Wall clock time and date at job start Mon Mar 30 2020 07:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48506 * 109.46875 * 89.99905 * 3 2 1 5 5 H 1.48496 * 109.47069 * 209.99731 * 3 2 1 6 6 H 1.48501 * 109.47275 * 330.00009 * 3 2 1 7 7 C 1.37878 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00413 * 342.88912 * 7 2 1 9 9 C 1.50698 * 119.99716 * 162.89746 * 7 2 1 10 10 H 1.08997 * 109.50565 * 54.57882 * 9 7 2 11 11 C 1.53121 * 109.50296 * 294.50619 * 9 7 2 12 12 C 1.53124 * 109.16207 * 182.40627 * 11 9 7 13 13 C 1.53042 * 109.27506 * 57.65085 * 12 11 9 14 14 N 1.46837 * 109.52414 * 300.81902 * 13 12 11 15 15 C 1.46898 * 110.99901 * 185.83864 * 14 13 12 16 16 C 1.52998 * 109.47776 * 293.95813 * 15 14 13 17 17 C 1.52993 * 109.47384 * 179.97438 * 16 15 14 18 18 H 1.09003 * 109.48043 * 55.02406 * 17 16 15 19 19 C 1.53099 * 109.47977 * 175.05808 * 17 16 15 20 20 C 1.53181 * 109.16238 * 177.59070 * 19 17 16 21 21 C 1.53173 * 109.03791 * 303.01932 * 20 19 17 22 22 C 1.53089 * 109.16538 * 56.97991 * 21 20 19 23 23 O 1.42903 * 109.48225 * 294.99674 * 17 16 15 24 24 C 1.46850 * 111.19782 * 61.74963 * 14 13 12 25 25 H 0.96994 * 119.99754 * 174.69553 * 1 2 3 26 26 H 1.09001 * 109.52238 * 302.30952 * 11 9 7 27 27 H 1.08993 * 109.52774 * 62.43323 * 11 9 7 28 28 H 1.08999 * 109.50047 * 177.58995 * 12 11 9 29 29 H 1.08993 * 109.50167 * 297.67421 * 12 11 9 30 30 H 1.08997 * 109.46207 * 60.84020 * 13 12 11 31 31 H 1.08998 * 109.45728 * 180.80129 * 13 12 11 32 32 H 1.09010 * 109.47081 * 53.96000 * 15 14 13 33 33 H 1.09008 * 109.47169 * 173.95352 * 15 14 13 34 34 H 1.08999 * 109.46541 * 299.99963 * 16 15 14 35 35 H 1.09000 * 109.46863 * 59.99564 * 16 15 14 36 36 H 1.09000 * 109.51798 * 297.49404 * 19 17 16 37 37 H 1.08991 * 109.52366 * 57.68533 * 19 17 16 38 38 H 1.08997 * 109.53923 * 183.14971 * 20 19 17 39 39 H 1.09006 * 109.61276 * 62.93196 * 20 19 17 40 40 H 1.09005 * 109.51966 * 297.07861 * 21 20 19 41 41 H 1.08998 * 109.57508 * 176.92102 * 21 20 19 42 42 H 1.08999 * 109.48625 * 182.41312 * 22 21 20 43 43 H 1.09002 * 109.48331 * 62.37143 * 22 21 20 44 44 H 1.09000 * 109.46378 * 178.24048 * 24 14 13 45 45 H 1.08998 * 109.46644 * 58.26885 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.5004 -2.1088 0.2742 9 6 3.4615 -1.2228 -0.3844 10 1 4.0152 -0.5180 0.2359 11 6 3.6098 -0.8329 -1.8577 12 6 5.0858 -0.9228 -2.2553 13 6 5.5941 -2.3424 -1.9932 14 7 5.4313 -2.6671 -0.5705 15 6 6.0347 -3.9688 -0.2552 16 6 5.2610 -5.0769 -0.9724 17 6 5.8899 -6.4325 -0.6445 18 1 5.9314 -6.5619 0.4370 19 6 5.0441 -7.5501 -1.2606 20 6 5.7123 -8.8995 -0.9794 21 6 7.1392 -8.8761 -1.5360 22 6 7.9040 -7.7074 -0.9094 23 8 7.2128 -6.4866 -1.1821 24 6 4.0169 -2.6336 -0.1767 25 1 -0.4849 -0.8364 -0.0777 26 1 3.0241 -1.5138 -2.4753 27 1 3.2542 0.1871 -2.0022 28 1 5.1923 -0.6878 -3.3143 29 1 5.6655 -0.2134 -1.6649 30 1 5.0230 -3.0494 -2.5948 31 1 6.6485 -2.4059 -2.2619 32 1 7.0731 -3.9777 -0.5867 33 1 5.9955 -4.1363 0.8212 34 1 4.2226 -5.0679 -0.6409 35 1 5.3002 -4.9093 -2.0487 36 1 4.0476 -7.5381 -0.8192 37 1 4.9686 -7.3984 -2.3372 38 1 5.1453 -9.6949 -1.4630 39 1 5.7432 -9.0756 0.0959 40 1 7.1059 -8.7511 -2.6184 41 1 7.6415 -9.8124 -1.2928 42 1 8.9068 -7.6598 -1.3338 43 1 7.9718 -7.8536 0.1687 44 1 3.9259 -2.9087 0.8741 45 1 3.4532 -3.3393 -0.7868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260125265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:44 Heat of formation + Delta-G solvation = -71.957739 kcal Electronic energy + Delta-G solvation = -21383.216791 eV Core-core repulsion = 18399.225884 eV Total energy + Delta-G solvation = -2983.990907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71339 -38.44094 -34.61111 -33.79429 -32.76202 -31.58945 -30.11742 -28.39035 -25.29867 -24.54351 -24.01434 -22.48762 -21.33452 -20.59314 -20.32860 -18.42142 -17.43871 -16.53779 -16.23069 -15.23179 -14.88517 -14.69674 -14.52740 -14.06634 -13.88825 -13.53197 -13.30340 -13.05893 -12.89255 -12.45251 -12.34231 -12.07660 -11.85734 -11.69329 -11.35540 -11.34751 -11.20112 -10.85058 -10.73927 -10.55285 -10.45078 -10.21808 -9.97011 -9.71468 -9.61724 -9.52169 -9.19827 -8.66045 -8.18425 -7.66674 -6.37712 -3.99786 3.49176 3.51366 3.65662 3.67787 4.43165 4.56594 4.58177 4.59044 4.64771 4.74998 4.99464 5.15121 5.20502 5.32169 5.35955 5.37565 5.46010 5.56016 5.59015 5.60839 5.67756 5.75952 5.79840 5.82674 5.92890 5.95212 6.03157 6.08211 6.20255 6.27796 6.36916 6.42648 6.49767 6.60746 6.75192 6.94284 7.01130 7.14492 7.38694 7.56389 7.72857 7.76219 8.28516 8.43829 8.96295 9.67745 11.00170 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034534 B = 0.004082 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.602785 B = 6857.287260 C = 7309.307972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.033 3.967 3 Si 1.042 2.958 4 H -0.287 1.287 5 H -0.268 1.268 6 H -0.290 1.290 7 C -0.598 4.598 8 H 0.053 0.947 9 C 0.026 3.974 10 H 0.030 0.970 11 C -0.117 4.117 12 C -0.121 4.121 13 C 0.062 3.938 14 N -0.540 5.540 15 C 0.061 3.939 16 C -0.151 4.151 17 C 0.096 3.904 18 H 0.057 0.943 19 C -0.152 4.152 20 C -0.123 4.123 21 C -0.156 4.156 22 C 0.061 3.939 23 O -0.376 6.376 24 C 0.074 3.926 25 H 0.266 0.734 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.838 -15.285 -3.204 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.871 3.129 4 H -0.214 1.214 5 H -0.193 1.193 6 H -0.216 1.216 7 C -0.636 4.636 8 H 0.071 0.929 9 C 0.007 3.993 10 H 0.048 0.952 11 C -0.155 4.155 12 C -0.159 4.159 13 C -0.066 4.066 14 N -0.263 5.263 15 C -0.068 4.068 16 C -0.190 4.190 17 C 0.038 3.962 18 H 0.075 0.925 19 C -0.190 4.190 20 C -0.160 4.160 21 C -0.194 4.194 22 C -0.016 4.016 23 O -0.295 6.295 24 C -0.053 4.053 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 14.956 -13.112 -2.965 20.109 hybrid contribution -0.505 -2.745 -0.427 2.823 sum 14.451 -15.857 -3.392 21.720 Atomic orbital electron populations 1.70817 1.07220 1.30335 1.46115 1.25744 0.96019 1.02466 0.92934 0.84119 0.76017 0.75629 0.77183 1.21433 1.19305 1.21581 1.21978 0.94475 0.96209 1.50920 0.92923 1.19040 0.96401 0.91916 0.91991 0.95239 1.22025 0.92758 1.00889 0.99803 1.21681 0.98770 0.95966 0.99439 1.21985 0.99360 0.96782 0.88432 1.62245 1.18147 1.27764 1.18134 1.22140 0.98402 0.86697 0.99556 1.22342 1.00480 0.93715 1.02496 1.22077 0.82426 0.95091 0.96579 0.92489 1.22228 0.99630 0.94848 1.02246 1.21587 0.95856 0.97513 1.01052 1.22191 0.96550 0.99136 1.01540 1.22524 0.95652 0.84376 0.99078 1.87963 1.27278 1.36363 1.77902 1.22135 0.84758 0.99473 0.98951 0.92376 0.93512 0.92723 0.93071 0.91939 0.95463 0.92052 0.90733 0.91396 0.90063 0.91118 0.90827 0.91112 0.91624 0.91895 0.91155 0.91149 0.89105 0.93402 0.92044 0.95729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.27 13.70 55.43 0.76 -27.51 16 2 C 0.03 0.95 5.35 -17.82 -0.10 0.86 16 3 Si 1.04 25.62 26.31 -169.99 -4.47 21.15 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.27 -6.08 5.50 56.52 0.31 -5.77 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.60 -16.89 8.83 -34.44 -0.30 -17.19 16 8 H 0.05 1.59 7.99 -52.49 -0.42 1.17 16 9 C 0.03 0.63 1.81 -91.69 -0.17 0.46 16 10 H 0.03 0.74 6.71 -51.93 -0.35 0.39 16 11 C -0.12 -2.59 4.71 -26.60 -0.13 -2.72 16 12 C -0.12 -2.22 6.09 -26.65 -0.16 -2.38 16 13 C 0.06 1.07 5.05 -3.84 -0.02 1.05 16 14 N -0.54 -9.80 4.86 -234.67 -1.14 -10.94 16 15 C 0.06 0.91 5.25 -3.83 -0.02 0.89 16 16 C -0.15 -2.10 4.22 -26.74 -0.11 -2.21 16 17 C 0.10 1.14 2.64 -26.68 -0.07 1.07 16 18 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 19 C -0.15 -1.59 5.42 -26.59 -0.14 -1.73 16 20 C -0.12 -1.06 6.03 -26.55 -0.16 -1.22 16 21 C -0.16 -1.27 6.14 -26.60 -0.16 -1.44 16 22 C 0.06 0.56 6.84 37.20 0.25 0.81 16 23 O -0.38 -4.63 9.94 -35.23 -0.35 -4.98 16 24 C 0.07 1.54 4.06 -3.83 -0.02 1.53 16 25 H 0.27 8.23 8.73 -40.82 -0.36 7.87 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.26 5.09 -51.93 -0.26 0.99 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.03 0.47 6.75 -51.93 -0.35 0.12 16 31 H 0.06 0.94 8.06 -51.93 -0.42 0.53 16 32 H 0.07 1.10 7.74 -51.92 -0.40 0.70 16 33 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.08 1.20 6.51 -51.93 -0.34 0.86 16 35 H 0.07 1.04 6.68 -51.93 -0.35 0.69 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.30 8.12 -51.93 -0.42 0.87 16 45 H 0.02 0.52 6.61 -51.93 -0.34 0.18 16 LS Contribution 331.80 15.07 5.00 5.00 Total: -1.00 -30.26 331.80 -9.90 -40.16 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.39 Total: -0.66 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -1.30 Total: -22.22 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.38 Total: -38.45 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.35 Total: -4.98 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -4.47 Total: 21.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.26 -9.90 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.796 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds