Wall clock time and date at job start Mon Mar 30 2020 07:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00039 * 2 1 4 4 H 1.48502 * 109.47232 * 264.77671 * 3 2 1 5 5 H 1.48498 * 109.47501 * 24.77815 * 3 2 1 6 6 H 1.48501 * 109.47139 * 144.77745 * 3 2 1 7 7 C 1.37879 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00122 * 5.74870 * 7 2 1 9 9 C 1.50701 * 119.99730 * 185.75378 * 7 2 1 10 10 H 1.08997 * 109.50616 * 335.24646 * 9 7 2 11 11 C 1.53116 * 109.53809 * 95.35098 * 9 7 2 12 12 C 1.53123 * 109.16147 * 177.61069 * 11 9 7 13 13 C 1.53031 * 109.28074 * 302.35078 * 12 11 9 14 14 N 1.46843 * 109.52660 * 59.17206 * 13 12 11 15 15 C 1.46900 * 111.00235 * 174.16209 * 14 13 12 16 16 C 1.52998 * 109.47213 * 294.21467 * 15 14 13 17 17 C 1.53008 * 109.47508 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.47172 * 304.97644 * 17 16 15 19 19 C 1.53083 * 109.48199 * 184.94383 * 17 16 15 20 20 C 1.53183 * 109.16422 * 182.40448 * 19 17 16 21 21 C 1.53208 * 109.03734 * 56.97904 * 20 19 17 22 22 C 1.53088 * 109.14956 * 303.02624 * 21 20 19 23 23 O 1.42894 * 109.47859 * 64.99435 * 17 16 15 24 24 C 1.46840 * 111.20347 * 298.26177 * 14 13 12 25 25 H 0.97002 * 120.00509 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.52098 * 297.51740 * 11 9 7 27 27 H 1.09003 * 109.52363 * 57.64557 * 11 9 7 28 28 H 1.09000 * 109.49840 * 62.28692 * 12 11 9 29 29 H 1.08995 * 109.50612 * 182.40089 * 12 11 9 30 30 H 1.09001 * 109.46284 * 299.15997 * 13 12 11 31 31 H 1.08998 * 109.46714 * 179.19677 * 13 12 11 32 32 H 1.08999 * 109.47599 * 174.21725 * 15 14 13 33 33 H 1.08997 * 109.47150 * 54.21052 * 15 14 13 34 34 H 1.08997 * 109.47363 * 59.99610 * 16 15 14 35 35 H 1.09005 * 109.47278 * 299.99565 * 16 15 14 36 36 H 1.09000 * 109.52546 * 302.30861 * 19 17 16 37 37 H 1.09002 * 109.52549 * 62.49871 * 19 17 16 38 38 H 1.09000 * 109.54178 * 176.84371 * 20 19 17 39 39 H 1.08999 * 109.54154 * 297.11437 * 20 19 17 40 40 H 1.09003 * 109.53411 * 183.12359 * 21 20 19 41 41 H 1.09002 * 109.52233 * 62.92647 * 21 20 19 42 42 H 1.09000 * 109.48294 * 297.61492 * 22 21 20 43 43 H 1.09002 * 109.47815 * 177.59316 * 22 21 20 44 44 H 1.08997 * 109.46558 * 181.75541 * 24 14 13 45 45 H 1.09003 * 109.46339 * 301.73871 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3958 2.6820 0.5868 6 1 3.4871 1.4745 0.8075 7 6 2.0044 -1.1941 0.0005 8 1 1.4685 -2.1271 -0.0927 9 6 3.5057 -1.1973 0.1314 10 1 3.9036 -0.2449 -0.2187 11 6 3.8914 -1.4042 1.5987 12 6 5.4171 -1.4658 1.7134 13 6 5.9454 -2.5954 0.8265 14 7 5.5508 -2.3510 -0.5667 15 6 6.1570 -3.3409 -1.4670 16 6 7.6761 -3.1594 -1.4759 17 6 8.3075 -4.1901 -2.4142 18 1 7.9914 -5.1909 -2.1200 19 6 9.8327 -4.0906 -2.3296 20 6 10.4568 -5.0832 -3.3154 21 6 9.9319 -4.7860 -4.7237 22 6 8.4028 -4.8586 -4.7153 23 8 7.8882 -3.9330 -3.7558 24 6 4.0895 -2.3349 -0.7098 25 1 -0.4851 0.8400 -0.0004 26 1 3.5145 -0.5733 2.1950 27 1 3.4601 -2.3375 1.9606 28 1 5.8450 -0.5174 1.3883 29 1 5.6968 -1.6555 2.7496 30 1 5.5279 -3.5452 1.1608 31 1 7.0326 -2.6328 0.8948 32 1 5.7685 -3.2007 -2.4757 33 1 5.9131 -4.3450 -1.1200 34 1 8.0647 -3.2996 -0.4673 35 1 7.9201 -2.1553 -1.8230 36 1 10.1465 -3.0783 -2.5845 37 1 10.1579 -4.3296 -1.3171 38 1 11.5417 -4.9782 -3.3009 39 1 10.1837 -6.0995 -3.0314 40 1 10.3277 -5.5223 -5.4231 41 1 10.2476 -3.7877 -5.0269 42 1 8.0882 -5.8683 -4.4515 43 1 8.0215 -4.6060 -5.7048 44 1 3.8287 -2.1828 -1.7571 45 1 3.6806 -3.2857 -0.3680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:42 Heat of formation + Delta-G solvation = -72.865757 kcal Electronic energy + Delta-G solvation = -21099.982135 eV Core-core repulsion = 18115.951854 eV Total energy + Delta-G solvation = -2984.030281 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.64929 -38.31331 -34.56560 -33.79794 -32.69995 -31.68025 -30.22026 -28.63465 -25.20646 -24.96291 -23.85952 -22.20376 -21.68753 -20.51139 -20.17930 -18.70459 -16.83780 -16.55032 -16.22651 -15.33600 -14.90336 -14.72109 -14.38241 -14.20551 -13.87887 -13.53695 -13.39104 -12.92702 -12.75229 -12.60918 -12.45716 -12.25211 -11.87674 -11.69850 -11.34784 -11.15298 -11.07680 -10.94279 -10.85442 -10.70049 -10.49932 -10.35983 -10.13623 -9.74902 -9.55782 -9.45491 -9.17935 -8.86902 -8.43679 -7.70132 -6.02237 -4.01072 3.37188 3.44206 3.49209 3.67357 4.28605 4.49774 4.55484 4.62382 4.65388 4.76878 4.99721 5.16464 5.23995 5.28170 5.30276 5.35635 5.47606 5.54386 5.57505 5.61651 5.66664 5.74689 5.77401 5.81233 5.90947 5.96383 6.03480 6.10645 6.19465 6.31218 6.35416 6.42786 6.50113 6.59002 6.76847 6.90805 6.98590 7.17268 7.38362 7.54928 7.67565 7.74870 7.95242 8.59373 9.02871 9.62069 11.11130 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.003882 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.949572 B = 7211.598520 C = 7575.866293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.512 4.512 8 H 0.070 0.930 9 C 0.020 3.980 10 H 0.039 0.961 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.060 3.940 14 N -0.543 5.543 15 C 0.059 3.941 16 C -0.108 4.108 17 C 0.092 3.908 18 H 0.055 0.945 19 C -0.150 4.150 20 C -0.123 4.123 21 C -0.157 4.157 22 C 0.060 3.940 23 O -0.373 6.373 24 C 0.073 3.927 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.998 -9.754 -4.969 23.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.550 4.550 8 H 0.088 0.912 9 C 0.001 3.999 10 H 0.057 0.943 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.068 4.068 14 N -0.268 5.268 15 C -0.069 4.069 16 C -0.145 4.145 17 C 0.034 3.966 18 H 0.072 0.928 19 C -0.188 4.188 20 C -0.160 4.160 21 C -0.194 4.194 22 C -0.017 4.017 23 O -0.292 6.292 24 C -0.054 4.054 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 20.868 -9.021 -5.147 23.309 hybrid contribution 0.267 -0.207 0.266 0.430 sum 21.134 -9.228 -4.880 23.572 Atomic orbital electron populations 1.69917 1.06380 1.26944 1.50865 1.25051 0.94658 0.99044 0.94260 0.86820 0.80156 0.83421 0.78921 1.20149 1.21878 1.18766 1.20979 0.89303 0.94502 1.50202 0.91175 1.19159 0.95752 0.94439 0.90586 0.94272 1.21857 0.92019 1.00728 1.00410 1.21680 0.98474 0.98436 0.97235 1.22033 0.98847 0.97050 0.88864 1.62031 1.11406 1.48147 1.05208 1.22006 0.93752 0.93053 0.98074 1.21645 0.95649 0.99515 0.97736 1.22132 0.92815 0.98634 0.83039 0.92753 1.22209 0.96164 1.00553 0.99856 1.21595 1.00290 0.99238 0.94895 1.22202 0.97099 1.02703 0.97444 1.22537 0.92781 0.93152 0.93248 1.88009 1.71699 1.53342 1.16111 1.22243 0.83433 0.98787 1.00901 0.92736 0.93041 0.93308 0.92038 0.93064 0.95752 0.91970 0.90268 0.95896 0.90752 0.90265 0.90898 0.90983 0.91638 0.91977 0.91157 0.91046 0.93459 0.88980 0.91464 0.95992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.15 27.01 -169.99 -4.59 17.56 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.26 -6.38 6.78 56.52 0.38 -6.00 16 7 C -0.51 -14.53 8.86 -34.44 -0.31 -14.84 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.02 0.48 1.94 -91.69 -0.18 0.30 16 10 H 0.04 0.98 5.25 -51.93 -0.27 0.71 16 11 C -0.11 -2.42 5.27 -26.61 -0.14 -2.56 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C 0.06 0.99 5.29 -3.84 -0.02 0.97 16 14 N -0.54 -9.87 4.66 -234.68 -1.09 -10.96 16 15 C 0.06 0.91 4.86 -3.82 -0.02 0.89 16 16 C -0.11 -1.35 4.85 -26.73 -0.13 -1.48 16 17 C 0.09 1.02 2.64 -26.68 -0.07 0.94 16 18 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 19 C -0.15 -1.35 5.42 -26.59 -0.14 -1.50 16 20 C -0.12 -0.95 6.03 -26.53 -0.16 -1.11 16 21 C -0.16 -1.23 6.14 -26.58 -0.16 -1.39 16 22 C 0.06 0.56 6.84 37.20 0.25 0.81 16 23 O -0.37 -4.67 9.94 -35.23 -0.35 -5.02 16 24 C 0.07 1.56 4.73 -3.83 -0.02 1.54 16 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.87 6.21 -51.93 -0.32 0.55 16 32 H 0.08 1.30 7.67 -51.93 -0.40 0.90 16 33 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.07 0.85 6.43 -51.93 -0.33 0.52 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.47 8.01 -51.93 -0.42 1.05 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 339.34 15.07 5.11 5.11 Total: -1.00 -30.62 339.34 -10.01 -40.63 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.51 Total: -2.42 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -1.35 Total: -17.73 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.32 Total: -38.14 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.35 Total: -5.02 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.59 Total: 17.56 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.62 -10.01 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.236 kcal (2) G-P(sol) polarization free energy of solvation -30.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds