Wall clock time and date at job start Mon Mar 30 2020 07:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48509 * 109.47233 * 264.77872 * 3 2 1 5 5 H 1.48498 * 109.47212 * 24.78265 * 3 2 1 6 6 H 1.48505 * 109.47128 * 144.78275 * 3 2 1 7 7 C 1.37879 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00195 * 5.93958 * 7 2 1 9 9 C 1.50704 * 119.99991 * 185.93480 * 7 2 1 10 10 C 1.53113 * 109.52282 * 215.13306 * 9 7 2 11 11 C 1.53043 * 109.27784 * 182.44266 * 10 9 7 12 12 N 1.46843 * 109.52270 * 59.18272 * 11 10 9 13 13 C 1.46904 * 110.99908 * 174.16227 * 12 11 10 14 14 C 1.53004 * 109.46858 * 169.99930 * 13 12 11 15 15 C 1.52998 * 109.47010 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.49329 * 304.97342 * 15 14 13 17 17 C 1.53091 * 109.48349 * 184.94097 * 15 14 13 18 18 C 1.53175 * 109.16461 * 182.40769 * 17 15 14 19 19 C 1.53176 * 109.03504 * 56.98372 * 18 17 15 20 20 C 1.53089 * 109.16250 * 303.01973 * 19 18 17 21 21 O 1.42894 * 109.41977 * 57.60823 * 20 19 18 22 22 C 1.46855 * 111.19767 * 298.25697 * 12 11 10 23 23 C 1.53039 * 109.52265 * 61.74233 * 22 12 11 24 24 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.57766 * 335.29881 * 9 7 2 26 26 H 1.08995 * 109.50248 * 62.50807 * 10 9 7 27 27 H 1.08995 * 109.53857 * 302.40262 * 10 9 7 28 28 H 1.09002 * 109.46142 * 299.16639 * 11 10 9 29 29 H 1.09002 * 109.46408 * 179.19768 * 11 10 9 30 30 H 1.08995 * 109.46899 * 50.00213 * 13 12 11 31 31 H 1.08998 * 109.46759 * 289.99631 * 13 12 11 32 32 H 1.08998 * 109.46836 * 60.00011 * 14 13 12 33 33 H 1.09000 * 109.46917 * 299.99894 * 14 13 12 34 34 H 1.09002 * 109.51792 * 62.50082 * 17 15 14 35 35 H 1.09004 * 109.57337 * 302.34921 * 17 15 14 36 36 H 1.08992 * 109.54559 * 297.11663 * 18 17 15 37 37 H 1.09004 * 109.61688 * 176.89272 * 18 17 15 38 38 H 1.08997 * 109.52422 * 183.11370 * 19 18 17 39 39 H 1.09005 * 109.52262 * 62.92658 * 19 18 17 40 40 H 1.08999 * 109.48073 * 297.62001 * 20 19 18 41 41 H 1.09003 * 109.47950 * 177.59139 * 20 19 18 42 42 H 1.09001 * 109.45770 * 181.75754 * 22 12 11 43 43 H 1.08994 * 109.45934 * 301.72439 * 22 12 11 44 44 H 1.08997 * 109.50233 * 180.87502 * 23 22 12 45 45 H 1.09007 * 109.50143 * 60.76277 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6070 1.9828 -1.3943 5 1 1.3958 2.6820 0.5869 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4689 -2.1268 -0.0977 9 6 3.5055 -1.1976 0.1344 10 6 4.0922 -2.3341 -0.7073 11 6 5.6105 -2.3708 -0.5184 12 7 5.9235 -2.5773 0.9013 13 6 7.3678 -2.7562 1.1014 14 6 7.6839 -2.7186 2.5980 15 6 9.1880 -2.9055 2.8064 16 1 9.5116 -3.8244 2.3174 17 6 9.4891 -2.9914 4.3050 18 6 11.0021 -3.1180 4.5075 19 6 11.6966 -1.9256 3.8425 20 6 11.3103 -1.8808 2.3618 21 8 9.8888 -1.7943 2.2441 22 6 5.4109 -1.4742 1.7240 23 6 3.8867 -1.4106 1.6020 24 1 -0.4850 0.8400 0.0004 25 1 3.9055 -0.2443 -0.2111 26 1 3.8605 -2.1651 -1.7589 27 1 3.6627 -3.2835 -0.3879 28 1 6.0409 -1.4264 -0.8516 29 1 6.0299 -3.1880 -1.1053 30 1 7.9066 -1.9547 0.5961 31 1 7.6754 -3.7172 0.6891 32 1 7.1450 -3.5201 3.1033 33 1 7.3762 -1.7577 3.0102 34 1 8.9908 -3.8642 4.7271 35 1 9.1290 -2.0906 4.8020 36 1 11.3544 -4.0444 4.0541 37 1 11.2294 -3.1242 5.5735 38 1 12.7771 -2.0360 3.9339 39 1 11.3814 -1.0026 4.3293 40 1 11.6616 -2.7862 1.8669 41 1 11.7675 -1.0094 1.8931 42 1 5.6853 -1.6402 2.7658 43 1 5.8423 -0.5341 1.3804 44 1 3.5080 -0.5821 2.2005 45 1 3.4538 -2.3454 1.9585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259972499.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:33 Heat of formation + Delta-G solvation = -88.816600 kcal Electronic energy + Delta-G solvation = -21121.129735 eV Core-core repulsion = 18136.407773 eV Total energy + Delta-G solvation = -2984.721962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57985 -39.76251 -36.20086 -34.52550 -34.37517 -32.97242 -31.65598 -29.86487 -27.67585 -25.58955 -24.44812 -24.04217 -23.04677 -21.49702 -21.10204 -20.41835 -18.97293 -17.39707 -17.34556 -16.67495 -16.06220 -15.87368 -15.67583 -15.35833 -15.26641 -14.86873 -14.71400 -14.56833 -14.09517 -14.06874 -13.61295 -13.40639 -13.02641 -12.80691 -12.76046 -12.66232 -12.37632 -12.16423 -12.07169 -11.97984 -11.80812 -11.75842 -11.51513 -11.23643 -11.11957 -10.95570 -10.75679 -10.60186 -10.30295 -9.16718 -8.28061 -6.29724 1.32904 1.33994 1.45399 2.34952 2.86603 3.02781 3.07476 3.73234 3.90771 3.97448 4.02759 4.12901 4.16199 4.20578 4.28486 4.36376 4.41346 4.43593 4.52474 4.59092 4.69140 4.73686 4.74100 4.81610 4.83302 4.88194 4.94900 4.98887 5.00701 5.06556 5.12694 5.15435 5.20343 5.25528 5.30987 5.35572 5.41983 5.61818 5.68863 5.78251 6.21902 6.29709 6.36904 6.38447 6.77133 7.35299 8.89473 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.033998 B = 0.003758 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.386171 B = 7448.071871 C = 7636.979614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.010 3.990 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.250 1.250 7 C -0.511 4.511 8 H 0.030 0.970 9 C 0.010 3.990 10 C -0.097 4.097 11 C 0.063 3.937 12 N -0.543 5.543 13 C 0.063 3.937 14 C -0.112 4.112 15 C 0.094 3.906 16 H 0.066 0.934 17 C -0.149 4.149 18 C -0.122 4.122 19 C -0.155 4.155 20 C 0.054 3.946 21 O -0.403 6.403 22 C 0.059 3.941 23 C -0.103 4.103 24 H 0.265 0.735 25 H 0.023 0.977 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.024 0.976 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.017 0.983 44 H 0.041 0.959 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.684 -5.688 7.709 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.186 4.186 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.174 1.174 7 C -0.549 4.549 8 H 0.048 0.952 9 C -0.009 4.009 10 C -0.135 4.135 11 C -0.064 4.064 12 N -0.268 5.268 13 C -0.065 4.065 14 C -0.149 4.149 15 C 0.036 3.964 16 H 0.084 0.916 17 C -0.187 4.187 18 C -0.159 4.159 19 C -0.192 4.192 20 C -0.023 4.023 21 O -0.323 6.323 22 C -0.069 4.069 23 C -0.142 4.142 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.105 0.895 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.035 0.965 44 H 0.060 0.940 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 26.203 -5.857 7.765 27.950 hybrid contribution -0.029 1.422 -0.293 1.452 sum 26.175 -4.435 7.472 27.579 Atomic orbital electron populations 1.70066 1.08193 1.27918 1.53137 1.25930 0.95411 1.02875 0.94432 0.85817 0.79268 0.78960 0.79337 1.19314 1.21334 1.17375 1.21327 0.91999 0.92873 1.48674 0.95175 1.19198 0.93458 0.94975 0.93279 1.21498 0.93913 0.98874 0.99176 1.22087 0.95967 0.99711 0.88672 1.62024 1.14353 1.43091 1.07308 1.22075 0.86454 1.01065 0.96867 1.21761 0.93913 1.03251 0.95980 1.22117 0.91575 0.89241 0.93459 0.91576 1.22191 0.97511 1.03079 0.95932 1.21602 0.94231 0.98460 1.01623 1.22180 1.01698 0.99138 0.96207 1.22715 0.80648 1.02600 0.96304 1.87944 1.19170 1.44995 1.80195 1.22193 0.94967 0.91310 0.98390 1.21707 0.93988 1.00187 0.98271 0.92645 0.95914 0.92683 0.93112 0.95757 0.89470 0.95401 0.89976 0.88965 0.91783 0.89754 0.92026 0.91058 0.90607 0.89312 0.92041 0.92439 0.88553 0.89221 0.96461 0.94018 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.94 45.69 27.02 68.60 1.85 47.55 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.25 -11.38 6.78 99.48 0.67 -10.71 16 7 C -0.51 -29.90 8.86 25.60 0.23 -29.68 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 9 C 0.01 0.47 1.85 -11.46 -0.02 0.45 16 10 C -0.10 -3.98 5.36 30.65 0.16 -3.81 16 11 C 0.06 2.12 5.42 86.33 0.47 2.59 16 12 N -0.54 -17.42 4.81 -896.33 -4.31 -21.72 16 13 C 0.06 1.61 5.17 86.30 0.45 2.05 16 14 C -0.11 -2.45 4.17 30.59 0.13 -2.32 16 15 C 0.09 1.75 2.64 30.62 0.08 1.83 16 16 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 17 C -0.15 -2.29 5.42 30.68 0.17 -2.12 16 18 C -0.12 -1.48 6.03 30.71 0.19 -1.29 16 19 C -0.15 -1.94 6.14 30.68 0.19 -1.75 16 20 C 0.05 0.82 6.84 72.01 0.49 1.31 16 21 O -0.40 -8.80 9.94 -148.98 -1.48 -10.29 16 22 C 0.06 2.06 4.85 86.32 0.42 2.48 16 23 C -0.10 -4.44 5.36 30.65 0.16 -4.27 16 24 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 25 H 0.02 1.10 5.24 -2.39 -0.01 1.08 16 26 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 2.48 8.12 -2.39 -0.02 2.46 16 30 H 0.03 0.77 7.76 -2.39 -0.02 0.75 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.57 6.21 -2.39 -0.01 1.55 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 2.72 5.81 -2.39 -0.01 2.70 16 43 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.05 2.28 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -67.32 338.23 0.82 -66.50 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 0.88 Total: 12.04 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.57 Total: -33.50 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -4.01 Total: -82.30 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -1.48 Total: -10.29 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.85 Total: 47.55 kcal Total: -67.32 0.82 -66.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972499.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.315 kcal (2) G-P(sol) polarization free energy of solvation -67.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds