Wall clock time and date at job start Mon Mar 30 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48501 * 109.47121 * 239.99978 * 3 2 1 5 5 H 1.48501 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47275 * 119.99952 * 3 2 1 7 7 C 1.37873 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00300 * 165.70162 * 7 2 1 9 9 C 1.50700 * 119.99985 * 345.70062 * 7 2 1 10 10 C 1.52996 * 115.55013 * 324.80108 * 9 7 2 11 11 N 1.46893 * 109.47111 * 306.27041 * 10 9 7 12 12 C 1.46906 * 111.00135 * 182.89395 * 11 10 9 13 13 C 1.52995 * 109.47135 * 185.63154 * 12 11 10 14 14 H 1.09003 * 109.47076 * 57.95775 * 13 12 11 15 15 C 1.53003 * 109.47280 * 297.95371 * 13 12 11 16 16 C 1.52991 * 109.47261 * 300.00059 * 15 13 12 17 17 C 1.52995 * 109.47392 * 300.00124 * 16 15 13 18 18 C 1.52995 * 109.47539 * 60.00007 * 17 16 15 19 19 H 1.09001 * 109.47144 * 59.99926 * 18 17 16 20 20 C 1.52998 * 109.47841 * 180.02562 * 18 17 16 21 21 O 1.42900 * 109.47075 * 295.00155 * 20 18 17 22 22 C 1.53002 * 109.47027 * 177.95716 * 13 12 11 23 23 C 1.53006 * 117.49701 * 110.47081 * 9 7 2 24 24 C 1.53005 * 117.49951 * 179.12699 * 9 7 2 25 25 H 0.97007 * 119.99885 * 5.03782 * 1 2 3 26 26 H 1.09007 * 109.46899 * 186.27032 * 10 9 7 27 27 H 1.09001 * 109.47342 * 66.27586 * 10 9 7 28 28 H 1.00899 * 111.00405 * 306.84462 * 11 10 9 29 29 H 1.08998 * 109.46854 * 65.63304 * 12 11 10 30 30 H 1.08995 * 109.46862 * 305.63547 * 12 11 10 31 31 H 1.09002 * 109.46673 * 180.02562 * 15 13 12 32 32 H 1.09003 * 109.46579 * 60.00381 * 15 13 12 33 33 H 1.09002 * 109.47287 * 60.00365 * 16 15 13 34 34 H 1.09007 * 109.47205 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.47203 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.46963 * 299.99822 * 17 16 15 37 37 H 1.09008 * 109.46945 * 54.99545 * 20 18 17 38 38 H 1.08994 * 109.47683 * 174.99794 * 20 18 17 39 39 H 0.96698 * 114.00080 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.47232 * 180.02562 * 22 13 12 41 41 H 1.08998 * 109.47128 * 300.00101 * 22 13 12 42 42 H 1.08999 * 117.49902 * 215.00656 * 23 9 7 43 43 H 1.08996 * 117.49901 * 0.02562 * 23 9 7 44 44 H 1.08996 * 117.49609 * 359.97438 * 24 9 7 45 45 H 1.08997 * 117.49792 * 144.97547 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0594 -1.2086 -0.2304 9 6 1.2860 -2.4787 0.3235 10 6 0.1799 -2.3699 1.3749 11 7 0.7196 -1.7468 2.5907 12 6 -0.2981 -1.6881 3.6484 13 6 0.2540 -0.9104 4.8447 14 1 0.5460 0.0898 4.5244 15 6 1.4736 -1.6416 5.4095 16 6 1.0636 -3.0453 5.8591 17 6 -0.0139 -2.9403 6.9402 18 6 -1.2335 -2.2092 6.3755 19 1 -1.6268 -2.7633 5.5232 20 6 -2.3108 -2.1036 7.4568 21 8 -2.7768 -3.4117 7.7942 22 6 -0.8235 -0.8054 5.9259 23 6 1.0820 -3.4796 -0.8157 24 6 2.1018 -3.7727 0.2875 25 1 -0.4850 0.8369 -0.0738 26 1 -0.1947 -3.3657 1.6124 27 1 -0.6340 -1.7592 0.9841 28 1 1.5450 -2.2316 2.9097 29 1 -0.5564 -2.6999 3.9607 30 1 -1.1883 -1.1867 3.2686 31 1 1.8665 -1.0876 6.2621 32 1 2.2412 -1.7163 4.6392 33 1 0.6703 -3.5994 5.0068 34 1 1.9326 -3.5664 6.2610 35 1 -0.3056 -3.9404 7.2608 36 1 0.3795 -2.3862 7.7925 37 1 -1.8906 -1.6279 8.3430 38 1 -3.1428 -1.5065 7.0838 39 1 -3.4627 -3.4212 8.4757 40 1 -0.4303 -0.2509 6.7781 41 1 -1.6924 -0.2845 5.5236 42 1 0.1597 -4.0605 -0.8161 43 1 1.4678 -3.2090 -1.7986 44 1 3.1580 -3.6947 0.0299 45 1 1.8507 -4.5462 1.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310266520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:45 Heat of formation + Delta-G solvation = -47.342641 kcal Electronic energy + Delta-G solvation = -21576.177937 eV Core-core repulsion = 18593.254421 eV Total energy + Delta-G solvation = -2982.923516 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.42012 -37.02515 -36.46293 -33.76410 -31.93051 -31.32705 -30.62422 -26.03697 -25.58022 -25.06572 -22.66153 -22.11166 -21.05062 -20.88122 -18.92495 -18.32454 -17.29298 -16.12834 -15.63888 -15.18572 -14.81058 -14.47946 -14.14881 -14.07553 -13.57428 -13.38158 -13.03442 -12.71558 -12.59385 -12.15155 -11.91985 -11.68756 -11.52889 -11.21993 -11.05165 -10.88423 -10.79535 -10.63018 -10.50201 -10.38220 -10.12537 -10.09229 -9.98184 -9.76499 -9.68381 -9.11689 -8.94501 -8.55767 -7.87286 -7.12007 -5.83901 -3.83506 3.41540 3.45838 3.51075 4.11091 4.54503 4.72411 4.82625 4.95911 5.08561 5.20228 5.26121 5.36888 5.45856 5.53796 5.59214 5.68162 5.71143 5.71909 5.78679 5.85241 6.00550 6.06957 6.20021 6.21606 6.26606 6.32798 6.35310 6.45451 6.54444 6.60149 6.67968 6.68405 6.76223 6.80521 6.88870 7.02820 7.23519 7.41423 7.48642 7.72410 8.12571 8.31864 8.50196 8.71656 9.08846 9.75575 11.19384 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.005197 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.202699 B = 5386.077451 C = 5913.291811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.095 3.905 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.484 4.484 8 H 0.053 0.947 9 C 0.064 3.936 10 C 0.107 3.893 11 N -0.654 5.654 12 C 0.067 3.933 13 C -0.081 4.081 14 H 0.079 0.921 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.105 4.105 18 C -0.090 4.090 19 H 0.081 0.919 20 C 0.079 3.921 21 O -0.573 6.573 22 C -0.105 4.105 23 C -0.207 4.207 24 C -0.220 4.220 25 H 0.257 0.743 26 H -0.022 1.022 27 H 0.109 0.891 28 H 0.324 0.676 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.374 0.626 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 -3.057 15.073 15.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.109 4.109 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.063 3.937 10 C -0.021 4.021 11 N -0.284 5.284 12 C -0.063 4.063 13 C -0.100 4.100 14 H 0.098 0.902 15 C -0.152 4.152 16 C -0.160 4.160 17 C -0.142 4.142 18 C -0.108 4.108 19 H 0.099 0.901 20 C 0.002 3.998 21 O -0.378 6.378 22 C -0.143 4.143 23 C -0.245 4.245 24 C -0.257 4.257 25 H 0.067 0.933 26 H -0.004 1.004 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.221 0.779 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.645 -2.436 14.458 15.108 hybrid contribution 0.003 0.050 0.622 0.624 sum -3.642 -2.385 15.080 15.696 Atomic orbital electron populations 1.69820 1.06138 1.26269 1.48378 1.24701 0.94405 0.98348 0.93436 0.86745 0.79741 0.83469 0.78308 1.20942 1.21660 1.20144 1.20202 0.94565 0.89495 1.47867 0.92915 1.18995 0.93893 0.88094 0.92729 1.21537 0.98884 0.92984 0.88697 1.60210 1.06078 1.58444 1.03623 1.21960 0.95931 0.97025 0.91400 1.21073 0.94395 1.00459 0.94048 0.90243 1.21553 0.98100 0.95311 1.00268 1.21586 0.98061 0.97642 0.98694 1.21463 0.94767 1.00272 0.97725 1.21208 0.94519 0.97488 0.97590 0.90070 1.22297 0.96352 0.83822 0.97356 1.86508 1.60059 1.29186 1.62016 1.21523 0.99055 0.95208 0.98533 1.22939 0.98385 1.07973 0.95222 1.22931 0.96392 1.03349 1.03075 0.93288 1.00378 0.87360 0.85853 0.96493 0.91887 0.92672 0.91027 0.91790 0.92501 0.91902 0.92683 0.93982 0.93809 0.77946 0.92180 0.91942 0.92098 0.90535 0.90898 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.12 10.93 55.43 0.61 -23.52 16 2 C 0.10 2.59 5.09 -17.82 -0.09 2.50 16 3 Si 0.89 21.49 29.56 -169.99 -5.03 16.47 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.48 -13.26 8.71 -34.44 -0.30 -13.56 16 8 H 0.05 1.46 7.86 -52.49 -0.41 1.05 16 9 C 0.06 1.59 1.98 -155.66 -0.31 1.28 16 10 C 0.11 2.53 4.81 -3.83 -0.02 2.52 16 11 N -0.65 -13.88 5.99 -113.78 -0.68 -14.56 16 12 C 0.07 1.19 4.47 -3.82 -0.02 1.17 16 13 C -0.08 -1.22 2.89 -90.62 -0.26 -1.48 16 14 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 15 C -0.11 -1.60 5.16 -26.73 -0.14 -1.74 16 16 C -0.12 -1.60 5.65 -26.74 -0.15 -1.75 16 17 C -0.10 -1.27 5.10 -26.74 -0.14 -1.41 16 18 C -0.09 -1.10 2.15 -90.62 -0.20 -1.29 16 19 H 0.08 1.15 6.48 -51.93 -0.34 0.82 16 20 C 0.08 0.82 6.43 37.16 0.24 1.06 16 21 O -0.57 -6.13 13.20 -35.23 -0.46 -6.60 16 22 C -0.11 -1.31 4.73 -26.73 -0.13 -1.44 16 23 C -0.21 -4.84 9.96 -26.69 -0.27 -5.11 16 24 C -0.22 -4.90 9.92 -26.69 -0.26 -5.17 16 25 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 26 H -0.02 -0.49 8.08 -51.92 -0.42 -0.91 16 27 H 0.11 2.86 6.11 -51.93 -0.32 2.54 16 28 H 0.32 6.66 7.05 -39.29 -0.28 6.38 16 29 H 0.02 0.30 4.81 -51.93 -0.25 0.05 16 30 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.10 6.74 -51.93 -0.35 0.75 16 33 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.79 7.82 -51.93 -0.41 0.39 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.37 2.20 9.12 45.56 0.42 2.62 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -28.82 342.64 -9.75 -38.57 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.31 Total: 8.89 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -2.04 Total: -24.42 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.08 Total: -38.08 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -0.46 Total: -6.60 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.82 -9.75 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.769 kcal (2) G-P(sol) polarization free energy of solvation -28.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds