Wall clock time and date at job start Mon Mar 30 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00171 * 2 1 4 4 H 1.48500 * 109.47233 * 240.00089 * 3 2 1 5 5 H 1.48500 * 109.47391 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46870 * 120.00221 * 3 2 1 7 7 C 1.37877 * 119.99704 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99834 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47385 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47194 * 173.83081 * 10 9 7 12 12 C 1.47894 * 111.00123 * 281.39046 * 11 10 9 13 13 C 1.54005 * 107.05819 * 145.84374 * 12 11 10 14 14 C 1.54599 * 105.22215 * 358.72770 * 13 12 11 15 15 C 1.48539 * 110.99647 * 38.78923 * 11 10 9 16 16 H 1.08996 * 110.66622 * 318.87743 * 15 11 10 17 17 C 1.53002 * 110.66484 * 81.84264 * 15 11 10 18 18 H 1.09000 * 109.47274 * 66.81133 * 17 15 11 19 19 C 1.53000 * 109.47248 * 306.80784 * 17 15 11 20 20 C 1.52995 * 109.47117 * 180.02562 * 19 17 15 21 21 C 1.53001 * 109.47320 * 60.00225 * 20 19 17 22 22 C 1.53006 * 109.46960 * 300.00249 * 21 20 19 23 23 C 1.52995 * 109.47308 * 59.99743 * 22 21 20 24 24 H 1.09000 * 109.47125 * 60.00084 * 23 22 21 25 25 O 1.42897 * 109.47178 * 180.02562 * 23 22 21 26 26 H 0.97002 * 119.99391 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47065 * 59.99922 * 9 7 2 28 28 H 1.08998 * 109.46830 * 300.00186 * 9 7 2 29 29 H 1.09009 * 109.47031 * 53.83749 * 10 9 7 30 30 H 1.08997 * 109.47352 * 293.83346 * 10 9 7 31 31 H 1.08996 * 109.91991 * 26.49352 * 12 11 10 32 32 H 1.08997 * 109.91721 * 265.19251 * 12 11 10 33 33 H 1.08994 * 110.30636 * 117.68579 * 13 12 11 34 34 H 1.09001 * 110.30574 * 239.76309 * 13 12 11 35 35 H 1.08994 * 110.72587 * 96.45342 * 14 13 12 36 36 H 1.09006 * 110.71826 * 219.73447 * 14 13 12 37 37 H 1.09000 * 109.47269 * 300.00352 * 19 17 15 38 38 H 1.09001 * 109.47017 * 60.00144 * 19 17 15 39 39 H 1.09003 * 109.47534 * 179.97438 * 20 19 17 40 40 H 1.09000 * 109.47125 * 300.00178 * 20 19 17 41 41 H 1.09006 * 109.47218 * 59.99498 * 21 20 19 42 42 H 1.08995 * 109.47474 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.47136 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.46959 * 299.99725 * 22 21 20 45 45 H 0.96698 * 113.99918 * 299.99588 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 7 1.5166 -4.9292 0.1450 12 6 1.1286 -5.1564 1.5539 13 6 -0.2282 -5.8847 1.5370 14 6 -0.5954 -6.0242 0.0417 15 6 0.2473 -4.9064 -0.6261 16 1 -0.2459 -3.9395 -0.5265 17 6 0.5044 -5.2303 -2.0991 18 1 0.8347 -6.2650 -2.1914 19 6 1.5882 -4.2983 -2.6447 20 6 1.8448 -4.6219 -4.1179 21 6 0.5541 -4.4251 -4.9156 22 6 -0.5298 -5.3571 -4.3700 23 6 -0.7864 -5.0336 -2.8969 24 1 -1.1166 -3.9989 -2.8043 25 8 -1.7982 -5.9044 -2.3872 26 1 -0.4849 0.8401 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5574 0.8880 29 1 2.9422 -3.5450 0.8271 30 1 2.7969 -3.6677 -0.9427 31 1 1.0312 -4.2018 2.0708 32 1 1.8762 -5.7756 2.0497 33 1 -0.1353 -6.8684 1.9970 34 1 -0.9814 -5.2935 2.0580 35 1 -0.3052 -7.0042 -0.3369 36 1 -1.6605 -5.8502 -0.1116 37 1 1.2578 -3.2637 -2.5525 38 1 2.5075 -4.4382 -2.0761 39 1 2.6166 -3.9576 -4.5067 40 1 2.1750 -5.6565 -4.2105 41 1 0.2238 -3.3904 -4.8230 42 1 0.7368 -4.6560 -5.9651 43 1 -1.4491 -5.2173 -4.9386 44 1 -0.1996 -6.3917 -4.4626 45 1 -2.6461 -5.8336 -2.8467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253104282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:33 Heat of formation + Delta-G solvation = -81.248872 kcal Electronic energy + Delta-G solvation = -22462.538336 eV Core-core repulsion = 19478.144535 eV Total energy + Delta-G solvation = -2984.393801 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19744 -38.92017 -36.42997 -35.51266 -33.62679 -32.65799 -30.48392 -30.08246 -28.13054 -26.27996 -24.19627 -23.39945 -22.77210 -21.57061 -20.70697 -20.20458 -18.68223 -18.10881 -17.07606 -16.65952 -16.34501 -15.77653 -15.38972 -15.34505 -14.83143 -14.63912 -14.42431 -14.32553 -13.76031 -13.67106 -13.47976 -13.20508 -13.01760 -12.73411 -12.60692 -12.50013 -12.33669 -12.11310 -12.00007 -11.89184 -11.71619 -11.68895 -11.49989 -11.43766 -11.08010 -10.96981 -10.76296 -10.55055 -10.36461 -9.10605 -8.21326 -6.32777 1.36336 1.38906 1.46695 2.37762 3.10846 3.16155 3.38875 3.72193 3.85675 3.90109 3.98052 4.16767 4.21984 4.27550 4.35775 4.49016 4.52791 4.53402 4.62691 4.63500 4.69616 4.75842 4.80670 4.93848 4.99809 5.02354 5.04564 5.09463 5.19146 5.24750 5.26889 5.30288 5.35681 5.38400 5.42726 5.43192 5.53356 5.62294 5.70046 5.80382 6.08899 6.18102 6.37311 6.84092 6.98673 7.35953 8.89090 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015670 B = 0.007119 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.458887 B = 3932.047585 C = 4853.129414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.015 3.985 10 C 0.045 3.955 11 N -0.511 5.511 12 C 0.031 3.969 13 C -0.129 4.129 14 C -0.092 4.092 15 C 0.062 3.938 16 H 0.032 0.968 17 C -0.046 4.046 18 H 0.079 0.921 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.118 4.118 22 C -0.137 4.137 23 C 0.113 3.887 24 H 0.026 0.974 25 O -0.568 6.568 26 H 0.262 0.738 27 H 0.009 0.991 28 H -0.025 1.025 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.019 0.981 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -13.012 -7.344 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.580 4.580 8 H 0.076 0.924 9 C -0.023 4.023 10 C -0.082 4.082 11 N -0.233 5.233 12 C -0.098 4.098 13 C -0.167 4.167 14 C -0.130 4.130 15 C -0.046 4.046 16 H 0.050 0.950 17 C -0.065 4.065 18 H 0.097 0.903 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.156 4.156 22 C -0.174 4.174 23 C 0.054 3.946 24 H 0.044 0.956 25 O -0.375 6.375 26 H 0.071 0.929 27 H 0.027 0.973 28 H -0.007 1.007 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.037 0.963 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.601 -13.486 -7.111 15.257 hybrid contribution -0.782 2.382 0.327 2.529 sum -1.383 -11.104 -6.784 13.085 Atomic orbital electron populations 1.70100 1.07719 1.27613 1.51587 1.25912 0.95684 1.03095 0.94722 0.85584 0.78374 0.78423 0.79197 1.19012 1.20887 1.19395 1.21598 0.93413 0.92359 1.50591 0.92366 1.19427 0.94741 0.93574 0.94524 1.22607 0.96665 0.87408 1.01551 1.65017 1.19453 1.31810 1.07071 1.22870 0.97762 0.98553 0.90585 1.22436 0.95492 1.01021 0.97783 1.22355 0.99345 0.98049 0.93234 1.22885 0.89918 0.97558 0.94235 0.95048 1.20849 0.93581 1.00001 0.92097 0.90270 1.21946 0.99134 0.98172 0.96797 1.21568 0.97746 1.02075 0.93981 1.21510 0.94941 0.99051 1.00060 1.22147 0.99912 1.00728 0.94645 1.21692 0.88155 0.91620 0.93154 0.95591 1.86540 1.24290 1.64333 1.62375 0.92935 0.97338 1.00657 0.93235 0.89447 0.96276 0.89487 0.89107 0.92693 0.90663 0.90894 0.94398 0.90314 0.91833 0.90738 0.93481 0.89812 0.90250 0.90421 0.76452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 0.82 3.36 29.85 0.10 0.92 16 10 C 0.05 1.98 4.46 86.30 0.39 2.36 16 11 N -0.51 -19.53 5.03 -857.91 -4.32 -23.84 16 12 C 0.03 1.09 6.39 86.45 0.55 1.64 16 13 C -0.13 -3.98 6.92 31.48 0.22 -3.76 16 14 C -0.09 -2.93 5.20 31.86 0.17 -2.76 16 15 C 0.06 2.33 1.62 45.32 0.07 2.40 16 16 H 0.03 1.47 5.28 -2.39 -0.01 1.46 16 17 C -0.05 -1.50 1.84 -10.79 -0.02 -1.52 16 18 H 0.08 2.46 7.96 -2.39 -0.02 2.44 16 19 C -0.12 -4.15 3.62 30.59 0.11 -4.04 16 20 C -0.12 -3.02 5.92 30.59 0.18 -2.84 16 21 C -0.12 -2.75 5.92 30.60 0.18 -2.57 16 22 C -0.14 -3.00 5.54 30.59 0.17 -2.83 16 23 C 0.11 3.23 2.90 30.59 0.09 3.31 16 24 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 25 O -0.57 -14.40 10.67 -148.98 -1.59 -15.99 16 26 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.01 0.49 4.79 -2.39 -0.01 0.47 16 28 H -0.02 -1.49 7.00 -2.39 -0.02 -1.51 16 29 H 0.05 2.18 7.96 -2.38 -0.02 2.16 16 30 H 0.09 3.68 4.78 -2.39 -0.01 3.67 16 31 H 0.02 0.78 6.76 -2.39 -0.02 0.77 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 2.24 7.92 -2.39 -0.02 2.22 16 36 H 0.07 2.33 7.04 -2.38 -0.02 2.31 16 37 H 0.04 1.56 6.39 -2.39 -0.02 1.55 16 38 H 0.08 2.79 4.93 -2.39 -0.01 2.78 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.39 6.46 9.08 -74.06 -0.67 5.78 16 Total: -1.00 -65.92 325.46 -0.40 -66.32 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.29 Total: 23.50 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 2.90 Total: -39.93 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -4.03 Total: -80.70 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -1.59 Total: -15.99 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.92 -0.40 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253104282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.933 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds