Wall clock time and date at job start Mon Mar 30 2020 07:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00090 * 2 1 4 4 H 1.48503 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46982 * 299.99935 * 3 2 1 6 6 H 1.48504 * 109.46968 * 59.99796 * 3 2 1 7 7 C 1.37878 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53125 * 109.52054 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27858 * 177.56007 * 10 9 7 12 12 N 1.46842 * 109.52143 * 300.82399 * 11 10 9 13 13 C 1.46903 * 111.00032 * 185.84150 * 12 11 10 14 14 C 1.53000 * 109.47358 * 169.99606 * 13 12 11 15 15 C 1.53000 * 109.46968 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.47903 * 55.00262 * 15 14 13 17 17 C 1.53092 * 109.47697 * 175.02588 * 15 14 13 18 18 C 1.53207 * 109.14859 * 177.59587 * 17 15 14 19 19 C 1.53178 * 109.03992 * 303.02293 * 18 17 15 20 20 C 1.53097 * 109.16320 * 56.98185 * 19 18 17 21 21 O 1.42898 * 109.41490 * 302.39102 * 20 19 18 22 22 C 1.46850 * 111.20373 * 61.74267 * 12 11 10 23 23 C 1.53042 * 109.51853 * 298.25631 * 22 12 11 24 24 H 0.97006 * 119.99797 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.52346 * 59.87370 * 9 7 2 26 26 H 1.08996 * 109.50005 * 57.62009 * 10 9 7 27 27 H 1.09000 * 109.53309 * 297.51935 * 10 9 7 28 28 H 1.08995 * 109.46318 * 180.80818 * 11 10 9 29 29 H 1.08998 * 109.45071 * 60.82947 * 11 10 9 30 30 H 1.09001 * 109.46928 * 49.99606 * 13 12 11 31 31 H 1.08998 * 109.46913 * 289.99788 * 13 12 11 32 32 H 1.09001 * 109.47101 * 60.00106 * 14 13 12 33 33 H 1.08998 * 109.47256 * 299.99971 * 14 13 12 34 34 H 1.08999 * 109.52366 * 297.50656 * 17 15 14 35 35 H 1.08992 * 109.52532 * 57.70335 * 17 15 14 36 36 H 1.09004 * 109.54239 * 183.15817 * 18 17 15 37 37 H 1.09000 * 109.61720 * 62.93376 * 18 17 15 38 38 H 1.09003 * 109.52669 * 297.07816 * 19 18 17 39 39 H 1.08997 * 109.52447 * 176.88713 * 19 18 17 40 40 H 1.08995 * 109.47859 * 182.40411 * 20 19 18 41 41 H 1.09000 * 109.48591 * 62.37596 * 20 19 18 42 42 H 1.08995 * 109.46119 * 58.27040 * 22 12 11 43 43 H 1.08997 * 109.46218 * 178.24596 * 22 12 11 44 44 H 1.08991 * 109.50537 * 299.23660 * 23 22 12 45 45 H 1.09000 * 109.53201 * 179.13602 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 0.0620 12 7 0.6542 -5.0186 1.2791 13 6 0.0080 -6.3276 1.4425 14 6 -0.6295 -6.4121 2.8308 15 6 -1.3031 -7.7753 3.0007 16 1 -0.5780 -8.5657 2.8067 17 6 -1.8330 -7.9082 4.4308 18 6 -2.5582 -9.2500 4.5754 19 6 -3.6762 -9.3288 3.5313 20 6 -3.0749 -9.1408 2.1359 21 8 -2.3893 -7.8883 2.0790 22 6 -0.3396 -3.9374 1.2794 23 6 0.3762 -2.5849 1.2543 24 1 -0.4850 0.8401 -0.0004 25 1 0.6226 -2.5569 -0.8883 26 1 2.8996 -3.5835 0.8682 27 1 2.8425 -3.6330 -0.9105 28 1 2.1803 -5.8161 0.0767 29 1 0.8307 -5.0709 -0.8130 30 1 0.7528 -7.1163 1.3362 31 1 -0.7622 -6.4502 0.6810 32 1 -1.3744 -5.6234 2.9372 33 1 0.1406 -6.2895 3.5924 34 1 -1.0004 -7.8663 5.1331 35 1 -2.5277 -7.0946 4.6390 36 1 -2.9865 -9.3272 5.5747 37 1 -1.8531 -10.0660 4.4168 38 1 -4.4081 -8.5437 3.7213 39 1 -4.1618 -10.3028 3.5904 40 1 -3.8716 -9.1533 1.3922 41 1 -2.3731 -9.9490 1.9305 42 1 -0.9753 -4.0283 0.3987 43 1 -0.9521 -4.0074 2.1783 44 1 1.0015 -2.4876 2.1417 45 1 -0.3614 -1.7825 1.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259974380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:36 Heat of formation + Delta-G solvation = -73.003864 kcal Electronic energy + Delta-G solvation = -21050.857141 eV Core-core repulsion = 18066.820870 eV Total energy + Delta-G solvation = -2984.036270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.61278 -38.11072 -34.54960 -33.76659 -32.80011 -31.08457 -29.69948 -28.57126 -25.82267 -24.57659 -23.29667 -22.23221 -21.60433 -20.46186 -20.25840 -18.49607 -16.50941 -16.38110 -16.16247 -15.14340 -14.84065 -14.59697 -14.34381 -14.29116 -14.05995 -13.30317 -13.11194 -12.87035 -12.56037 -12.53903 -12.32330 -12.01896 -11.62820 -11.38065 -11.29021 -11.19876 -10.94173 -10.79695 -10.68341 -10.60849 -10.37632 -10.21385 -10.10459 -9.89368 -9.50940 -9.32897 -8.87617 -8.60151 -8.23150 -7.62354 -5.91133 -3.96255 3.34129 3.42014 3.46327 3.70450 4.34813 4.50222 4.58690 4.66232 4.70550 4.81400 5.02099 5.21772 5.24334 5.37246 5.38921 5.48092 5.51272 5.58865 5.63135 5.74477 5.79433 5.84304 5.89653 5.97479 6.02426 6.05700 6.19483 6.28731 6.34065 6.42240 6.43584 6.72375 6.74081 6.94772 7.16681 7.19069 7.26714 7.53513 7.71921 7.81673 7.92585 8.13289 8.24301 8.55508 9.07794 9.67768 11.14996 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040192 B = 0.003438 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.492722 B = 8143.344979 C = 8371.335829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.538 5.538 13 C 0.058 3.942 14 C -0.108 4.108 15 C 0.092 3.908 16 H 0.055 0.945 17 C -0.150 4.150 18 C -0.122 4.122 19 C -0.157 4.157 20 C 0.060 3.940 21 O -0.375 6.375 22 C 0.056 3.944 23 C -0.104 4.104 24 H 0.258 0.742 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.021 0.979 43 H 0.057 0.943 44 H 0.042 0.958 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.401 -18.748 7.237 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.262 5.262 13 C -0.070 4.070 14 C -0.146 4.146 15 C 0.034 3.966 16 H 0.073 0.927 17 C -0.188 4.188 18 C -0.160 4.160 19 C -0.195 4.195 20 C -0.017 4.017 21 O -0.294 6.294 22 C -0.071 4.071 23 C -0.142 4.142 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.279 -18.390 7.500 20.550 hybrid contribution -0.136 0.492 -0.467 0.692 sum -5.416 -17.898 7.033 19.979 Atomic orbital electron populations 1.69898 1.05845 1.26090 1.51285 1.24977 0.94834 0.98978 0.95318 0.86588 0.80183 0.84067 0.77451 1.19859 1.21189 1.21112 1.21261 0.92892 0.90710 1.49803 0.92748 1.18689 0.92732 0.91712 0.94017 1.21675 0.98681 0.93861 1.00157 1.22089 0.95684 0.99087 0.89810 1.62011 1.23811 1.02295 1.38132 1.21986 0.96881 0.92050 0.96111 1.21640 0.99592 0.94947 0.98373 1.22148 0.87970 0.98316 0.88156 0.92657 1.22213 1.01038 0.97987 0.97576 1.21592 0.97677 0.97578 0.99138 1.22198 0.98757 1.02396 0.96114 1.22523 0.96022 0.86563 0.96556 1.88004 1.46603 1.35382 1.59408 1.22298 0.93105 0.92956 0.98737 1.21652 1.00122 0.93168 0.99265 0.93221 0.96203 0.92558 0.93322 0.92643 0.95943 0.91974 0.94747 0.90803 0.89856 0.90790 0.90910 0.91632 0.91986 0.91044 0.91193 0.89118 0.93508 0.96071 0.92472 0.93931 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 11.37 55.43 0.63 -25.27 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.28 8.56 -34.44 -0.29 -14.57 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.11 -2.31 5.32 -26.65 -0.14 -2.45 16 11 C 0.06 1.16 5.46 -3.84 -0.02 1.14 16 12 N -0.54 -10.05 4.66 -234.67 -1.09 -11.14 16 13 C 0.06 0.90 4.86 -3.82 -0.02 0.88 16 14 C -0.11 -1.45 4.85 -26.73 -0.13 -1.58 16 15 C 0.09 1.06 2.64 -26.68 -0.07 0.99 16 16 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 17 C -0.15 -1.45 5.42 -26.58 -0.14 -1.59 16 18 C -0.12 -0.99 6.03 -26.53 -0.16 -1.15 16 19 C -0.16 -1.28 6.14 -26.59 -0.16 -1.44 16 20 C 0.06 0.57 6.84 37.21 0.25 0.83 16 21 O -0.37 -4.82 9.94 -35.23 -0.35 -5.17 16 22 C 0.06 1.16 5.29 -3.83 -0.02 1.14 16 23 C -0.10 -2.53 5.12 -26.65 -0.14 -2.67 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.93 8.01 -51.93 -0.42 0.51 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16 31 H 0.03 0.57 7.80 -51.93 -0.41 0.17 16 32 H 0.07 1.09 6.43 -51.93 -0.33 0.76 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.09 6.21 -51.93 -0.32 0.77 16 44 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -29.36 339.78 -10.57 -39.93 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.52 Total: -2.20 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -1.34 Total: -17.89 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.46 Total: -36.41 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.35 Total: -5.17 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.36 -10.57 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.071 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds