Wall clock time and date at job start Mon Mar 30 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00605 * 2 1 4 4 H 1.48498 * 109.47288 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46764 * 60.00172 * 3 2 1 6 6 H 1.48497 * 109.47077 * 300.00298 * 3 2 1 7 7 C 1.37883 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00366 * 175.16047 * 7 2 1 9 9 C 1.50706 * 119.99715 * 355.16280 * 7 2 1 10 10 H 1.08996 * 109.50124 * 35.12909 * 9 7 2 11 11 C 1.53116 * 109.50126 * 275.01243 * 9 7 2 12 12 C 1.53119 * 109.16186 * 182.40377 * 11 9 7 13 13 C 1.53041 * 109.27291 * 57.65777 * 12 11 9 14 14 N 1.46847 * 109.52119 * 300.81599 * 13 12 11 15 15 C 1.46905 * 110.99798 * 185.84057 * 14 13 12 16 16 C 1.53002 * 109.46829 * 45.79714 * 15 14 13 17 17 C 1.53006 * 109.46707 * 180.02562 * 16 15 14 18 18 H 1.09000 * 109.47769 * 304.99222 * 17 16 15 19 19 C 1.53092 * 109.47657 * 184.97564 * 17 16 15 20 20 C 1.53177 * 109.16037 * 182.41804 * 19 17 16 21 21 C 1.53171 * 109.04697 * 56.96332 * 20 19 17 22 22 C 1.53094 * 109.16429 * 303.02607 * 21 20 19 23 23 O 1.42900 * 109.41718 * 57.60745 * 22 21 20 24 24 C 1.46844 * 111.19757 * 61.75075 * 14 13 12 25 25 H 0.96999 * 120.00569 * 185.18944 * 1 2 3 26 26 H 1.09001 * 109.52715 * 302.31065 * 11 9 7 27 27 H 1.09001 * 109.52382 * 62.50065 * 11 9 7 28 28 H 1.08999 * 109.50571 * 297.71669 * 12 11 9 29 29 H 1.09004 * 109.50646 * 177.59561 * 12 11 9 30 30 H 1.09006 * 109.46155 * 180.80954 * 13 12 11 31 31 H 1.08990 * 109.46559 * 60.84075 * 13 12 11 32 32 H 1.09001 * 109.46896 * 165.79465 * 15 14 13 33 33 H 1.08999 * 109.47297 * 285.79795 * 15 14 13 34 34 H 1.09001 * 109.47178 * 299.99578 * 16 15 14 35 35 H 1.08992 * 109.47637 * 59.99620 * 16 15 14 36 36 H 1.08994 * 109.52331 * 302.31297 * 19 17 16 37 37 H 1.08997 * 109.52350 * 62.50155 * 19 17 16 38 38 H 1.09005 * 109.53267 * 297.09256 * 20 19 17 39 39 H 1.09010 * 109.61638 * 176.88224 * 20 19 17 40 40 H 1.09003 * 109.52664 * 183.12080 * 21 20 19 41 41 H 1.08998 * 109.57701 * 62.96566 * 21 20 19 42 42 H 1.09005 * 109.47741 * 297.62606 * 22 21 20 43 43 H 1.09003 * 109.49123 * 177.59837 * 22 21 20 44 44 H 1.08996 * 109.46884 * 178.23926 * 24 14 13 45 45 H 1.09006 * 109.45770 * 58.26120 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 1.2125 6 1 1.8906 2.3964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0815 -1.1959 -0.0794 9 6 1.2549 -2.4969 0.1089 10 1 0.3043 -2.4152 -0.4181 11 6 0.9966 -2.8157 1.5841 12 6 0.2882 -4.1691 1.6894 13 6 1.1502 -5.2435 1.0225 14 7 1.3679 -4.8931 -0.3868 15 6 2.0743 -5.9697 -1.0939 16 6 1.4391 -7.3156 -0.7387 17 6 2.1753 -8.4370 -1.4747 18 1 2.1802 -8.2276 -2.5444 19 6 1.4645 -9.7684 -1.2183 20 6 2.2413 -10.8940 -1.9081 21 6 3.6832 -10.8957 -1.3916 22 6 4.3082 -9.5207 -1.6415 23 8 3.5203 -8.5168 -0.9985 24 6 2.0887 -3.6199 -0.5122 25 1 -0.4851 -0.8365 0.0760 26 1 1.9453 -2.8585 2.1191 27 1 0.3666 -2.0400 2.0195 28 1 -0.6778 -4.1142 1.1876 29 1 0.1398 -4.4215 2.7393 30 1 0.6420 -6.2060 1.0830 31 1 2.1107 -5.3075 1.5335 32 1 2.0023 -5.8065 -2.1692 33 1 3.1229 -5.9730 -0.7963 34 1 1.5111 -7.4789 0.3366 35 1 0.3906 -7.3124 -1.0363 36 1 1.4232 -9.9587 -0.1459 37 1 0.4524 -9.7244 -1.6206 38 1 2.2401 -10.7303 -2.9858 39 1 1.7726 -11.8525 -1.6845 40 1 4.2579 -11.6580 -1.9178 41 1 3.6881 -11.1092 -0.3227 42 1 4.3411 -9.3257 -2.7135 43 1 5.3205 -9.5024 -1.2375 44 1 2.2623 -3.4030 -1.5661 45 1 3.0449 -3.6915 0.0062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:39 Heat of formation + Delta-G solvation = -75.390288 kcal Electronic energy + Delta-G solvation = -21122.039995 eV Core-core repulsion = 18137.900241 eV Total energy + Delta-G solvation = -2984.139753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69194 -38.30369 -34.70604 -33.81899 -32.84591 -31.52636 -29.77881 -28.39914 -25.20171 -24.56909 -23.81825 -22.26218 -21.92250 -20.45751 -20.20155 -18.84606 -16.71384 -16.56014 -16.27147 -15.19356 -14.90414 -14.60612 -14.33284 -14.24511 -13.73037 -13.68188 -13.48100 -12.92552 -12.67651 -12.59285 -12.50676 -11.81483 -11.67979 -11.57368 -11.40700 -11.31894 -11.16307 -10.84195 -10.78139 -10.70271 -10.38907 -10.16411 -10.07859 -9.93949 -9.57432 -9.46429 -9.13765 -8.36294 -8.20534 -7.63820 -6.27651 -3.97821 3.47485 3.51021 3.64686 3.64996 4.31544 4.54076 4.57186 4.61407 4.67555 4.74149 4.97718 5.16395 5.18354 5.30322 5.41667 5.43666 5.45870 5.52523 5.57365 5.65248 5.71024 5.74469 5.77078 5.81499 5.92535 6.00014 6.03859 6.18556 6.23430 6.32129 6.36439 6.47458 6.57199 6.64569 6.83853 7.03591 7.10132 7.14151 7.53825 7.65927 7.78885 7.85556 8.38056 8.53210 8.97567 9.74797 11.11716 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.038438 B = 0.003543 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.264228 B = 7900.547368 C = 8260.925382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 1.071 2.929 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.594 4.594 8 H 0.047 0.953 9 C 0.036 3.964 10 H 0.039 0.961 11 C -0.109 4.109 12 C -0.119 4.119 13 C 0.058 3.942 14 N -0.541 5.541 15 C 0.058 3.942 16 C -0.114 4.114 17 C 0.091 3.909 18 H 0.058 0.942 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.060 3.940 23 O -0.376 6.376 24 C 0.075 3.925 25 H 0.272 0.728 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.023 0.977 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -21.181 -2.468 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.183 4.183 3 Si 0.900 3.100 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.065 0.935 9 C 0.017 3.983 10 H 0.057 0.943 11 C -0.147 4.147 12 C -0.157 4.157 13 C -0.070 4.070 14 N -0.266 5.266 15 C -0.070 4.070 16 C -0.151 4.151 17 C 0.033 3.967 18 H 0.076 0.924 19 C -0.188 4.188 20 C -0.160 4.160 21 C -0.194 4.194 22 C -0.017 4.017 23 O -0.295 6.295 24 C -0.052 4.052 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.793 -19.349 -2.615 19.890 hybrid contribution 0.990 -2.047 0.261 2.288 sum 4.783 -21.396 -2.354 22.050 Atomic orbital electron populations 1.70705 1.06808 1.31210 1.46347 1.25763 0.96550 1.02415 0.93606 0.83526 0.74506 0.75085 0.76884 1.21630 1.21456 1.21408 1.21972 0.94427 0.91706 1.55192 0.93512 1.18869 0.96378 0.92152 0.90919 0.94269 1.21774 0.98290 0.93827 1.00826 1.21683 0.99405 0.96550 0.98091 1.22092 0.98151 0.98151 0.88558 1.62134 1.49177 1.03028 1.12274 1.22021 0.96001 0.90029 0.98925 1.21797 0.99361 0.92898 1.01069 1.22142 0.82326 0.94400 0.97800 0.92431 1.22204 0.99616 0.95133 1.01803 1.21587 0.95423 0.98893 1.00108 1.22192 0.96760 0.98206 1.02265 1.22534 0.94891 0.87132 0.97131 1.87990 1.22556 1.55635 1.63280 1.22210 0.94819 0.88002 1.00174 0.91621 0.94110 0.92986 0.92019 0.93327 0.91612 0.95898 0.91493 0.94670 0.90814 0.89826 0.91056 0.90783 0.91894 0.91604 0.91135 0.91126 0.93375 0.89084 0.92077 0.96440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.86 13.63 55.43 0.76 -27.10 16 2 C 0.02 0.60 5.45 -17.82 -0.10 0.51 16 3 Si 1.07 25.65 29.91 -169.99 -5.08 20.57 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.59 -16.91 8.32 -34.43 -0.29 -17.19 16 8 H 0.05 1.34 7.81 -52.49 -0.41 0.93 16 9 C 0.04 0.92 1.99 -91.69 -0.18 0.74 16 10 H 0.04 1.10 6.67 -51.93 -0.35 0.76 16 11 C -0.11 -2.54 5.27 -26.61 -0.14 -2.68 16 12 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 13 C 0.06 1.04 4.85 -3.83 -0.02 1.03 16 14 N -0.54 -10.39 4.81 -234.66 -1.13 -11.52 16 15 C 0.06 0.94 5.17 -3.82 -0.02 0.92 16 16 C -0.11 -1.48 4.17 -26.73 -0.11 -1.59 16 17 C 0.09 1.04 2.64 -26.68 -0.07 0.96 16 18 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 19 C -0.15 -1.38 5.42 -26.59 -0.14 -1.52 16 20 C -0.12 -0.96 6.03 -26.55 -0.16 -1.12 16 21 C -0.16 -1.23 6.14 -26.59 -0.16 -1.40 16 22 C 0.06 0.57 6.84 37.21 0.25 0.82 16 23 O -0.38 -4.76 9.94 -35.23 -0.35 -5.11 16 24 C 0.07 1.69 4.69 -3.83 -0.02 1.67 16 25 H 0.27 8.29 6.66 -40.82 -0.27 8.01 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.02 5.81 -51.93 -0.30 0.71 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.61 7.76 -51.93 -0.40 0.20 16 34 H 0.07 0.99 6.21 -51.93 -0.32 0.67 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -30.54 340.13 -10.46 -41.00 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.46 Total: -1.64 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.32 Total: -21.33 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.37 Total: -38.63 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.35 Total: -5.11 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.54 -10.46 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.393 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds