Wall clock time and date at job start Mon Mar 30 2020 06:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47233 * 240.00089 * 3 2 1 5 5 H 1.48500 * 109.47391 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46870 * 120.00221 * 3 2 1 7 7 C 1.37877 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47385 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47194 * 173.83081 * 10 9 7 12 12 C 1.47894 * 111.00123 * 281.39046 * 11 10 9 13 13 C 1.54005 * 107.05819 * 145.84374 * 12 11 10 14 14 C 1.54599 * 105.22215 * 358.72770 * 13 12 11 15 15 C 1.48539 * 110.99647 * 38.78923 * 11 10 9 16 16 H 1.08996 * 110.66622 * 318.87743 * 15 11 10 17 17 C 1.53002 * 110.66484 * 81.84264 * 15 11 10 18 18 H 1.09000 * 109.47274 * 66.81133 * 17 15 11 19 19 C 1.53000 * 109.47248 * 306.80784 * 17 15 11 20 20 C 1.52995 * 109.47117 * 180.02562 * 19 17 15 21 21 C 1.53001 * 109.47320 * 60.00225 * 20 19 17 22 22 C 1.53006 * 109.46960 * 300.00249 * 21 20 19 23 23 C 1.52995 * 109.47308 * 59.99743 * 22 21 20 24 24 H 1.09000 * 109.47125 * 60.00084 * 23 22 21 25 25 O 1.42897 * 109.47178 * 180.02562 * 23 22 21 26 26 H 0.97002 * 119.99391 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47065 * 59.99922 * 9 7 2 28 28 H 1.08998 * 109.46830 * 300.00186 * 9 7 2 29 29 H 1.09009 * 109.47031 * 53.83749 * 10 9 7 30 30 H 1.08997 * 109.47352 * 293.83346 * 10 9 7 31 31 H 1.08996 * 109.91991 * 26.49352 * 12 11 10 32 32 H 1.08997 * 109.91721 * 265.19251 * 12 11 10 33 33 H 1.08994 * 110.30636 * 117.68579 * 13 12 11 34 34 H 1.09001 * 110.30574 * 239.76309 * 13 12 11 35 35 H 1.08994 * 110.72587 * 96.45342 * 14 13 12 36 36 H 1.09006 * 110.71826 * 219.73447 * 14 13 12 37 37 H 1.09000 * 109.47269 * 300.00352 * 19 17 15 38 38 H 1.09001 * 109.47017 * 60.00144 * 19 17 15 39 39 H 1.09003 * 109.47534 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.47125 * 300.00178 * 20 19 17 41 41 H 1.09006 * 109.47218 * 59.99498 * 21 20 19 42 42 H 1.08995 * 109.47474 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47136 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.46959 * 299.99725 * 22 21 20 45 45 H 0.96698 * 113.99918 * 299.99588 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 7 1.5166 -4.9292 0.1450 12 6 1.1286 -5.1564 1.5539 13 6 -0.2282 -5.8847 1.5370 14 6 -0.5954 -6.0242 0.0417 15 6 0.2473 -4.9064 -0.6261 16 1 -0.2459 -3.9395 -0.5265 17 6 0.5044 -5.2303 -2.0991 18 1 0.8347 -6.2650 -2.1914 19 6 1.5882 -4.2983 -2.6447 20 6 1.8448 -4.6219 -4.1179 21 6 0.5541 -4.4251 -4.9156 22 6 -0.5298 -5.3571 -4.3700 23 6 -0.7864 -5.0336 -2.8969 24 1 -1.1166 -3.9989 -2.8043 25 8 -1.7982 -5.9044 -2.3872 26 1 -0.4849 0.8401 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5574 0.8880 29 1 2.9422 -3.5450 0.8271 30 1 2.7969 -3.6677 -0.9427 31 1 1.0312 -4.2018 2.0708 32 1 1.8762 -5.7756 2.0497 33 1 -0.1353 -6.8684 1.9970 34 1 -0.9814 -5.2935 2.0580 35 1 -0.3052 -7.0042 -0.3369 36 1 -1.6605 -5.8502 -0.1116 37 1 1.2578 -3.2637 -2.5525 38 1 2.5075 -4.4382 -2.0761 39 1 2.6166 -3.9576 -4.5067 40 1 2.1750 -5.6565 -4.2105 41 1 0.2238 -3.3904 -4.8230 42 1 0.7368 -4.6560 -5.9651 43 1 -1.4491 -5.2173 -4.9386 44 1 -0.1996 -6.3917 -4.4626 45 1 -2.6461 -5.8336 -2.8467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253104282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:34 Heat of formation + Delta-G solvation = -61.536300 kcal Electronic energy + Delta-G solvation = -22461.683535 eV Core-core repulsion = 19478.144535 eV Total energy + Delta-G solvation = -2983.538999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.81425 -37.62246 -35.30146 -33.55385 -31.83456 -31.35905 -29.33019 -28.20517 -26.79824 -24.37860 -22.60173 -22.15701 -21.31909 -20.19523 -19.49003 -18.61946 -17.01767 -16.59768 -15.55422 -15.08100 -14.46210 -14.45446 -14.22982 -13.89840 -13.61287 -13.23283 -12.95886 -12.74177 -12.28488 -12.20608 -11.84553 -11.64646 -11.48760 -11.29085 -10.99054 -10.87480 -10.83633 -10.67986 -10.63295 -10.43643 -10.30637 -10.22654 -9.86230 -9.80124 -9.77932 -9.47258 -9.10288 -9.00017 -8.32457 -7.42747 -6.01997 -4.04428 3.31093 3.35709 3.38240 4.40817 4.44038 4.65897 4.91829 5.04701 5.19483 5.27526 5.33248 5.34004 5.51220 5.53150 5.56810 5.67665 5.78149 5.82281 5.83992 6.02891 6.06800 6.15284 6.17431 6.27112 6.30769 6.34833 6.37320 6.40399 6.48145 6.49764 6.60888 6.64687 6.66395 6.81525 6.87026 6.99982 7.07240 7.54602 7.62193 7.78402 7.86467 7.88153 8.02749 8.43250 9.02352 9.59555 11.08719 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.007119 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.458887 B = 3932.047585 C = 4853.129414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C -0.004 4.004 10 C 0.031 3.969 11 N -0.519 5.519 12 C 0.036 3.964 13 C -0.134 4.134 14 C -0.101 4.101 15 C 0.063 3.937 16 H 0.077 0.923 17 C -0.050 4.050 18 H 0.071 0.929 19 C -0.130 4.130 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.146 4.146 23 C 0.108 3.892 24 H 0.056 0.944 25 O -0.561 6.561 26 H 0.260 0.740 27 H 0.027 0.973 28 H 0.012 0.988 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.922 -11.565 -6.212 13.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.042 4.042 10 C -0.096 4.096 11 N -0.242 5.242 12 C -0.092 4.092 13 C -0.172 4.172 14 C -0.139 4.139 15 C -0.045 4.045 16 H 0.095 0.905 17 C -0.069 4.069 18 H 0.089 0.911 19 C -0.166 4.166 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.184 4.184 23 C 0.049 3.951 24 H 0.074 0.926 25 O -0.365 6.365 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.212 -12.025 -5.974 13.481 hybrid contribution -0.536 1.942 -0.066 2.016 sum -1.748 -10.082 -6.039 11.882 Atomic orbital electron populations 1.69954 1.06009 1.26618 1.50776 1.24999 0.94808 0.99137 0.95313 0.86699 0.79630 0.83288 0.78638 1.20228 1.21347 1.20290 1.21153 0.92944 0.90996 1.50651 0.92780 1.19659 0.94852 0.92401 0.97245 1.22825 0.97641 0.87826 1.01339 1.64933 1.19158 1.33952 1.06176 1.22749 0.95717 0.99311 0.91449 1.22432 0.97046 0.99848 0.97884 1.22415 0.99754 0.98558 0.93199 1.22903 0.90304 0.98884 0.92407 0.90548 1.20882 0.92578 1.00075 0.93415 0.91101 1.22106 0.99781 1.00372 0.94377 1.21592 0.96853 1.01039 0.96297 1.21498 0.95504 0.99833 0.98744 1.22218 0.99026 1.00433 0.96701 1.21892 0.88726 0.92932 0.91577 0.92575 1.86605 1.23317 1.65011 1.61613 0.93025 0.95500 0.96979 0.92782 0.90286 0.93331 0.91648 0.92158 0.92182 0.91899 0.90928 0.90443 0.89106 0.92092 0.92518 0.91716 0.92418 0.92372 0.91576 0.78693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.00 -0.10 3.36 -27.89 -0.09 -0.19 16 10 C 0.03 0.64 4.46 -3.82 -0.02 0.63 16 11 N -0.52 -9.76 5.03 -222.52 -1.12 -10.88 16 12 C 0.04 0.64 6.39 -2.75 -0.02 0.62 16 13 C -0.13 -2.12 6.92 -25.37 -0.18 -2.30 16 14 C -0.10 -1.65 5.20 -24.78 -0.13 -1.78 16 15 C 0.06 1.15 1.62 -65.69 -0.11 1.04 16 16 H 0.08 1.66 5.28 -51.93 -0.27 1.39 16 17 C -0.05 -0.82 1.84 -90.62 -0.17 -0.98 16 18 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 19 C -0.13 -2.13 3.62 -26.73 -0.10 -2.23 16 20 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 21 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 22 C -0.15 -1.77 5.54 -26.73 -0.15 -1.91 16 23 C 0.11 1.55 2.90 -26.73 -0.08 1.48 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 O -0.56 -7.49 10.67 -35.23 -0.38 -7.86 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.71 4.79 -51.93 -0.25 0.46 16 28 H 0.01 0.33 7.00 -51.93 -0.36 -0.03 16 29 H 0.05 1.16 7.96 -51.92 -0.41 0.74 16 30 H 0.08 1.61 4.78 -51.93 -0.25 1.36 16 31 H 0.05 0.96 6.76 -51.93 -0.35 0.61 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.01 7.92 -51.93 -0.41 0.60 16 36 H 0.07 1.18 7.04 -51.93 -0.37 0.81 16 37 H 0.08 1.50 6.39 -51.93 -0.33 1.17 16 38 H 0.09 1.58 4.93 -51.93 -0.26 1.33 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.37 3.39 9.08 45.56 0.41 3.81 16 LS Contribution 325.46 15.07 4.90 4.90 Total: -1.00 -29.55 325.46 -9.66 -39.21 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.03 Total: 6.07 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -1.76 Total: -22.23 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.38 Total: -36.63 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: -0.38 Total: -7.86 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.55 -9.66 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253104282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.329 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds