 16 41 41 H 1.08997 * 110.75992 * 80.37113 * 21 20 18 42 42 H 1.09007 * 110.75705 * 203.56138 * 21 20 18 43 43 H 1.09004 * 110.48221 * 156.61982 * 22 21 20 44 44 H 1.08993 * 110.48923 * 279.12772 * 22 21 20 45 45 H 0.96706 * 113.99383 * 180.02562 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6965 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 7 1.5110 -4.9342 0.0033 12 6 0.7400 -5.0974 -1.2359 13 6 -0.1226 -6.3577 -1.1393 14 6 0.7813 -7.5731 -0.9147 15 6 1.6084 -7.3564 0.3556 16 6 2.4208 -6.0671 0.2157 17 1 3.0969 -6.1543 -0.6349 18 6 3.2338 -5.8358 1.4910 19 1 3.7453 -4.8748 1.4383 20 6 2.3061 -5.8738 2.7231 21 6 3.1537 -6.5722 3.8153 22 6 3.9162 -7.6570 3.0146 23 6 4.2583 -6.9690 1.6758 24 1 5.2671 -6.5576 1.7136 25 8 4.1513 -7.9055 0.6018 26 1 -0.4850 -0.8400 0.0004 27 1 0.6247 -2.5563 0.8919 28 1 0.6242 -2.5574 -0.8881 29 1 2.8721 -3.6050 -0.8873 30 1 2.8720 -3.6034 0.8927 31 1 0.0984 -4.2283 -1.3815 32 1 1.4240 -5.1894 -2.0796 33 1 -0.8162 -6.2608 -0.3041 34 1 -0.6834 -6.4867 -2.0651 35 1 0.1682 -8.4672 -0.8021 36 1 1.4481 -7.6938 -1.7684 37 1 0.9419 -7.2752 1.2143 38 1 2.2843 -8.1995 0.4979 39 1 2.0423 -4.8628 3.0334 40 1 1.4089 -6.4541 2.5074 41 1 3.8497 -5.8691 4.2727 42 1 2.5122 -7.0255 4.5711 43 1 4.8274 -7.9472 3.5377 44 1 3.2798 -8.5261 2.8481 45 1 4.7718 -8.6448 0.6614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253088921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:58 Heat of formation + Delta-G solvation = -89.019682 kcal Electronic energy + Delta-G solvation = -22116.722096 eV Core-core repulsion = 19131.991328 eV Total energy + Delta-G solvation = -2984.730768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23783 -38.79907 -36.16818 -35.89227 -34.38319 -32.57508 -30.68011 -28.56258 -28.44473 -26.47955 -24.84394 -23.60133 -22.18694 -22.01844 -20.89739 -19.69239 -18.97720 -18.37398 -16.82597 -16.54884 -15.98820 -15.92976 -15.69285 -15.29400 -15.13689 -14.90787 -14.79442 -14.48646 -14.23020 -13.79661 -13.37602 -13.30633 -12.94928 -12.71331 -12.51210 -12.46514 -12.16220 -12.04315 -11.91086 -11.89553 -11.76263 -11.58160 -11.50542 -11.18983 -11.06191 -10.97154 -10.68247 -10.56228 -10.37844 -9.18258 -8.71944 -6.41735 1.49896 1.59143 1.78725 2.54250 2.97872 3.13949 3.34753 3.63302 3.72922 3.83544 3.96482 4.07982 4.15441 4.20362 4.34174 4.40263 4.42157 4.44461 4.57727 4.60162 4.64116 4.71459 4.83280 4.85030 4.89529 4.93110 5.01985 5.05610 5.08573 5.13837 5.18915 5.22930 5.24596 5.35638 5.38508 5.40689 5.47398 5.52215 5.66595 5.89942 6.14599 6.24586 6.36422 6.56079 7.02566 7.40913 8.68940 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.005442 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.061441 B = 5143.573656 C = 5970.667878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.037 4.037 3 Si 1.119 2.881 4 H -0.281 1.281 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.621 4.621 8 H 0.048 0.952 9 C 0.025 3.975 10 C 0.085 3.915 11 N -0.540 5.540 12 C 0.055 3.945 13 C -0.110 4.110 14 C -0.114 4.114 15 C -0.107 4.107 16 C 0.112 3.888 17 H 0.020 0.980 18 C -0.092 4.092 19 H 0.056 0.944 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.141 4.141 23 C 0.111 3.889 24 H 0.061 0.939 25 O -0.564 6.564 26 H 0.254 0.746 27 H -0.012 1.012 28 H -0.013 1.013 29 H 0.003 0.997 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.134 -20.184 4.208 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.234 4.234 3 Si 0.939 3.061 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.659 4.659 8 H 0.066 0.934 9 C -0.012 4.012 10 C -0.043 4.043 11 N -0.265 5.265 12 C -0.073 4.073 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.143 4.143 16 C 0.004 3.996 17 H 0.038 0.962 18 C -0.110 4.110 19 H 0.075 0.925 20 C -0.149 4.149 21 C -0.159 4.159 22 C -0.178 4.178 23 C 0.052 3.948 24 H 0.079 0.921 25 O -0.372 6.372 26 H 0.063 0.937 27 H 0.007 0.993 28 H 0.006 0.994 29 H 0.021 0.979 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.101 0.899 45 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 7.155 -18.156 4.399 20.005 hybrid contribution 0.851 -1.377 -0.744 1.781 sum 8.006 -19.534 3.656 21.425 Atomic orbital electron populations 1.70906 1.07934 1.29766 1.48584 1.27488 0.96587 1.06826 0.92546 0.82929 0.74140 0.70925 0.78056 1.20618 1.19233 1.19461 1.22430 0.94527 0.93470 1.55494 0.93387 1.19058 0.94779 0.93365 0.94037 1.21859 0.95204 0.88791 0.98406 1.62023 1.26973 1.01936 1.35594 1.22069 0.96407 0.98962 0.89909 1.21571 0.97686 0.93442 1.02051 1.21567 0.98061 0.97357 0.98207 1.21934 0.98449 0.96721 0.97240 1.21330 0.91990 0.90718 0.95568 0.96245 1.21984 0.96050 0.97438 0.95565 0.92537 1.22379 0.98538 1.00027 0.93977 1.22441 0.98633 0.97725 0.97145 1.23027 1.01294 0.98477 0.95041 1.22353 0.96921 0.88893 0.86629 0.92121 1.86630 1.63065 1.39311 1.48209 0.93680 0.99334 0.99446 0.97857 0.91364 0.93231 0.96446 0.91985 0.90603 0.90099 0.92798 0.92223 0.87339 0.94219 0.90603 0.91605 0.90303 0.89592 0.89859 0.76190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.36 13.65 21.45 0.29 -60.07 16 2 C -0.04 -2.24 5.46 84.65 0.46 -1.78 16 3 Si 1.12 51.89 29.90 68.60 2.05 53.94 16 4 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.62 -37.47 9.11 25.60 0.23 -37.24 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.02 1.41 4.19 29.85 0.12 1.53 16 10 C 0.08 3.96 4.61 86.30 0.40 4.36 16 11 N -0.54 -21.27 4.29 -871.12 -3.74 -25.00 16 12 C 0.05 2.07 5.28 86.32 0.46 2.53 16 13 C -0.11 -3.22 6.09 30.65 0.19 -3.04 16 14 C -0.11 -2.85 6.00 30.68 0.18 -2.67 16 15 C -0.11 -2.79 4.67 30.65 0.14 -2.65 16 16 C 0.11 3.58 1.19 44.94 0.05 3.64 16 17 H 0.02 0.70 7.71 -2.38 -0.02 0.68 16 18 C -0.09 -2.65 2.38 -10.07 -0.02 -2.68 16 19 H 0.06 1.91 5.88 -2.39 -0.01 1.90 16 20 C -0.11 -3.11 5.97 31.67 0.19 -2.92 16 21 C -0.12 -2.43 6.91 31.89 0.22 -2.21 16 22 C -0.14 -2.23 6.56 31.71 0.21 -2.02 16 23 C 0.11 2.28 4.03 31.36 0.13 2.40 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 O -0.56 -10.46 8.96 -148.98 -1.33 -11.79 16 26 H 0.25 16.76 7.22 -92.71 -0.67 16.09 16 27 H -0.01 -0.71 8.01 -2.39 -0.02 -0.73 16 28 H -0.01 -0.75 6.26 -2.39 -0.01 -0.77 16 29 H 0.00 0.16 8.13 -2.39 -0.02 0.14 16 30 H 0.07 3.13 5.61 -2.39 -0.01 3.12 16 31 H 0.05 2.15 6.17 -2.39 -0.01 2.13 16 32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 1.62 5.78 -2.38 -0.01 1.61 16 38 H 0.11 2.49 5.37 -2.39 -0.01 2.48 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 2.14 5.34 -2.38 -0.01 2.13 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 45 H 0.39 3.51 9.11 -74.05 -0.67 2.83 16 Total: -1.00 -70.99 328.41 0.62 -70.37 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.39 Total: 15.29 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 2.96 Total: -42.74 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.44 Total: -85.08 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.33 Total: -11.79 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Total: -70.99 0.62 -70.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253088921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.649 kcal (2) G-P(sol) polarization free energy of solvation -70.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds