Wall clock time and date at job start Mon Mar 30 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00039 * 2 1 4 4 H 1.48502 * 109.47232 * 264.77671 * 3 2 1 5 5 H 1.48498 * 109.47501 * 24.77815 * 3 2 1 6 6 H 1.48501 * 109.47139 * 144.77745 * 3 2 1 7 7 C 1.37879 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00122 * 5.74870 * 7 2 1 9 9 C 1.50701 * 119.99730 * 185.75378 * 7 2 1 10 10 H 1.08997 * 109.50616 * 335.24646 * 9 7 2 11 11 C 1.53116 * 109.53809 * 95.35098 * 9 7 2 12 12 C 1.53123 * 109.16147 * 177.61069 * 11 9 7 13 13 C 1.53031 * 109.28074 * 302.35078 * 12 11 9 14 14 N 1.46843 * 109.52660 * 59.17206 * 13 12 11 15 15 C 1.46900 * 111.00235 * 174.16209 * 14 13 12 16 16 C 1.52998 * 109.47213 * 294.21467 * 15 14 13 17 17 C 1.53008 * 109.47508 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.47172 * 304.97644 * 17 16 15 19 19 C 1.53083 * 109.48199 * 184.94383 * 17 16 15 20 20 C 1.53183 * 109.16422 * 182.40448 * 19 17 16 21 21 C 1.53208 * 109.03734 * 56.97904 * 20 19 17 22 22 C 1.53088 * 109.14956 * 303.02624 * 21 20 19 23 23 O 1.42894 * 109.47859 * 64.99435 * 17 16 15 24 24 C 1.46840 * 111.20347 * 298.26177 * 14 13 12 25 25 H 0.97002 * 120.00509 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.52098 * 297.51740 * 11 9 7 27 27 H 1.09003 * 109.52363 * 57.64557 * 11 9 7 28 28 H 1.09000 * 109.49840 * 62.28692 * 12 11 9 29 29 H 1.08995 * 109.50612 * 182.40089 * 12 11 9 30 30 H 1.09001 * 109.46284 * 299.15997 * 13 12 11 31 31 H 1.08998 * 109.46714 * 179.19677 * 13 12 11 32 32 H 1.08999 * 109.47599 * 174.21725 * 15 14 13 33 33 H 1.08997 * 109.47150 * 54.21052 * 15 14 13 34 34 H 1.08997 * 109.47363 * 59.99610 * 16 15 14 35 35 H 1.09005 * 109.47278 * 299.99565 * 16 15 14 36 36 H 1.09000 * 109.52546 * 302.30861 * 19 17 16 37 37 H 1.09002 * 109.52549 * 62.49871 * 19 17 16 38 38 H 1.09000 * 109.54178 * 176.84371 * 20 19 17 39 39 H 1.08999 * 109.54154 * 297.11437 * 20 19 17 40 40 H 1.09003 * 109.53411 * 183.12359 * 21 20 19 41 41 H 1.09002 * 109.52233 * 62.92647 * 21 20 19 42 42 H 1.09000 * 109.48294 * 297.61492 * 22 21 20 43 43 H 1.09002 * 109.47815 * 177.59316 * 22 21 20 44 44 H 1.08997 * 109.46558 * 181.75541 * 24 14 13 45 45 H 1.09003 * 109.46339 * 301.73871 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3958 2.6820 0.5868 6 1 3.4871 1.4745 0.8075 7 6 2.0044 -1.1941 0.0005 8 1 1.4685 -2.1271 -0.0927 9 6 3.5057 -1.1973 0.1314 10 1 3.9036 -0.2449 -0.2187 11 6 3.8914 -1.4042 1.5987 12 6 5.4171 -1.4658 1.7134 13 6 5.9454 -2.5954 0.8265 14 7 5.5508 -2.3510 -0.5667 15 6 6.1570 -3.3409 -1.4670 16 6 7.6761 -3.1594 -1.4759 17 6 8.3075 -4.1901 -2.4142 18 1 7.9914 -5.1909 -2.1200 19 6 9.8327 -4.0906 -2.3296 20 6 10.4568 -5.0832 -3.3154 21 6 9.9319 -4.7860 -4.7237 22 6 8.4028 -4.8586 -4.7153 23 8 7.8882 -3.9330 -3.7558 24 6 4.0895 -2.3349 -0.7098 25 1 -0.4851 0.8400 -0.0004 26 1 3.5145 -0.5733 2.1950 27 1 3.4601 -2.3375 1.9606 28 1 5.8450 -0.5174 1.3883 29 1 5.6968 -1.6555 2.7496 30 1 5.5279 -3.5452 1.1608 31 1 7.0326 -2.6328 0.8948 32 1 5.7685 -3.2007 -2.4757 33 1 5.9131 -4.3450 -1.1200 34 1 8.0647 -3.2996 -0.4673 35 1 7.9201 -2.1553 -1.8230 36 1 10.1465 -3.0783 -2.5845 37 1 10.1579 -4.3296 -1.3171 38 1 11.5417 -4.9782 -3.3009 39 1 10.1837 -6.0995 -3.0314 40 1 10.3277 -5.5223 -5.4231 41 1 10.2476 -3.7877 -5.0269 42 1 8.0882 -5.8683 -4.4515 43 1 8.0215 -4.6060 -5.7048 44 1 3.8287 -2.1828 -1.7571 45 1 3.6806 -3.2857 -0.3680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:41 Heat of formation + Delta-G solvation = -91.995880 kcal Electronic energy + Delta-G solvation = -21100.811680 eV Core-core repulsion = 18115.951854 eV Total energy + Delta-G solvation = -2984.859826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.52117 -39.75191 -36.04143 -34.52087 -34.45974 -33.00140 -31.97857 -29.67583 -26.92913 -26.20083 -24.80304 -23.41869 -23.19667 -21.61305 -21.07569 -20.43081 -18.97813 -17.39867 -17.19964 -16.70681 -16.06454 -15.96679 -15.54834 -15.31732 -15.24041 -14.92118 -14.64890 -14.53394 -14.17119 -14.01195 -13.58785 -13.48802 -12.99839 -12.95000 -12.85791 -12.65557 -12.33203 -12.05502 -12.03265 -11.85089 -11.78617 -11.63662 -11.53813 -11.28663 -11.19553 -11.00195 -10.76642 -10.61848 -10.28717 -9.16237 -8.29327 -6.32565 1.36505 1.37341 1.49593 2.36485 2.88944 2.98852 3.11291 3.79962 3.92272 3.98349 4.05052 4.07485 4.12913 4.22731 4.26586 4.35236 4.41765 4.47507 4.54559 4.58869 4.65940 4.69959 4.80305 4.83393 4.87837 4.90801 4.95973 4.99522 5.09278 5.10195 5.12597 5.15909 5.21648 5.23945 5.28698 5.32093 5.44071 5.57371 5.66059 5.76791 6.17928 6.31987 6.39823 6.40736 6.75396 7.33676 8.87865 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030495 B = 0.003882 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.949572 B = 7211.598520 C = 7575.866293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.517 4.517 8 H 0.028 0.972 9 C 0.019 3.981 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.113 4.113 13 C 0.059 3.941 14 N -0.549 5.549 15 C 0.062 3.938 16 C -0.098 4.098 17 C 0.091 3.909 18 H 0.059 0.941 19 C -0.147 4.147 20 C -0.122 4.122 21 C -0.154 4.154 22 C 0.052 3.948 23 O -0.403 6.403 24 C 0.084 3.916 25 H 0.266 0.734 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.026 0.974 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.568 -9.893 -4.434 26.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.555 4.555 8 H 0.046 0.954 9 C -0.001 4.001 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.151 4.151 13 C -0.069 4.069 14 N -0.274 5.274 15 C -0.066 4.066 16 C -0.136 4.136 17 C 0.033 3.967 18 H 0.077 0.923 19 C -0.184 4.184 20 C -0.160 4.160 21 C -0.191 4.191 22 C -0.024 4.024 23 O -0.323 6.323 24 C -0.044 4.044 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.114 0.886 44 H 0.070 0.930 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 24.468 -9.181 -4.612 26.538 hybrid contribution -0.911 -0.277 0.061 0.954 sum 23.557 -9.458 -4.551 25.789 Atomic orbital electron populations 1.70059 1.08248 1.28070 1.52757 1.25920 0.95424 1.02984 0.94052 0.85770 0.79358 0.78576 0.79424 1.19495 1.21338 1.16855 1.21268 0.91886 0.92923 1.49467 0.95398 1.19116 0.92759 0.95193 0.92994 0.94816 1.21734 0.95478 0.99823 0.97876 1.21639 0.94799 0.99076 0.99604 1.22149 1.00932 0.96522 0.87252 1.61989 1.08793 1.49628 1.06978 1.22017 0.95593 0.92500 0.96444 1.21578 0.93255 0.99484 0.99265 1.22158 0.94158 0.98101 0.82266 0.92346 1.22176 0.94468 1.00627 1.01152 1.21619 1.00974 0.99148 0.94225 1.22179 0.95829 1.02894 0.98216 1.22723 0.93997 0.92902 0.92815 1.87966 1.72621 1.54563 1.17107 1.21908 0.86053 0.97121 0.99309 0.92542 0.94233 0.94086 0.92018 0.89844 0.95594 0.88380 0.92055 0.95377 0.88869 0.91424 0.91622 0.89510 0.90313 0.91325 0.89363 0.91761 0.92840 0.88616 0.92973 0.97074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 2 C 0.01 0.78 5.47 84.66 0.46 1.24 16 3 Si 0.94 45.99 27.01 68.60 1.85 47.84 16 4 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.24 -11.12 6.78 99.48 0.67 -10.45 16 7 C -0.52 -30.46 8.86 25.60 0.23 -30.24 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 C 0.02 0.90 1.94 -11.49 -0.02 0.88 16 10 H 0.03 1.66 5.25 -2.39 -0.01 1.65 16 11 C -0.11 -4.69 5.27 30.67 0.16 -4.53 16 12 C -0.11 -3.67 6.09 30.65 0.19 -3.48 16 13 C 0.06 1.75 5.29 86.32 0.46 2.20 16 14 N -0.55 -19.12 4.66 -896.40 -4.17 -23.29 16 15 C 0.06 1.83 4.86 86.30 0.42 2.25 16 16 C -0.10 -2.24 4.85 30.60 0.15 -2.09 16 17 C 0.09 1.82 2.64 30.62 0.08 1.90 16 18 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 19 C -0.15 -2.23 5.42 30.68 0.17 -2.07 16 20 C -0.12 -1.53 6.03 30.73 0.19 -1.35 16 21 C -0.15 -2.07 6.14 30.69 0.19 -1.88 16 22 C 0.05 0.90 6.84 72.01 0.49 1.39 16 23 O -0.40 -9.68 9.94 -148.98 -1.48 -11.16 16 24 C 0.08 3.62 4.73 86.33 0.41 4.03 16 25 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 2.27 6.21 -2.39 -0.01 2.26 16 32 H 0.06 2.01 7.67 -2.39 -0.02 1.99 16 33 H 0.03 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.09 1.76 6.43 -2.39 -0.02 1.74 16 35 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 2.35 8.01 -2.39 -0.02 2.33 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -68.21 339.34 0.94 -67.27 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.88 Total: 11.63 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 3.56 Total: -31.73 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -3.87 Total: -83.84 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -1.48 Total: -11.16 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.85 Total: 47.84 kcal Total: -68.21 0.94 -67.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.729 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds