Wall clock time and date at job start Mon Mar 30 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99761 * 2 1 4 4 H 1.48502 * 109.47182 * 269.99866 * 3 2 1 5 5 H 1.48503 * 109.47258 * 29.99553 * 3 2 1 6 6 H 1.48497 * 109.47304 * 150.00020 * 3 2 1 7 7 C 1.37873 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47294 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47282 * 180.02562 * 10 9 7 12 12 C 1.47446 * 111.00215 * 69.15791 * 11 10 9 13 13 C 1.54315 * 107.23756 * 123.25683 * 12 11 10 14 14 C 1.55145 * 103.01709 * 22.28556 * 13 12 11 15 15 C 1.47849 * 111.00239 * 189.99967 * 11 10 9 16 16 H 1.09002 * 110.36928 * 332.57641 * 15 11 10 17 17 C 1.52996 * 110.37406 * 94.80331 * 15 11 10 18 18 H 1.08996 * 109.47094 * 54.90829 * 17 15 11 19 19 C 1.52998 * 109.47109 * 174.90784 * 17 15 11 20 20 C 1.52996 * 109.47327 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.46912 * 300.00017 * 20 19 17 22 22 C 1.52998 * 109.47139 * 59.99868 * 21 20 19 23 23 C 1.52995 * 109.47413 * 294.90856 * 17 15 11 24 24 H 1.09007 * 109.47321 * 59.99702 * 23 17 15 25 25 O 1.42901 * 109.47172 * 300.00071 * 23 17 15 26 26 H 0.96999 * 120.00081 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47534 * 59.99871 * 9 7 2 28 28 H 1.09003 * 109.47517 * 299.99721 * 9 7 2 29 29 H 1.08995 * 109.47402 * 59.99784 * 10 9 7 30 30 H 1.09003 * 109.46783 * 299.99740 * 10 9 7 31 31 H 1.08997 * 109.88509 * 242.66415 * 12 11 10 32 32 H 1.08998 * 109.88845 * 3.68497 * 12 11 10 33 33 H 1.09001 * 110.70721 * 140.66576 * 13 12 11 34 34 H 1.08997 * 110.70454 * 263.73034 * 13 12 11 35 35 H 1.09004 * 110.98882 * 206.26022 * 14 13 12 36 36 H 1.08988 * 110.99448 * 82.43746 * 14 13 12 37 37 H 1.09004 * 109.47372 * 60.00082 * 19 17 15 38 38 H 1.09002 * 109.47456 * 300.00239 * 19 17 15 39 39 H 1.09001 * 109.47434 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.47248 * 59.99817 * 20 19 17 41 41 H 1.09002 * 109.47002 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.46892 * 299.99692 * 21 20 19 43 43 H 1.08996 * 109.47106 * 60.00148 * 22 21 20 44 44 H 1.09003 * 109.47013 * 180.02562 * 22 21 20 45 45 H 0.96704 * 114.00296 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 7 1.5110 -4.9342 0.0012 12 6 0.8241 -5.1472 -1.2860 13 6 1.3208 -6.4941 -1.8520 14 6 1.8297 -7.2376 -0.5889 15 6 2.4230 -6.0726 0.2421 16 1 3.4289 -5.8324 -0.1024 17 6 2.4424 -6.4344 1.7285 18 1 1.4245 -6.6226 2.0699 19 6 3.2906 -7.6906 1.9367 20 6 3.3094 -8.0528 3.4230 21 6 3.9090 -6.8943 4.2227 22 6 3.0607 -5.6381 4.0145 23 6 3.0422 -5.2758 2.5277 24 1 2.4379 -4.3808 2.3794 25 8 4.3767 -5.0290 2.0802 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8714 -3.6039 0.8922 30 1 2.8728 -3.6046 -0.8878 31 1 -0.2538 -5.1858 -1.1290 32 1 1.0695 -4.3394 -1.9754 33 1 0.5017 -7.0420 -2.3178 34 1 2.1317 -6.3377 -2.5632 35 1 2.5997 -7.9645 -0.8474 36 1 1.0060 -7.7154 -0.0587 37 1 4.3085 -7.5024 1.5953 38 1 2.8633 -8.5161 1.3674 39 1 3.9141 -8.9475 3.5714 40 1 2.2915 -8.2411 3.7640 41 1 3.9220 -7.1521 5.2817 42 1 4.9270 -6.7059 3.8817 43 1 2.0428 -5.8264 4.3555 44 1 3.4881 -4.8126 4.5838 45 1 4.8196 -4.3052 2.5440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253104286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:39 Heat of formation + Delta-G solvation = -77.130089 kcal Electronic energy + Delta-G solvation = -21997.581627 eV Core-core repulsion = 19013.366431 eV Total energy + Delta-G solvation = -2984.215197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83586 -37.73152 -34.91962 -33.59331 -31.87674 -31.50403 -29.69701 -28.31486 -26.95593 -24.34272 -22.71520 -22.42826 -21.14070 -19.99071 -19.40717 -19.26626 -16.74161 -16.34084 -15.88104 -15.22437 -14.74497 -14.59099 -14.44688 -14.03877 -13.46468 -13.20864 -12.91724 -12.72759 -12.48208 -12.41136 -12.13403 -11.80432 -11.55355 -11.34130 -11.18341 -11.00595 -10.89163 -10.82263 -10.67916 -10.55741 -10.48798 -10.41596 -10.25389 -9.79063 -9.61800 -9.43687 -9.10184 -9.07217 -8.30770 -7.58266 -5.96455 -3.98663 3.33023 3.39307 3.42328 4.35895 4.48929 4.70264 4.75869 4.84544 5.02515 5.04806 5.08935 5.30214 5.38932 5.39591 5.45631 5.55426 5.63291 5.64051 5.74881 5.77351 5.88764 5.97247 6.00387 6.04228 6.07438 6.13954 6.20490 6.29984 6.31977 6.32211 6.38663 6.44215 6.52952 6.61253 6.65164 6.76737 7.09782 7.63488 7.65457 7.86660 7.95781 7.96595 8.15509 8.48995 9.09313 9.64849 11.14889 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.005665 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.591192 B = 4941.803725 C = 6001.228181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.056 3.944 11 N -0.527 5.527 12 C 0.046 3.954 13 C -0.143 4.143 14 C -0.123 4.123 15 C 0.079 3.921 16 H 0.058 0.942 17 C -0.056 4.056 18 H 0.082 0.918 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.114 4.114 22 C -0.152 4.152 23 C 0.104 3.896 24 H 0.076 0.924 25 O -0.563 6.563 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.021 0.979 29 H 0.070 0.930 30 H 0.016 0.984 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -16.069 4.567 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.071 4.071 11 N -0.251 5.251 12 C -0.082 4.082 13 C -0.181 4.181 14 C -0.161 4.161 15 C -0.030 4.030 16 H 0.076 0.924 17 C -0.075 4.075 18 H 0.100 0.900 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.190 4.190 23 C 0.045 3.955 24 H 0.094 0.906 25 O -0.368 6.368 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 5.021 -16.402 4.565 17.750 hybrid contribution 1.086 1.518 -0.264 1.885 sum 6.107 -14.884 4.301 16.653 Atomic orbital electron populations 1.69977 1.06004 1.26454 1.50844 1.24986 0.94790 0.99074 0.95419 0.86634 0.79848 0.83670 0.78061 1.20746 1.21247 1.19925 1.21208 0.92922 0.91131 1.50592 0.92906 1.19076 0.93966 0.90229 0.97581 1.22619 0.96545 0.88612 0.99357 1.63525 1.28254 1.02353 1.30949 1.22742 0.99430 0.95552 0.90439 1.22797 1.00570 0.97232 0.97522 1.22732 1.00128 0.97245 0.96015 1.22481 0.95687 0.90575 0.94213 0.92376 1.21047 0.98730 0.93285 0.94424 0.90016 1.21516 1.00887 0.96810 0.95634 1.21508 1.00600 0.97586 0.95729 1.21431 0.99904 0.94882 0.98890 1.22271 1.00856 0.98071 0.97831 1.21910 0.83774 0.98509 0.91290 0.90645 1.86462 1.28035 1.57277 1.65036 0.93074 0.96771 0.96037 0.91154 0.96590 0.91198 0.92349 0.91434 0.92032 0.91663 0.91063 0.91391 0.92384 0.92527 0.92371 0.92843 0.91575 0.91271 0.92037 0.78148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.76 4.99 -27.88 -0.14 0.63 16 10 C 0.06 1.21 3.99 -3.83 -0.02 1.19 16 11 N -0.53 -9.81 4.63 -223.38 -1.03 -10.84 16 12 C 0.05 0.81 6.20 -2.84 -0.02 0.79 16 13 C -0.14 -1.98 6.94 -24.91 -0.17 -2.15 16 14 C -0.12 -1.62 5.34 -24.59 -0.13 -1.75 16 15 C 0.08 1.23 1.97 -66.19 -0.13 1.10 16 16 H 0.06 1.01 7.31 -51.93 -0.38 0.63 16 17 C -0.06 -0.78 1.78 -90.63 -0.16 -0.94 16 18 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.11 -1.31 4.82 -26.73 -0.13 -1.44 16 20 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 21 C -0.11 -1.22 5.78 -26.73 -0.15 -1.37 16 22 C -0.15 -1.84 5.64 -26.71 -0.15 -1.99 16 23 C 0.10 1.49 2.36 -26.71 -0.06 1.43 16 24 H 0.08 1.32 5.99 -51.93 -0.31 1.01 16 25 O -0.56 -8.03 10.56 -35.23 -0.37 -8.40 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.01 0.40 7.09 -51.93 -0.37 0.03 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.49 4.72 -51.93 -0.24 1.25 16 30 H 0.02 0.36 7.98 -51.93 -0.41 -0.06 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.12 6.87 -51.93 -0.36 0.76 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.76 8.02 -51.93 -0.42 0.35 16 36 H 0.07 0.90 8.06 -51.94 -0.42 0.48 16 37 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 38 H 0.06 0.63 7.16 -51.93 -0.37 0.26 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.37 4.25 9.08 45.56 0.41 4.67 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -30.50 334.77 -9.92 -40.41 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.43 Total: 2.86 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.83 Total: -19.46 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.30 Total: -37.23 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.37 Total: -8.40 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.50 -9.92 -40.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253104286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.718 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds