Wall clock time and date at job start Mon Mar 30 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48509 * 109.47233 * 264.77872 * 3 2 1 5 5 H 1.48498 * 109.47212 * 24.78265 * 3 2 1 6 6 H 1.48505 * 109.47128 * 144.78275 * 3 2 1 7 7 C 1.37879 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00195 * 5.93958 * 7 2 1 9 9 C 1.50704 * 119.99991 * 185.93480 * 7 2 1 10 10 C 1.53113 * 109.52282 * 215.13306 * 9 7 2 11 11 C 1.53043 * 109.27784 * 182.44266 * 10 9 7 12 12 N 1.46843 * 109.52270 * 59.18272 * 11 10 9 13 13 C 1.46904 * 110.99908 * 174.16227 * 12 11 10 14 14 C 1.53004 * 109.46858 * 169.99930 * 13 12 11 15 15 C 1.52998 * 109.47010 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.49329 * 304.97342 * 15 14 13 17 17 C 1.53091 * 109.48349 * 184.94097 * 15 14 13 18 18 C 1.53175 * 109.16461 * 182.40769 * 17 15 14 19 19 C 1.53176 * 109.03504 * 56.98372 * 18 17 15 20 20 C 1.53089 * 109.16250 * 303.01973 * 19 18 17 21 21 O 1.42894 * 109.41977 * 57.60823 * 20 19 18 22 22 C 1.46855 * 111.19767 * 298.25697 * 12 11 10 23 23 C 1.53039 * 109.52265 * 61.74233 * 22 12 11 24 24 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.57766 * 335.29881 * 9 7 2 26 26 H 1.08995 * 109.50248 * 62.50807 * 10 9 7 27 27 H 1.08995 * 109.53857 * 302.40262 * 10 9 7 28 28 H 1.09002 * 109.46142 * 299.16639 * 11 10 9 29 29 H 1.09002 * 109.46408 * 179.19768 * 11 10 9 30 30 H 1.08995 * 109.46899 * 50.00213 * 13 12 11 31 31 H 1.08998 * 109.46759 * 289.99631 * 13 12 11 32 32 H 1.08998 * 109.46836 * 60.00011 * 14 13 12 33 33 H 1.09000 * 109.46917 * 299.99894 * 14 13 12 34 34 H 1.09002 * 109.51792 * 62.50082 * 17 15 14 35 35 H 1.09004 * 109.57337 * 302.34921 * 17 15 14 36 36 H 1.08992 * 109.54559 * 297.11663 * 18 17 15 37 37 H 1.09004 * 109.61688 * 176.89272 * 18 17 15 38 38 H 1.08997 * 109.52422 * 183.11370 * 19 18 17 39 39 H 1.09005 * 109.52262 * 62.92658 * 19 18 17 40 40 H 1.08999 * 109.48073 * 297.62001 * 20 19 18 41 41 H 1.09003 * 109.47950 * 177.59139 * 20 19 18 42 42 H 1.09001 * 109.45770 * 181.75754 * 22 12 11 43 43 H 1.08994 * 109.45934 * 301.72439 * 22 12 11 44 44 H 1.08997 * 109.50233 * 180.87502 * 23 22 12 45 45 H 1.09007 * 109.50143 * 60.76277 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6070 1.9828 -1.3943 5 1 1.3958 2.6820 0.5869 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4689 -2.1268 -0.0977 9 6 3.5055 -1.1976 0.1344 10 6 4.0922 -2.3341 -0.7073 11 6 5.6105 -2.3708 -0.5184 12 7 5.9235 -2.5773 0.9013 13 6 7.3678 -2.7562 1.1014 14 6 7.6839 -2.7186 2.5980 15 6 9.1880 -2.9055 2.8064 16 1 9.5116 -3.8244 2.3174 17 6 9.4891 -2.9914 4.3050 18 6 11.0021 -3.1180 4.5075 19 6 11.6966 -1.9256 3.8425 20 6 11.3103 -1.8808 2.3618 21 8 9.8888 -1.7943 2.2441 22 6 5.4109 -1.4742 1.7240 23 6 3.8867 -1.4106 1.6020 24 1 -0.4850 0.8400 0.0004 25 1 3.9055 -0.2443 -0.2111 26 1 3.8605 -2.1651 -1.7589 27 1 3.6627 -3.2835 -0.3879 28 1 6.0409 -1.4264 -0.8516 29 1 6.0299 -3.1880 -1.1053 30 1 7.9066 -1.9547 0.5961 31 1 7.6754 -3.7172 0.6891 32 1 7.1450 -3.5201 3.1033 33 1 7.3762 -1.7577 3.0102 34 1 8.9908 -3.8642 4.7271 35 1 9.1290 -2.0906 4.8020 36 1 11.3544 -4.0444 4.0541 37 1 11.2294 -3.1242 5.5735 38 1 12.7771 -2.0360 3.9339 39 1 11.3814 -1.0026 4.3293 40 1 11.6616 -2.7862 1.8669 41 1 11.7675 -1.0094 1.8931 42 1 5.6853 -1.6402 2.7658 43 1 5.8423 -0.5341 1.3804 44 1 3.5080 -0.5821 2.2005 45 1 3.4538 -2.3454 1.9585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259972499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:33 Heat of formation + Delta-G solvation = -69.631333 kcal Electronic energy + Delta-G solvation = -21120.297799 eV Core-core repulsion = 18136.407773 eV Total energy + Delta-G solvation = -2983.890026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73809 -38.38508 -34.70008 -33.85172 -32.77007 -31.40493 -30.11301 -28.72587 -26.10270 -24.64849 -23.30741 -22.65001 -21.60537 -20.49050 -20.21091 -18.69439 -16.80981 -16.58571 -16.37185 -15.43289 -14.94807 -14.70894 -14.42606 -14.27355 -14.08783 -13.58050 -13.19876 -12.98512 -12.91162 -12.63103 -12.39596 -12.29352 -11.71277 -11.48528 -11.43264 -11.31268 -11.20626 -10.93012 -10.83608 -10.75458 -10.58403 -10.33869 -10.27712 -9.73429 -9.59085 -9.44002 -9.08317 -8.83759 -8.42782 -7.79952 -6.01054 -3.98259 3.32952 3.41068 3.44047 3.60514 4.22261 4.48281 4.51258 4.57804 4.59371 4.69447 4.93445 5.11822 5.13473 5.25051 5.29951 5.37382 5.39548 5.48313 5.54338 5.64957 5.66357 5.73116 5.77432 5.81006 5.89256 5.92065 5.99527 6.05614 6.20330 6.23145 6.24665 6.37879 6.51679 6.60029 6.85763 6.98564 7.08790 7.09615 7.41135 7.51453 7.66930 7.71876 7.87692 8.62092 9.05639 9.63529 11.12738 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033998 B = 0.003758 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.386171 B = 7448.071871 C = 7636.979614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.013 3.987 10 C -0.100 4.100 11 C 0.057 3.943 12 N -0.535 5.535 13 C 0.058 3.942 14 C -0.115 4.115 15 C 0.092 3.908 16 H 0.057 0.943 17 C -0.151 4.151 18 C -0.122 4.122 19 C -0.157 4.157 20 C 0.061 3.939 21 O -0.376 6.376 22 C 0.049 3.951 23 C -0.106 4.106 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.052 0.948 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.439 -5.611 7.120 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.544 4.544 8 H 0.090 0.910 9 C -0.006 4.006 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.260 5.260 13 C -0.070 4.070 14 C -0.153 4.153 15 C 0.034 3.966 16 H 0.075 0.925 17 C -0.188 4.188 18 C -0.160 4.160 19 C -0.195 4.195 20 C -0.016 4.016 21 O -0.295 6.295 22 C -0.079 4.079 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.928 -5.763 7.175 24.706 hybrid contribution 1.023 1.498 -0.092 1.817 sum 23.951 -4.264 7.083 25.338 Atomic orbital electron populations 1.69918 1.06297 1.26791 1.51248 1.25070 0.94649 0.98902 0.94615 0.86871 0.80180 0.83846 0.78661 1.20372 1.21741 1.19060 1.21042 0.89434 0.94466 1.49467 0.90964 1.19187 0.96493 0.93807 0.91099 1.21614 0.91390 1.00801 0.99996 1.22187 0.98695 0.98530 0.87696 1.62043 1.12131 1.43903 1.07961 1.22029 0.88887 1.00641 0.95427 1.21803 0.92315 1.03685 0.97479 1.22136 0.92884 0.89235 0.92338 0.92494 1.22209 0.96276 1.03144 0.97206 1.21584 0.95364 0.98154 1.00894 1.22197 1.00567 0.99512 0.97198 1.22528 0.82072 1.01797 0.95246 1.87990 1.17486 1.44285 1.79754 1.22346 0.97954 0.90921 0.96638 1.21861 0.91076 1.01204 1.00343 0.92810 0.95696 0.92469 0.92065 0.95814 0.92121 0.94622 0.91537 0.89666 0.90551 0.90741 0.90955 0.91931 0.91564 0.91127 0.91070 0.93423 0.89101 0.91550 0.95993 0.92911 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.08 27.02 -169.99 -4.59 17.49 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.45 6.78 56.52 0.38 -6.07 16 7 C -0.51 -14.38 8.86 -34.44 -0.31 -14.69 16 8 H 0.07 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.01 0.32 1.85 -91.65 -0.17 0.15 16 10 C -0.10 -2.08 5.36 -26.65 -0.14 -2.23 16 11 C 0.06 1.01 5.42 -3.83 -0.02 0.99 16 12 N -0.54 -9.20 4.81 -234.66 -1.13 -10.33 16 13 C 0.06 0.83 5.17 -3.82 -0.02 0.81 16 14 C -0.12 -1.41 4.17 -26.73 -0.11 -1.52 16 15 C 0.09 0.97 2.64 -26.69 -0.07 0.90 16 16 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 17 C -0.15 -1.33 5.42 -26.59 -0.14 -1.48 16 18 C -0.12 -0.92 6.03 -26.55 -0.16 -1.08 16 19 C -0.16 -1.18 6.14 -26.59 -0.16 -1.34 16 20 C 0.06 0.53 6.84 37.20 0.25 0.79 16 21 O -0.38 -4.50 9.94 -35.23 -0.35 -4.85 16 22 C 0.05 0.90 4.85 -3.83 -0.02 0.88 16 23 C -0.11 -2.31 5.36 -26.65 -0.14 -2.46 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.02 0.61 5.24 -51.93 -0.27 0.34 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.96 8.12 -51.93 -0.42 0.53 16 30 H 0.04 0.54 7.76 -51.93 -0.40 0.14 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.01 6.21 -51.93 -0.32 0.69 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.08 5.81 -51.93 -0.30 0.78 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -30.75 338.23 -10.00 -40.74 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -8.48 Total: -2.50 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.31 Total: -18.38 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.35 Total: -37.60 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.35 Total: -4.85 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.59 Total: 17.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.75 -10.00 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.887 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds