Wall clock time and date at job start Mon Mar 30 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48506 * 109.46875 * 89.99905 * 3 2 1 5 5 H 1.48496 * 109.47069 * 209.99731 * 3 2 1 6 6 H 1.48501 * 109.47275 * 330.00009 * 3 2 1 7 7 C 1.37878 * 119.99690 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00413 * 342.88912 * 7 2 1 9 9 C 1.50698 * 119.99716 * 162.89746 * 7 2 1 10 10 H 1.08997 * 109.50565 * 54.57882 * 9 7 2 11 11 C 1.53121 * 109.50296 * 294.50619 * 9 7 2 12 12 C 1.53124 * 109.16207 * 182.40627 * 11 9 7 13 13 C 1.53042 * 109.27506 * 57.65085 * 12 11 9 14 14 N 1.46837 * 109.52414 * 300.81902 * 13 12 11 15 15 C 1.46898 * 110.99901 * 185.83864 * 14 13 12 16 16 C 1.52998 * 109.47776 * 293.95813 * 15 14 13 17 17 C 1.52993 * 109.47384 * 179.97438 * 16 15 14 18 18 H 1.09003 * 109.48043 * 55.02406 * 17 16 15 19 19 C 1.53099 * 109.47977 * 175.05808 * 17 16 15 20 20 C 1.53181 * 109.16238 * 177.59070 * 19 17 16 21 21 C 1.53173 * 109.03791 * 303.01932 * 20 19 17 22 22 C 1.53089 * 109.16538 * 56.97991 * 21 20 19 23 23 O 1.42903 * 109.48225 * 294.99674 * 17 16 15 24 24 C 1.46850 * 111.19782 * 61.74963 * 14 13 12 25 25 H 0.96994 * 119.99754 * 174.69553 * 1 2 3 26 26 H 1.09001 * 109.52238 * 302.30952 * 11 9 7 27 27 H 1.08993 * 109.52774 * 62.43323 * 11 9 7 28 28 H 1.08999 * 109.50047 * 177.58995 * 12 11 9 29 29 H 1.08993 * 109.50167 * 297.67421 * 12 11 9 30 30 H 1.08997 * 109.46207 * 60.84020 * 13 12 11 31 31 H 1.08998 * 109.45728 * 180.80129 * 13 12 11 32 32 H 1.09010 * 109.47081 * 53.96000 * 15 14 13 33 33 H 1.09008 * 109.47169 * 173.95352 * 15 14 13 34 34 H 1.08999 * 109.46541 * 299.99963 * 16 15 14 35 35 H 1.09000 * 109.46863 * 59.99564 * 16 15 14 36 36 H 1.09000 * 109.51798 * 297.49404 * 19 17 16 37 37 H 1.08991 * 109.52366 * 57.68533 * 19 17 16 38 38 H 1.08997 * 109.53923 * 183.14971 * 20 19 17 39 39 H 1.09006 * 109.61276 * 62.93196 * 20 19 17 40 40 H 1.09005 * 109.51966 * 297.07861 * 21 20 19 41 41 H 1.08998 * 109.57508 * 176.92102 * 21 20 19 42 42 H 1.08999 * 109.48625 * 182.41312 * 22 21 20 43 43 H 1.09002 * 109.48331 * 62.37143 * 22 21 20 44 44 H 1.09000 * 109.46378 * 178.24048 * 24 14 13 45 45 H 1.08998 * 109.46644 * 58.26885 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4467 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.5004 -2.1088 0.2742 9 6 3.4615 -1.2228 -0.3844 10 1 4.0152 -0.5180 0.2359 11 6 3.6098 -0.8329 -1.8577 12 6 5.0858 -0.9228 -2.2553 13 6 5.5941 -2.3424 -1.9932 14 7 5.4313 -2.6671 -0.5705 15 6 6.0347 -3.9688 -0.2552 16 6 5.2610 -5.0769 -0.9724 17 6 5.8899 -6.4325 -0.6445 18 1 5.9314 -6.5619 0.4370 19 6 5.0441 -7.5501 -1.2606 20 6 5.7123 -8.8995 -0.9794 21 6 7.1392 -8.8761 -1.5360 22 6 7.9040 -7.7074 -0.9094 23 8 7.2128 -6.4866 -1.1821 24 6 4.0169 -2.6336 -0.1767 25 1 -0.4849 -0.8364 -0.0777 26 1 3.0241 -1.5138 -2.4753 27 1 3.2542 0.1871 -2.0022 28 1 5.1923 -0.6878 -3.3143 29 1 5.6655 -0.2134 -1.6649 30 1 5.0230 -3.0494 -2.5948 31 1 6.6485 -2.4059 -2.2619 32 1 7.0731 -3.9777 -0.5867 33 1 5.9955 -4.1363 0.8212 34 1 4.2226 -5.0679 -0.6409 35 1 5.3002 -4.9093 -2.0487 36 1 4.0476 -7.5381 -0.8192 37 1 4.9686 -7.3984 -2.3372 38 1 5.1453 -9.6949 -1.4630 39 1 5.7432 -9.0756 0.0959 40 1 7.1059 -8.7511 -2.6184 41 1 7.6415 -9.8124 -1.2928 42 1 8.9068 -7.6598 -1.3338 43 1 7.9718 -7.8536 0.1687 44 1 3.9259 -2.9087 0.8741 45 1 3.4532 -3.3393 -0.7868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260125265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:43 Heat of formation + Delta-G solvation = -91.142037 kcal Electronic energy + Delta-G solvation = -21384.048684 eV Core-core repulsion = 18399.225884 eV Total energy + Delta-G solvation = -2984.822800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.69919 -39.82160 -36.18420 -34.57885 -34.51775 -32.89896 -31.89572 -29.48019 -26.61358 -26.32819 -24.98704 -23.60389 -22.84132 -22.12570 -21.16199 -20.05220 -19.62092 -17.42961 -17.15228 -16.62607 -16.13289 -15.76515 -15.68809 -15.41867 -15.17436 -14.97584 -14.81958 -14.47837 -14.10821 -13.84772 -13.71604 -13.58298 -13.03234 -12.98043 -12.84698 -12.54722 -12.26935 -12.18630 -12.04126 -11.77808 -11.67924 -11.62631 -11.47892 -11.39374 -11.18626 -10.97657 -10.70242 -10.41885 -10.39138 -9.11170 -8.71177 -6.33633 1.50374 1.54707 1.75186 2.52727 2.81552 3.07337 3.11306 3.63865 3.85829 3.90897 3.99700 4.04091 4.11205 4.16303 4.23981 4.29721 4.34181 4.44032 4.51205 4.54595 4.62464 4.70069 4.70488 4.79442 4.83234 4.86500 4.91404 4.98344 4.99494 5.04221 5.06656 5.10824 5.16014 5.23761 5.27238 5.32041 5.35656 5.53166 5.78226 5.95121 6.07265 6.28592 6.32018 6.36143 6.61412 7.42487 8.65637 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.034534 B = 0.004082 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.602785 B = 6857.287260 C = 7309.307972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.018 4.018 3 Si 1.083 2.917 4 H -0.276 1.276 5 H -0.236 1.236 6 H -0.289 1.289 7 C -0.600 4.600 8 H 0.015 0.985 9 C 0.022 3.978 10 H 0.027 0.973 11 C -0.116 4.116 12 C -0.115 4.115 13 C 0.062 3.938 14 N -0.545 5.545 15 C 0.065 3.935 16 C -0.144 4.144 17 C 0.101 3.899 18 H 0.062 0.938 19 C -0.152 4.152 20 C -0.122 4.122 21 C -0.153 4.153 22 C 0.053 3.947 23 O -0.395 6.395 24 C 0.087 3.913 25 H 0.251 0.749 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.025 0.975 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.845 -15.702 -3.767 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.216 4.216 3 Si 0.904 3.096 4 H -0.202 1.202 5 H -0.160 1.160 6 H -0.215 1.215 7 C -0.638 4.638 8 H 0.033 0.967 9 C 0.003 3.997 10 H 0.045 0.955 11 C -0.154 4.154 12 C -0.152 4.152 13 C -0.065 4.065 14 N -0.268 5.268 15 C -0.063 4.063 16 C -0.183 4.183 17 C 0.043 3.957 18 H 0.079 0.921 19 C -0.190 4.190 20 C -0.159 4.159 21 C -0.191 4.191 22 C -0.023 4.023 23 O -0.315 6.315 24 C -0.041 4.041 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 17.986 -13.567 -3.531 22.804 hybrid contribution -1.454 -2.730 -0.233 3.101 sum 16.532 -16.296 -3.764 23.517 Atomic orbital electron populations 1.70944 1.08472 1.29463 1.49033 1.27169 0.95974 1.06285 0.92138 0.83636 0.76187 0.71592 0.78190 1.20215 1.15995 1.21513 1.22229 0.96875 0.94705 1.50018 0.96685 1.19009 0.93474 0.93880 0.93334 0.95493 1.21905 0.95758 0.99838 0.97874 1.21646 0.95430 0.96904 1.01252 1.22050 1.00916 0.95934 0.87629 1.62199 1.15718 1.29824 1.19060 1.22158 0.98687 0.85552 0.99926 1.22201 0.99615 0.94843 1.01625 1.21950 0.82765 0.94124 0.96854 0.92057 1.22210 0.99568 0.95712 1.01500 1.21603 0.96233 0.96422 1.01657 1.22175 0.96150 0.99731 1.01002 1.22760 0.96092 0.83564 0.99900 1.87917 1.27221 1.38179 1.78174 1.21807 0.86712 0.97196 0.98362 0.93993 0.94889 0.93583 0.90249 0.91565 0.95655 0.89305 0.89547 0.91115 0.91670 0.91927 0.91089 0.92005 0.90698 0.91244 0.91775 0.89030 0.87699 0.92580 0.92926 0.96805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.44 13.70 21.45 0.29 -60.14 16 2 C -0.02 -1.08 5.35 84.65 0.45 -0.63 16 3 Si 1.08 51.29 26.31 68.60 1.80 53.09 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.24 -9.93 5.50 99.48 0.55 -9.38 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.60 -34.92 8.83 25.60 0.23 -34.70 16 8 H 0.01 0.95 7.99 -2.91 -0.02 0.93 16 9 C 0.02 1.08 1.81 -11.49 -0.02 1.06 16 10 H 0.03 1.31 6.71 -2.39 -0.02 1.30 16 11 C -0.12 -5.00 4.71 30.68 0.14 -4.86 16 12 C -0.11 -3.87 6.09 30.65 0.19 -3.68 16 13 C 0.06 1.97 5.05 86.33 0.44 2.40 16 14 N -0.55 -18.82 4.86 -896.36 -4.35 -23.18 16 15 C 0.06 1.84 5.25 86.30 0.45 2.29 16 16 C -0.14 -3.88 4.22 30.59 0.13 -3.75 16 17 C 0.10 2.27 2.64 30.63 0.08 2.35 16 18 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 19 C -0.15 -3.04 5.42 30.69 0.17 -2.87 16 20 C -0.12 -1.86 6.03 30.71 0.19 -1.68 16 21 C -0.15 -2.11 6.14 30.68 0.19 -1.92 16 22 C 0.05 0.84 6.84 72.01 0.49 1.33 16 23 O -0.40 -8.95 9.94 -148.98 -1.48 -10.43 16 24 C 0.09 3.64 4.06 86.33 0.35 3.99 16 25 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 2.04 5.09 -2.39 -0.01 2.03 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 30 H 0.03 0.82 6.75 -2.39 -0.02 0.80 16 31 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 32 H 0.09 2.30 7.74 -2.38 -0.02 2.29 16 33 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.06 1.95 6.51 -2.39 -0.02 1.94 16 35 H 0.06 1.78 6.68 -2.39 -0.02 1.77 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 39 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.05 2.25 8.12 -2.39 -0.02 2.23 16 45 H 0.01 0.60 6.61 -2.39 -0.02 0.59 16 Total: -1.00 -66.41 331.80 0.46 -65.95 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.73 Total: 15.36 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 3.47 Total: -40.65 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -4.06 Total: -83.32 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -1.48 Total: -10.43 kcal Atomic # 14 Polarization: 51.29 SS G_CDS: 1.80 Total: 53.09 kcal Total: -66.41 0.46 -65.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260125265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.192 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds