Wall clock time and date at job start Mon Mar 30 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47373 * 299.99716 * 3 2 1 6 6 H 1.48498 * 109.47269 * 60.00284 * 3 2 1 7 7 C 1.37881 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46759 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46882 * 180.02562 * 10 9 7 12 12 C 1.48560 * 111.00158 * 54.58115 * 11 10 9 13 13 C 1.54385 * 104.59589 * 159.04172 * 12 11 10 14 14 C 1.54266 * 105.05726 * 336.14486 * 13 12 11 15 15 C 1.48560 * 110.99996 * 170.00328 * 11 10 9 16 16 H 1.09004 * 110.41192 * 319.73396 * 15 11 10 17 17 C 1.52999 * 110.51293 * 82.12798 * 15 11 10 18 18 H 1.08996 * 109.46982 * 293.79270 * 17 15 11 19 19 C 1.53005 * 109.47069 * 53.79055 * 17 15 11 20 20 C 1.52999 * 109.47069 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.46821 * 299.99990 * 20 19 17 22 22 C 1.52996 * 109.47273 * 60.00277 * 21 20 19 23 23 C 1.52999 * 109.46971 * 299.99631 * 22 21 20 24 24 H 1.08998 * 109.47391 * 300.00193 * 23 22 21 25 25 O 1.42901 * 109.47308 * 179.97438 * 23 22 21 26 26 H 0.96993 * 120.00020 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47386 * 60.00445 * 9 7 2 28 28 H 1.08992 * 109.47610 * 300.00077 * 9 7 2 29 29 H 1.08998 * 109.47037 * 60.00502 * 10 9 7 30 30 H 1.09001 * 109.47401 * 299.99847 * 10 9 7 31 31 H 1.08998 * 110.41047 * 40.26334 * 12 11 10 32 32 H 1.08999 * 110.41250 * 277.82030 * 12 11 10 33 33 H 1.08995 * 110.32088 * 217.25484 * 13 12 11 34 34 H 1.08993 * 110.32674 * 95.04507 * 13 12 11 35 35 H 1.08999 * 110.31900 * 118.89647 * 14 13 12 36 36 H 1.08995 * 110.32246 * 241.00193 * 14 13 12 37 37 H 1.08997 * 109.46753 * 299.99942 * 19 17 15 38 38 H 1.08998 * 109.47104 * 59.99714 * 19 17 15 39 39 H 1.08996 * 109.46818 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.47074 * 59.99445 * 20 19 17 41 41 H 1.08998 * 109.47056 * 300.00105 * 21 20 19 42 42 H 1.09001 * 109.46657 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47193 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47220 * 59.99928 * 22 21 20 45 45 H 0.96709 * 113.99895 * 60.00026 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 7 1.5108 -4.9343 -0.0024 12 6 0.5480 -4.9926 -1.1323 13 6 0.2728 -6.4986 -1.3315 14 6 1.5092 -7.2127 -0.7475 15 6 2.4274 -6.0781 -0.2444 16 1 3.1645 -5.8203 -1.0050 17 6 3.1238 -6.4911 1.0538 18 1 3.7867 -5.6902 1.3811 19 6 2.0731 -6.7570 2.1338 20 6 2.7695 -7.1694 3.4322 21 6 3.5864 -8.4405 3.1913 22 6 4.6370 -8.1746 2.1113 23 6 3.9406 -7.7622 0.8129 24 1 3.2779 -8.5634 0.4858 25 8 4.9218 -7.5133 -0.1956 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8726 -3.6048 0.8877 30 1 2.8713 -3.6040 -0.8923 31 1 0.9910 -4.5649 -2.0317 32 1 -0.3725 -4.4688 -0.8748 33 1 0.1693 -6.7274 -2.3921 34 1 -0.6259 -6.7941 -0.7902 35 1 1.2173 -7.8586 0.0805 36 1 2.0115 -7.7935 -1.5210 37 1 1.4916 -5.8513 2.3057 38 1 1.4102 -7.5578 1.8064 39 1 2.0210 -7.3592 4.2015 40 1 3.4323 -6.3682 3.7593 41 1 2.9237 -9.2416 2.8641 42 1 4.0821 -8.7345 4.1164 43 1 5.2192 -9.0800 1.9400 44 1 5.2997 -7.3734 2.4385 45 1 5.4780 -8.2775 -0.4004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253104284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:37 Heat of formation + Delta-G solvation = -77.084616 kcal Electronic energy + Delta-G solvation = -21739.612756 eV Core-core repulsion = 18755.399531 eV Total energy + Delta-G solvation = -2984.213225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.91532 -37.72819 -35.48399 -33.65270 -31.85465 -31.52903 -29.60965 -28.36598 -26.81002 -24.31180 -22.95877 -22.25876 -21.54934 -20.48425 -19.34201 -18.69580 -17.20567 -16.34370 -15.81929 -15.17189 -14.78340 -14.49480 -14.42854 -13.89170 -13.82426 -13.53976 -13.43852 -12.75445 -12.64230 -12.25965 -11.99296 -11.79650 -11.62555 -11.44650 -11.27969 -10.98034 -10.88472 -10.73111 -10.69874 -10.58579 -10.45607 -10.39192 -10.13814 -9.90879 -9.72195 -9.66618 -9.23002 -9.05350 -8.31012 -7.73273 -5.96215 -3.98000 3.33580 3.40859 3.45491 4.18865 4.41250 4.52416 4.69198 4.79301 4.98416 5.01450 5.10345 5.25396 5.29169 5.31818 5.39961 5.43195 5.51745 5.55996 5.62817 5.72950 5.85532 5.86573 5.95757 6.05581 6.09835 6.13041 6.21077 6.23377 6.28291 6.32060 6.35370 6.50891 6.56731 6.60944 6.68441 6.70622 7.02733 7.55499 7.58373 7.65474 7.80768 7.93298 8.11673 8.48707 9.09388 9.65537 11.15272 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.004739 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.531565 B = 5907.415627 C = 6364.225390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.054 3.946 11 N -0.505 5.505 12 C 0.039 3.961 13 C -0.125 4.125 14 C -0.120 4.120 15 C 0.069 3.931 16 H 0.053 0.947 17 C -0.060 4.060 18 H 0.074 0.926 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.116 4.116 22 C -0.151 4.151 23 C 0.110 3.890 24 H 0.054 0.946 25 O -0.564 6.564 26 H 0.259 0.741 27 H 0.017 0.983 28 H 0.023 0.977 29 H 0.061 0.939 30 H 0.020 0.980 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 -19.771 2.401 20.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.074 4.074 11 N -0.229 5.229 12 C -0.089 4.089 13 C -0.163 4.163 14 C -0.158 4.158 15 C -0.040 4.040 16 H 0.071 0.929 17 C -0.079 4.079 18 H 0.092 0.908 19 C -0.142 4.142 20 C -0.162 4.162 21 C -0.153 4.153 22 C -0.188 4.188 23 C 0.050 3.950 24 H 0.072 0.928 25 O -0.368 6.368 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.822 -19.070 2.938 19.888 hybrid contribution 1.218 0.546 -0.801 1.557 sum 6.040 -18.524 2.137 19.601 Atomic orbital electron populations 1.69980 1.06006 1.26385 1.50994 1.24986 0.94812 0.99131 0.95371 0.86558 0.80144 0.83893 0.77541 1.19776 1.21064 1.21005 1.21246 0.93026 0.91091 1.50433 0.92788 1.19136 0.93986 0.90392 0.97682 1.22455 0.97007 0.88910 0.98992 1.65396 1.13884 1.02989 1.40611 1.22989 0.97898 0.94972 0.93050 1.22317 0.98152 0.95860 0.99996 1.22396 0.95939 0.97579 0.99897 1.22543 0.94008 0.91872 0.95529 0.92904 1.20947 0.95874 0.95713 0.95368 0.90766 1.21495 0.97123 1.02788 0.92767 1.21630 0.99159 0.97168 0.98279 1.21484 0.97457 0.98323 0.98077 1.22263 0.98720 1.01366 0.96493 1.21913 0.89074 0.97549 0.86417 0.92837 1.86602 1.50357 1.41000 1.58869 0.93119 0.96481 0.95838 0.92089 0.96221 0.94183 0.89882 0.92154 0.91523 0.91228 0.92298 0.89301 0.92168 0.91999 0.91940 0.92144 0.92174 0.92245 0.91199 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.68 4.69 -27.88 -0.13 0.54 16 10 C 0.05 1.19 4.87 -3.82 -0.02 1.17 16 11 N -0.50 -9.43 4.22 -222.13 -0.94 -10.37 16 12 C 0.04 0.70 5.11 -2.18 -0.01 0.68 16 13 C -0.13 -1.75 7.00 -25.34 -0.18 -1.93 16 14 C -0.12 -1.60 5.28 -25.34 -0.13 -1.73 16 15 C 0.07 1.10 1.91 -66.07 -0.13 0.97 16 16 H 0.05 0.95 7.52 -51.93 -0.39 0.56 16 17 C -0.06 -0.85 1.87 -90.62 -0.17 -1.02 16 18 H 0.07 1.21 7.88 -51.93 -0.41 0.80 16 19 C -0.10 -1.36 4.77 -26.73 -0.13 -1.49 16 20 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 21 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 22 C -0.15 -1.47 5.54 -26.73 -0.15 -1.62 16 23 C 0.11 1.25 2.65 -26.73 -0.07 1.18 16 24 H 0.05 0.57 7.01 -51.93 -0.36 0.21 16 25 O -0.56 -6.77 12.74 -35.23 -0.45 -7.22 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.02 0.47 6.84 -51.93 -0.36 0.12 16 28 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.36 7.88 -51.93 -0.41 0.95 16 30 H 0.02 0.45 7.88 -51.93 -0.41 0.04 16 31 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 32 H 0.08 1.59 7.67 -51.93 -0.40 1.19 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.85 5.55 -51.93 -0.29 0.56 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.39 7.50 -51.93 -0.39 1.00 16 38 H 0.06 0.74 6.19 -51.93 -0.32 0.41 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.37 2.74 9.08 45.56 0.41 3.15 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -31.22 337.65 -9.93 -41.14 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -7.50 Total: 0.64 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.84 Total: -19.79 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: -0.20 Total: -36.91 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.45 Total: -7.22 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.22 -9.93 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253104284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.941 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds