Wall clock time and date at job start Mon Mar 30 2020 07:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00090 * 2 1 4 4 H 1.48503 * 109.46969 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46982 * 299.99935 * 3 2 1 6 6 H 1.48504 * 109.46968 * 59.99796 * 3 2 1 7 7 C 1.37878 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00224 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.53125 * 109.52054 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.27858 * 177.56007 * 10 9 7 12 12 N 1.46842 * 109.52143 * 300.82399 * 11 10 9 13 13 C 1.46903 * 111.00032 * 185.84150 * 12 11 10 14 14 C 1.53000 * 109.47358 * 169.99606 * 13 12 11 15 15 C 1.53000 * 109.46968 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.47903 * 55.00262 * 15 14 13 17 17 C 1.53092 * 109.47697 * 175.02588 * 15 14 13 18 18 C 1.53207 * 109.14859 * 177.59587 * 17 15 14 19 19 C 1.53178 * 109.03992 * 303.02293 * 18 17 15 20 20 C 1.53097 * 109.16320 * 56.98185 * 19 18 17 21 21 O 1.42898 * 109.41490 * 302.39102 * 20 19 18 22 22 C 1.46850 * 111.20373 * 61.74267 * 12 11 10 23 23 C 1.53042 * 109.51853 * 298.25631 * 22 12 11 24 24 H 0.97006 * 119.99797 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.52346 * 59.87370 * 9 7 2 26 26 H 1.08996 * 109.50005 * 57.62009 * 10 9 7 27 27 H 1.09000 * 109.53309 * 297.51935 * 10 9 7 28 28 H 1.08995 * 109.46318 * 180.80818 * 11 10 9 29 29 H 1.08998 * 109.45071 * 60.82947 * 11 10 9 30 30 H 1.09001 * 109.46928 * 49.99606 * 13 12 11 31 31 H 1.08998 * 109.46913 * 289.99788 * 13 12 11 32 32 H 1.09001 * 109.47101 * 60.00106 * 14 13 12 33 33 H 1.08998 * 109.47256 * 299.99971 * 14 13 12 34 34 H 1.08999 * 109.52366 * 297.50656 * 17 15 14 35 35 H 1.08992 * 109.52532 * 57.70335 * 17 15 14 36 36 H 1.09004 * 109.54239 * 183.15817 * 18 17 15 37 37 H 1.09000 * 109.61720 * 62.93376 * 18 17 15 38 38 H 1.09003 * 109.52669 * 297.07816 * 19 18 17 39 39 H 1.08997 * 109.52447 * 176.88713 * 19 18 17 40 40 H 1.08995 * 109.47859 * 182.40411 * 20 19 18 41 41 H 1.09000 * 109.48591 * 62.37596 * 20 19 18 42 42 H 1.08995 * 109.46119 * 58.27040 * 22 12 11 43 43 H 1.08997 * 109.46218 * 178.24596 * 22 12 11 44 44 H 1.08991 * 109.50537 * 299.23660 * 23 22 12 45 45 H 1.09000 * 109.53201 * 179.13602 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2449 -3.6639 0.0005 11 6 1.4750 -4.9851 0.0620 12 7 0.6542 -5.0186 1.2791 13 6 0.0080 -6.3276 1.4425 14 6 -0.6295 -6.4121 2.8308 15 6 -1.3031 -7.7753 3.0007 16 1 -0.5780 -8.5657 2.8067 17 6 -1.8330 -7.9082 4.4308 18 6 -2.5582 -9.2500 4.5754 19 6 -3.6762 -9.3288 3.5313 20 6 -3.0749 -9.1408 2.1359 21 8 -2.3893 -7.8883 2.0790 22 6 -0.3396 -3.9374 1.2794 23 6 0.3762 -2.5849 1.2543 24 1 -0.4850 0.8401 -0.0004 25 1 0.6226 -2.5569 -0.8883 26 1 2.8996 -3.5835 0.8682 27 1 2.8425 -3.6330 -0.9105 28 1 2.1803 -5.8161 0.0767 29 1 0.8307 -5.0709 -0.8130 30 1 0.7528 -7.1163 1.3362 31 1 -0.7622 -6.4502 0.6810 32 1 -1.3744 -5.6234 2.9372 33 1 0.1406 -6.2895 3.5924 34 1 -1.0004 -7.8663 5.1331 35 1 -2.5277 -7.0946 4.6390 36 1 -2.9865 -9.3272 5.5747 37 1 -1.8531 -10.0660 4.4168 38 1 -4.4081 -8.5437 3.7213 39 1 -4.1618 -10.3028 3.5904 40 1 -3.8716 -9.1533 1.3922 41 1 -2.3731 -9.9490 1.9305 42 1 -0.9753 -4.0283 0.3987 43 1 -0.9521 -4.0074 2.1783 44 1 1.0015 -2.4876 2.1417 45 1 -0.3614 -1.7825 1.2390 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:36 Heat of formation + Delta-G solvation = -89.932946 kcal Electronic energy + Delta-G solvation = -21051.591241 eV Core-core repulsion = 18066.820870 eV Total energy + Delta-G solvation = -2984.770370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.51161 -39.66825 -36.17164 -34.51717 -34.31909 -32.66595 -31.47012 -29.77565 -27.50668 -25.63352 -24.46932 -23.85247 -23.11400 -21.67028 -21.09075 -20.34608 -18.43913 -17.39712 -17.21582 -16.63195 -16.20187 -15.80388 -15.70156 -15.32657 -15.13239 -14.89118 -14.49020 -14.29132 -14.17450 -13.90916 -13.56777 -13.24899 -12.94865 -12.79052 -12.78287 -12.54732 -12.23734 -12.14928 -12.03033 -11.95171 -11.86205 -11.74861 -11.51166 -11.27371 -11.12689 -10.78634 -10.62111 -10.37987 -10.28888 -9.17336 -8.06930 -6.20696 1.40610 1.42075 1.53978 2.44587 2.88201 3.04929 3.19750 3.78126 3.91865 3.98422 4.03420 4.13750 4.21167 4.29030 4.33849 4.41829 4.46459 4.49707 4.58146 4.62400 4.71841 4.77739 4.80042 4.86763 4.91653 4.95460 4.97930 5.02102 5.10059 5.14298 5.16883 5.22543 5.25804 5.32686 5.37276 5.43419 5.57826 5.63945 6.01023 6.03896 6.30222 6.36436 6.40272 6.41709 6.91322 7.47099 8.97919 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040192 B = 0.003438 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.492722 B = 8143.344979 C = 8371.335829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.043 3.957 10 C -0.099 4.099 11 C 0.065 3.935 12 N -0.540 5.540 13 C 0.062 3.938 14 C -0.103 4.103 15 C 0.094 3.906 16 H 0.068 0.932 17 C -0.149 4.149 18 C -0.121 4.121 19 C -0.154 4.154 20 C 0.053 3.947 21 O -0.405 6.405 22 C 0.070 3.930 23 C -0.094 4.094 24 H 0.260 0.740 25 H -0.016 1.016 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.015 0.985 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.005 0.995 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.665 -20.499 8.176 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.024 3.976 10 C -0.137 4.137 11 C -0.063 4.063 12 N -0.265 5.265 13 C -0.066 4.066 14 C -0.141 4.141 15 C 0.037 3.963 16 H 0.086 0.914 17 C -0.187 4.187 18 C -0.158 4.158 19 C -0.192 4.192 20 C -0.023 4.023 21 O -0.325 6.325 22 C -0.058 4.058 23 C -0.133 4.133 24 H 0.069 0.931 25 H 0.003 0.997 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.040 0.960 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.024 0.976 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.542 -20.161 8.441 22.324 hybrid contribution -0.388 1.019 -0.790 1.346 sum -4.930 -19.143 7.651 21.196 Atomic orbital electron populations 1.70042 1.07228 1.26956 1.51660 1.25783 0.95698 1.02482 0.94890 0.85546 0.79108 0.79683 0.77551 1.19099 1.20712 1.20569 1.21617 0.93015 0.92181 1.50141 0.92976 1.18673 0.93201 0.92818 0.92898 1.21541 0.97927 0.93897 1.00289 1.22057 0.95980 0.98491 0.89745 1.61999 1.23382 1.03235 1.37839 1.22057 0.97015 0.90524 0.96969 1.21597 0.99324 0.95908 0.97269 1.22125 0.88026 0.97142 0.89051 0.91418 1.22194 1.01311 0.98615 0.96567 1.21607 0.97705 0.96812 0.99688 1.22183 0.98616 1.03120 0.95293 1.22726 0.96314 0.85628 0.97664 1.87960 1.47224 1.37250 1.60063 1.22035 0.93033 0.91963 0.98763 1.21415 0.99125 0.94519 0.98190 0.93135 0.99741 0.92769 0.92807 0.89213 0.96628 0.89760 0.95977 0.92685 0.89048 0.89660 0.92221 0.90526 0.90909 0.92131 0.89170 0.88636 0.92346 0.97643 0.90973 0.94846 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.82 11.37 21.45 0.24 -54.58 16 2 C 0.01 0.55 5.31 84.66 0.45 1.00 16 3 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 7 C -0.53 -30.44 8.56 25.60 0.22 -30.22 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.04 2.25 2.16 -11.46 -0.02 2.23 16 10 C -0.10 -4.28 5.32 30.65 0.16 -4.11 16 11 C 0.07 2.38 5.46 86.33 0.47 2.85 16 12 N -0.54 -19.61 4.66 -896.37 -4.17 -23.78 16 13 C 0.06 1.81 4.86 86.30 0.42 2.23 16 14 C -0.10 -2.64 4.85 30.59 0.15 -2.49 16 15 C 0.09 1.99 2.64 30.62 0.08 2.07 16 16 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 17 C -0.15 -2.59 5.42 30.69 0.17 -2.43 16 18 C -0.12 -1.64 6.03 30.72 0.19 -1.46 16 19 C -0.15 -2.19 6.14 30.69 0.19 -2.01 16 20 C 0.05 0.91 6.84 72.01 0.49 1.41 16 21 O -0.40 -9.96 9.94 -148.98 -1.48 -11.44 16 22 C 0.07 2.93 5.29 86.33 0.46 3.39 16 23 C -0.09 -4.74 5.12 30.65 0.16 -4.58 16 24 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 25 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 26 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.22 16 28 H 0.09 2.72 8.01 -2.39 -0.02 2.70 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 2.13 7.99 -2.39 -0.02 2.11 16 31 H 0.02 0.71 7.80 -2.39 -0.02 0.69 16 32 H 0.05 1.60 6.43 -2.39 -0.02 1.59 16 33 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.07 2.79 6.21 -2.39 -0.01 2.77 16 44 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.06 3.34 6.17 -2.39 -0.01 3.33 16 Total: -1.00 -64.12 339.78 1.10 -63.02 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.91 Total: 12.06 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.57 Total: -32.12 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -3.93 Total: -78.36 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.48 Total: -11.44 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -64.12 1.10 -63.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.913 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds