Wall clock time and date at job start Mon Mar 30 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47373 * 299.99716 * 3 2 1 6 6 H 1.48498 * 109.47269 * 60.00284 * 3 2 1 7 7 C 1.37881 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99837 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46759 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46882 * 180.02562 * 10 9 7 12 12 C 1.48560 * 111.00158 * 54.58115 * 11 10 9 13 13 C 1.54385 * 104.59589 * 159.04172 * 12 11 10 14 14 C 1.54266 * 105.05726 * 336.14486 * 13 12 11 15 15 C 1.48560 * 110.99996 * 170.00328 * 11 10 9 16 16 H 1.09004 * 110.41192 * 319.73396 * 15 11 10 17 17 C 1.52999 * 110.51293 * 82.12798 * 15 11 10 18 18 H 1.08996 * 109.46982 * 293.79270 * 17 15 11 19 19 C 1.53005 * 109.47069 * 53.79055 * 17 15 11 20 20 C 1.52999 * 109.47069 * 180.02562 * 19 17 15 21 21 C 1.53005 * 109.46821 * 299.99990 * 20 19 17 22 22 C 1.52996 * 109.47273 * 60.00277 * 21 20 19 23 23 C 1.52999 * 109.46971 * 299.99631 * 22 21 20 24 24 H 1.08998 * 109.47391 * 300.00193 * 23 22 21 25 25 O 1.42901 * 109.47308 * 179.97438 * 23 22 21 26 26 H 0.96993 * 120.00020 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47386 * 60.00445 * 9 7 2 28 28 H 1.08992 * 109.47610 * 300.00077 * 9 7 2 29 29 H 1.08998 * 109.47037 * 60.00502 * 10 9 7 30 30 H 1.09001 * 109.47401 * 299.99847 * 10 9 7 31 31 H 1.08998 * 110.41047 * 40.26334 * 12 11 10 32 32 H 1.08999 * 110.41250 * 277.82030 * 12 11 10 33 33 H 1.08995 * 110.32088 * 217.25484 * 13 12 11 34 34 H 1.08993 * 110.32674 * 95.04507 * 13 12 11 35 35 H 1.08999 * 110.31900 * 118.89647 * 14 13 12 36 36 H 1.08995 * 110.32246 * 241.00193 * 14 13 12 37 37 H 1.08997 * 109.46753 * 299.99942 * 19 17 15 38 38 H 1.08998 * 109.47104 * 59.99714 * 19 17 15 39 39 H 1.08996 * 109.46818 * 180.02562 * 20 19 17 40 40 H 1.08998 * 109.47074 * 59.99445 * 20 19 17 41 41 H 1.08998 * 109.47056 * 300.00105 * 21 20 19 42 42 H 1.09001 * 109.46657 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47193 * 179.97438 * 22 21 20 44 44 H 1.08998 * 109.47220 * 59.99928 * 22 21 20 45 45 H 0.96709 * 113.99895 * 60.00026 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 7 1.5108 -4.9343 -0.0024 12 6 0.5480 -4.9926 -1.1323 13 6 0.2728 -6.4986 -1.3315 14 6 1.5092 -7.2127 -0.7475 15 6 2.4274 -6.0781 -0.2444 16 1 3.1645 -5.8203 -1.0050 17 6 3.1238 -6.4911 1.0538 18 1 3.7867 -5.6902 1.3811 19 6 2.0731 -6.7570 2.1338 20 6 2.7695 -7.1694 3.4322 21 6 3.5864 -8.4405 3.1913 22 6 4.6370 -8.1746 2.1113 23 6 3.9406 -7.7622 0.8129 24 1 3.2779 -8.5634 0.4858 25 8 4.9218 -7.5133 -0.1956 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8726 -3.6048 0.8877 30 1 2.8713 -3.6040 -0.8923 31 1 0.9910 -4.5649 -2.0317 32 1 -0.3725 -4.4688 -0.8748 33 1 0.1693 -6.7274 -2.3921 34 1 -0.6259 -6.7941 -0.7902 35 1 1.2173 -7.8586 0.0805 36 1 2.0115 -7.7935 -1.5210 37 1 1.4916 -5.8513 2.3057 38 1 1.4102 -7.5578 1.8064 39 1 2.0210 -7.3592 4.2015 40 1 3.4323 -6.3682 3.7593 41 1 2.9237 -9.2416 2.8641 42 1 4.0821 -8.7345 4.1164 43 1 5.2192 -9.0800 1.9400 44 1 5.2997 -7.3734 2.4385 45 1 5.4780 -8.2775 -0.4004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253104284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:36 Heat of formation + Delta-G solvation = -97.984223 kcal Electronic energy + Delta-G solvation = -21740.519031 eV Core-core repulsion = 18755.399531 eV Total energy + Delta-G solvation = -2985.119500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.07122 -38.92840 -36.39373 -35.66147 -33.68220 -32.64182 -30.51889 -30.25557 -27.98007 -26.31187 -24.10780 -23.23799 -23.18030 -21.50600 -20.96353 -19.85048 -18.53223 -18.08958 -17.03036 -16.61427 -16.48595 -15.89783 -15.44217 -15.35077 -15.08161 -14.70857 -14.56505 -14.32130 -13.81372 -13.67567 -13.43502 -13.35323 -13.01028 -12.81279 -12.62900 -12.46213 -12.38750 -12.25375 -12.11113 -11.89279 -11.64579 -11.55432 -11.46871 -11.33917 -11.22703 -11.09402 -10.81979 -10.58574 -10.56390 -9.32403 -8.23403 -6.35067 1.36930 1.37631 1.51202 2.37735 3.09527 3.10423 3.36002 3.66764 3.76041 3.93149 3.97301 4.10467 4.17223 4.25907 4.37070 4.43434 4.45352 4.49764 4.55641 4.59111 4.64328 4.66969 4.71691 4.90375 4.93823 5.00583 5.01830 5.07776 5.12400 5.20910 5.23976 5.29765 5.30551 5.35634 5.39332 5.42914 5.57892 5.60458 5.63820 5.76123 6.01883 6.17432 6.30317 6.80823 7.00317 7.33968 8.88909 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021541 B = 0.004739 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.531565 B = 5907.415627 C = 6364.225390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.054 0.946 9 C 0.038 3.962 10 C 0.074 3.926 11 N -0.509 5.509 12 C 0.033 3.967 13 C -0.115 4.115 14 C -0.110 4.110 15 C 0.068 3.932 16 H 0.030 0.970 17 C -0.060 4.060 18 H 0.040 0.960 19 C -0.099 4.099 20 C -0.124 4.124 21 C -0.111 4.111 22 C -0.147 4.147 23 C 0.115 3.885 24 H 0.074 0.926 25 O -0.587 6.587 26 H 0.265 0.735 27 H -0.004 1.004 28 H -0.007 1.007 29 H 0.054 0.946 30 H 0.009 0.991 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.387 -21.946 2.515 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.054 4.054 11 N -0.233 5.233 12 C -0.095 4.095 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.040 4.040 16 H 0.048 0.952 17 C -0.079 4.079 18 H 0.059 0.941 19 C -0.136 4.136 20 C -0.162 4.162 21 C -0.148 4.148 22 C -0.184 4.184 23 C 0.056 3.944 24 H 0.091 0.909 25 O -0.395 6.395 26 H 0.074 0.926 27 H 0.014 0.986 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.028 0.972 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.071 0.929 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 5.708 -21.275 3.050 22.238 hybrid contribution 0.923 1.240 -0.852 1.765 sum 6.632 -20.035 2.198 21.218 Atomic orbital electron populations 1.70106 1.07741 1.27791 1.51313 1.25942 0.95778 1.03230 0.94440 0.85380 0.78895 0.78625 0.78029 1.18904 1.20053 1.20009 1.21621 0.93301 0.92463 1.51166 0.92756 1.18923 0.94028 0.91912 0.95077 1.22042 0.95698 0.89589 0.98090 1.65367 1.14410 1.02249 1.41243 1.23013 0.96518 0.98141 0.91862 1.22292 0.99094 0.92225 1.01703 1.22386 0.94773 0.96595 1.01027 1.22625 0.93651 0.91558 0.96167 0.95188 1.20939 0.95915 0.96477 0.94593 0.94146 1.21401 0.96827 1.01718 0.93658 1.21615 0.99340 0.97921 0.97276 1.21469 0.97311 0.97369 0.98671 1.22233 0.98704 1.01916 0.95578 1.21838 0.89222 0.95931 0.87383 0.90860 1.86557 1.50946 1.42890 1.59081 0.92641 0.98562 0.98850 0.92765 0.97229 0.95867 0.92124 0.90113 0.90159 0.89272 0.90266 0.92777 0.90524 0.90962 0.93534 0.90467 0.90715 0.89515 0.92943 0.75941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 4 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.55 -32.99 9.11 25.60 0.23 -32.75 16 8 H 0.05 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.04 2.15 4.69 29.85 0.14 2.29 16 10 C 0.07 3.50 4.87 86.31 0.42 3.92 16 11 N -0.51 -19.91 4.22 -856.69 -3.61 -23.53 16 12 C 0.03 1.22 5.11 86.45 0.44 1.66 16 13 C -0.12 -3.03 7.00 31.49 0.22 -2.81 16 14 C -0.11 -2.66 5.28 31.49 0.17 -2.50 16 15 C 0.07 2.17 1.91 45.06 0.09 2.26 16 16 H 0.03 1.10 7.52 -2.39 -0.02 1.08 16 17 C -0.06 -1.69 1.87 -10.79 -0.02 -1.71 16 18 H 0.04 1.38 7.88 -2.39 -0.02 1.37 16 19 C -0.10 -2.52 4.77 30.60 0.15 -2.37 16 20 C -0.12 -2.59 5.92 30.60 0.18 -2.41 16 21 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 22 C -0.15 -2.47 5.54 30.59 0.17 -2.30 16 23 C 0.12 2.37 2.65 30.59 0.08 2.45 16 24 H 0.07 1.25 7.01 -2.39 -0.02 1.24 16 25 O -0.59 -13.08 12.74 -148.98 -1.90 -14.98 16 26 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.00 -0.24 6.84 -2.39 -0.02 -0.25 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.05 2.59 7.88 -2.39 -0.02 2.57 16 30 H 0.01 0.46 7.88 -2.39 -0.02 0.44 16 31 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 32 H 0.06 2.47 7.67 -2.39 -0.02 2.46 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 1.84 5.55 -2.39 -0.01 1.83 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.75 7.50 -2.39 -0.02 1.73 16 38 H 0.08 1.69 6.19 -2.39 -0.01 1.67 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.39 4.75 9.08 -74.05 -0.67 4.08 16 Total: -1.00 -70.50 337.65 -0.02 -70.52 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.27 Total: 13.13 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 2.91 Total: -35.10 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.33 Total: -81.44 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.90 Total: -14.98 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -70.50 -0.02 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253104284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.463 kcal (2) G-P(sol) polarization free energy of solvation -70.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds