Wall clock time and date at job start Mon Mar 30 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99761 * 2 1 4 4 H 1.48502 * 109.47182 * 269.99866 * 3 2 1 5 5 H 1.48503 * 109.47258 * 29.99553 * 3 2 1 6 6 H 1.48497 * 109.47304 * 150.00020 * 3 2 1 7 7 C 1.37873 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47294 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47282 * 180.02562 * 10 9 7 12 12 C 1.47446 * 111.00215 * 69.15791 * 11 10 9 13 13 C 1.54315 * 107.23756 * 123.25683 * 12 11 10 14 14 C 1.55145 * 103.01709 * 22.28556 * 13 12 11 15 15 C 1.47849 * 111.00239 * 189.99967 * 11 10 9 16 16 H 1.09002 * 110.36928 * 332.57641 * 15 11 10 17 17 C 1.52996 * 110.37406 * 94.80331 * 15 11 10 18 18 H 1.08996 * 109.47094 * 54.90829 * 17 15 11 19 19 C 1.52998 * 109.47109 * 174.90784 * 17 15 11 20 20 C 1.52996 * 109.47327 * 180.02562 * 19 17 15 21 21 C 1.53004 * 109.46912 * 300.00017 * 20 19 17 22 22 C 1.52998 * 109.47139 * 59.99868 * 21 20 19 23 23 C 1.52995 * 109.47413 * 294.90856 * 17 15 11 24 24 H 1.09007 * 109.47321 * 59.99702 * 23 17 15 25 25 O 1.42901 * 109.47172 * 300.00071 * 23 17 15 26 26 H 0.96999 * 120.00081 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47534 * 59.99871 * 9 7 2 28 28 H 1.09003 * 109.47517 * 299.99721 * 9 7 2 29 29 H 1.08995 * 109.47402 * 59.99784 * 10 9 7 30 30 H 1.09003 * 109.46783 * 299.99740 * 10 9 7 31 31 H 1.08997 * 109.88509 * 242.66415 * 12 11 10 32 32 H 1.08998 * 109.88845 * 3.68497 * 12 11 10 33 33 H 1.09001 * 110.70721 * 140.66576 * 13 12 11 34 34 H 1.08997 * 110.70454 * 263.73034 * 13 12 11 35 35 H 1.09004 * 110.98882 * 206.26022 * 14 13 12 36 36 H 1.08988 * 110.99448 * 82.43746 * 14 13 12 37 37 H 1.09004 * 109.47372 * 60.00082 * 19 17 15 38 38 H 1.09002 * 109.47456 * 300.00239 * 19 17 15 39 39 H 1.09001 * 109.47434 * 180.02562 * 20 19 17 40 40 H 1.08996 * 109.47248 * 59.99817 * 20 19 17 41 41 H 1.09002 * 109.47002 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.46892 * 299.99692 * 21 20 19 43 43 H 1.08996 * 109.47106 * 60.00148 * 22 21 20 44 44 H 1.09003 * 109.47013 * 180.02562 * 22 21 20 45 45 H 0.96704 * 114.00296 * 179.97438 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0018 11 7 1.5110 -4.9342 0.0012 12 6 0.8241 -5.1472 -1.2860 13 6 1.3208 -6.4941 -1.8520 14 6 1.8297 -7.2376 -0.5889 15 6 2.4230 -6.0726 0.2421 16 1 3.4289 -5.8324 -0.1024 17 6 2.4424 -6.4344 1.7285 18 1 1.4245 -6.6226 2.0699 19 6 3.2906 -7.6906 1.9367 20 6 3.3094 -8.0528 3.4230 21 6 3.9090 -6.8943 4.2227 22 6 3.0607 -5.6381 4.0145 23 6 3.0422 -5.2758 2.5277 24 1 2.4379 -4.3808 2.3794 25 8 4.3767 -5.0290 2.0802 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8714 -3.6039 0.8922 30 1 2.8728 -3.6046 -0.8878 31 1 -0.2538 -5.1858 -1.1290 32 1 1.0695 -4.3394 -1.9754 33 1 0.5017 -7.0420 -2.3178 34 1 2.1317 -6.3377 -2.5632 35 1 2.5997 -7.9645 -0.8474 36 1 1.0060 -7.7154 -0.0587 37 1 4.3085 -7.5024 1.5953 38 1 2.8633 -8.5161 1.3674 39 1 3.9141 -8.9475 3.5714 40 1 2.2915 -8.2411 3.7640 41 1 3.9220 -7.1521 5.2817 42 1 4.9270 -6.7059 3.8817 43 1 2.0428 -5.8264 4.3555 44 1 3.4881 -4.8126 4.5838 45 1 4.8196 -4.3052 2.5440 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253104286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:38 Heat of formation + Delta-G solvation = -97.167213 kcal Electronic energy + Delta-G solvation = -21998.450502 eV Core-core repulsion = 19013.366431 eV Total energy + Delta-G solvation = -2985.084072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03785 -38.96775 -36.07413 -35.51377 -33.61172 -32.67767 -30.78515 -30.08926 -28.14380 -26.30817 -23.82741 -23.71736 -22.55988 -21.24626 -20.73237 -20.53490 -18.56195 -17.86451 -17.05405 -16.62913 -16.52263 -15.90262 -15.69270 -15.15172 -14.85064 -14.68555 -14.35217 -14.00289 -13.85195 -13.75672 -13.37146 -13.15367 -13.00541 -12.92962 -12.71366 -12.52368 -12.38091 -12.15316 -11.95674 -11.89064 -11.66468 -11.55264 -11.52972 -11.35413 -11.26943 -11.17428 -10.67027 -10.56594 -10.39412 -9.12157 -8.20986 -6.32792 1.38127 1.39822 1.51014 2.38921 3.10083 3.12054 3.52536 3.65830 3.78429 3.94764 4.01712 4.07209 4.12543 4.32205 4.37594 4.47137 4.52130 4.53769 4.63528 4.67815 4.69984 4.78243 4.80663 4.90627 4.96823 5.00733 5.05928 5.07009 5.10597 5.19140 5.24722 5.33743 5.35056 5.38167 5.39935 5.46761 5.52114 5.66341 5.67889 5.80991 6.12096 6.32944 6.38921 6.84185 6.92611 7.36413 8.91235 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018984 B = 0.005665 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.591192 B = 4941.803725 C = 6001.228181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.041 3.959 10 C 0.078 3.922 11 N -0.537 5.537 12 C 0.040 3.960 13 C -0.133 4.133 14 C -0.113 4.113 15 C 0.078 3.922 16 H 0.041 0.959 17 C -0.055 4.055 18 H 0.077 0.923 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.149 4.149 23 C 0.105 3.895 24 H 0.035 0.965 25 O -0.571 6.571 26 H 0.264 0.736 27 H -0.014 1.014 28 H -0.010 1.010 29 H 0.074 0.926 30 H 0.004 0.996 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 -17.618 5.082 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.004 3.996 10 C -0.050 4.050 11 N -0.261 5.261 12 C -0.088 4.088 13 C -0.171 4.171 14 C -0.151 4.151 15 C -0.030 4.030 16 H 0.059 0.941 17 C -0.074 4.074 18 H 0.095 0.905 19 C -0.140 4.140 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.186 4.186 23 C 0.046 3.954 24 H 0.053 0.947 25 O -0.378 6.378 26 H 0.073 0.927 27 H 0.004 0.996 28 H 0.008 0.992 29 H 0.092 0.908 30 H 0.022 0.978 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.326 -17.967 5.082 19.715 hybrid contribution 0.637 2.018 -0.428 2.159 sum 6.962 -15.950 4.654 18.015 Atomic orbital electron populations 1.70116 1.07849 1.27756 1.51434 1.25954 0.95720 1.03257 0.94561 0.85446 0.78717 0.78364 0.78509 1.19836 1.20534 1.18622 1.21587 0.93320 0.92306 1.50938 0.92508 1.18876 0.94061 0.92136 0.94566 1.22199 0.95068 0.88864 0.98830 1.63469 1.28726 1.02127 1.31754 1.22780 0.99225 0.97155 0.89683 1.22752 1.01444 0.94988 0.97938 1.22736 1.01018 0.96478 0.94879 1.22571 0.94179 0.90292 0.95972 0.94116 1.21053 0.99009 0.94318 0.92986 0.90453 1.21455 0.99686 0.95815 0.97069 1.21522 1.01311 0.98022 0.94426 1.21411 0.99167 0.94101 1.00006 1.22218 1.01336 0.99217 0.95860 1.21789 0.83217 0.97137 0.93224 0.94735 1.86431 1.27876 1.57843 1.65669 0.92748 0.99556 0.99195 0.90784 0.97824 0.91674 0.95081 0.88950 0.91721 0.89130 0.89879 0.92410 0.90766 0.90713 0.91817 0.91217 0.92020 0.91308 0.91670 0.76961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.04 2.31 4.99 29.85 0.15 2.46 16 10 C 0.08 3.57 3.99 86.30 0.34 3.91 16 11 N -0.54 -20.67 4.63 -860.66 -3.99 -24.65 16 12 C 0.04 1.42 6.20 86.64 0.54 1.96 16 13 C -0.13 -3.48 6.94 31.78 0.22 -3.26 16 14 C -0.11 -2.71 5.34 31.98 0.17 -2.54 16 15 C 0.08 2.39 1.97 45.38 0.09 2.48 16 16 H 0.04 1.41 7.31 -2.39 -0.02 1.39 16 17 C -0.05 -1.48 1.78 -10.80 -0.02 -1.50 16 18 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 19 C -0.10 -2.17 4.82 30.59 0.15 -2.02 16 20 C -0.12 -2.08 5.92 30.59 0.18 -1.90 16 21 C -0.11 -2.10 5.78 30.59 0.18 -1.93 16 22 C -0.15 -3.45 5.64 30.61 0.17 -3.28 16 23 C 0.10 3.04 2.36 30.61 0.07 3.11 16 24 H 0.03 1.28 5.99 -2.38 -0.01 1.26 16 25 O -0.57 -16.29 10.56 -148.98 -1.57 -17.86 16 26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 27 H -0.01 -0.85 7.09 -2.39 -0.02 -0.86 16 28 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 29 H 0.07 3.30 4.72 -2.39 -0.01 3.29 16 30 H 0.00 0.17 7.98 -2.39 -0.02 0.15 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.03 1.26 6.87 -2.39 -0.02 1.24 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.09 1.77 8.02 -2.39 -0.02 1.75 16 36 H 0.08 1.83 8.06 -2.39 -0.02 1.81 16 37 H 0.06 1.37 7.68 -2.38 -0.02 1.35 16 38 H 0.07 1.35 7.16 -2.39 -0.02 1.33 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 1.26 7.68 -2.38 -0.02 1.24 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.38 8.79 9.08 -74.05 -0.67 8.11 16 Total: -1.00 -67.84 334.77 -0.04 -67.87 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.27 Total: 19.09 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 2.94 Total: -33.69 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -3.70 Total: -82.52 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.57 Total: -17.86 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.84 -0.04 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253104286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.295 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds