Wall clock time and date at job start Mon Mar 30 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48501 * 109.47121 * 239.99978 * 3 2 1 5 5 H 1.48501 * 109.47261 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47275 * 119.99952 * 3 2 1 7 7 C 1.37873 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00300 * 165.70162 * 7 2 1 9 9 C 1.50700 * 119.99985 * 345.70062 * 7 2 1 10 10 C 1.52996 * 115.55013 * 324.80108 * 9 7 2 11 11 N 1.46893 * 109.47111 * 306.27041 * 10 9 7 12 12 C 1.46906 * 111.00135 * 182.89395 * 11 10 9 13 13 C 1.52995 * 109.47135 * 185.63154 * 12 11 10 14 14 H 1.09003 * 109.47076 * 57.95775 * 13 12 11 15 15 C 1.53003 * 109.47280 * 297.95371 * 13 12 11 16 16 C 1.52991 * 109.47261 * 300.00059 * 15 13 12 17 17 C 1.52995 * 109.47392 * 300.00124 * 16 15 13 18 18 C 1.52995 * 109.47539 * 60.00007 * 17 16 15 19 19 H 1.09001 * 109.47144 * 59.99926 * 18 17 16 20 20 C 1.52998 * 109.47841 * 180.02562 * 18 17 16 21 21 O 1.42900 * 109.47075 * 295.00155 * 20 18 17 22 22 C 1.53002 * 109.47027 * 177.95716 * 13 12 11 23 23 C 1.53006 * 117.49701 * 110.47081 * 9 7 2 24 24 C 1.53005 * 117.49951 * 179.12699 * 9 7 2 25 25 H 0.97007 * 119.99885 * 5.03782 * 1 2 3 26 26 H 1.09007 * 109.46899 * 186.27032 * 10 9 7 27 27 H 1.09001 * 109.47342 * 66.27586 * 10 9 7 28 28 H 1.00899 * 111.00405 * 306.84462 * 11 10 9 29 29 H 1.08998 * 109.46854 * 65.63304 * 12 11 10 30 30 H 1.08995 * 109.46862 * 305.63547 * 12 11 10 31 31 H 1.09002 * 109.46673 * 180.02562 * 15 13 12 32 32 H 1.09003 * 109.46579 * 60.00381 * 15 13 12 33 33 H 1.09002 * 109.47287 * 60.00365 * 16 15 13 34 34 H 1.09007 * 109.47205 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.47203 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.46963 * 299.99822 * 17 16 15 37 37 H 1.09008 * 109.46945 * 54.99545 * 20 18 17 38 38 H 1.08994 * 109.47683 * 174.99794 * 20 18 17 39 39 H 0.96698 * 114.00080 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.47232 * 180.02562 * 22 13 12 41 41 H 1.08998 * 109.47128 * 300.00101 * 22 13 12 42 42 H 1.08999 * 117.49902 * 215.00656 * 23 9 7 43 43 H 1.08996 * 117.49901 * 0.02562 * 23 9 7 44 44 H 1.08996 * 117.49609 * 359.97438 * 24 9 7 45 45 H 1.08997 * 117.49792 * 144.97547 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0594 -1.2086 -0.2304 9 6 1.2860 -2.4787 0.3235 10 6 0.1799 -2.3699 1.3749 11 7 0.7196 -1.7468 2.5907 12 6 -0.2981 -1.6881 3.6484 13 6 0.2540 -0.9104 4.8447 14 1 0.5460 0.0898 4.5244 15 6 1.4736 -1.6416 5.4095 16 6 1.0636 -3.0453 5.8591 17 6 -0.0139 -2.9403 6.9402 18 6 -1.2335 -2.2092 6.3755 19 1 -1.6268 -2.7633 5.5232 20 6 -2.3108 -2.1036 7.4568 21 8 -2.7768 -3.4117 7.7942 22 6 -0.8235 -0.8054 5.9259 23 6 1.0820 -3.4796 -0.8157 24 6 2.1018 -3.7727 0.2875 25 1 -0.4850 0.8369 -0.0738 26 1 -0.1947 -3.3657 1.6124 27 1 -0.6340 -1.7592 0.9841 28 1 1.5450 -2.2316 2.9097 29 1 -0.5564 -2.6999 3.9607 30 1 -1.1883 -1.1867 3.2686 31 1 1.8665 -1.0876 6.2621 32 1 2.2412 -1.7163 4.6392 33 1 0.6703 -3.5994 5.0068 34 1 1.9326 -3.5664 6.2610 35 1 -0.3056 -3.9404 7.2608 36 1 0.3795 -2.3862 7.7925 37 1 -1.8906 -1.6279 8.3430 38 1 -3.1428 -1.5065 7.0838 39 1 -3.4627 -3.4212 8.4757 40 1 -0.4303 -0.2509 6.7781 41 1 -1.6924 -0.2845 5.5236 42 1 0.1597 -4.0605 -0.8161 43 1 1.4678 -3.2090 -1.7986 44 1 3.1580 -3.6947 0.0299 45 1 1.8507 -4.5462 1.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310266520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:45 Heat of formation + Delta-G solvation = -65.447504 kcal Electronic energy + Delta-G solvation = -21576.963023 eV Core-core repulsion = 18593.254421 eV Total energy + Delta-G solvation = -2983.708602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53192 -38.68360 -37.51542 -35.24071 -33.99855 -32.35783 -31.86505 -27.79501 -26.96032 -26.48887 -24.25166 -23.19061 -22.87233 -21.89776 -20.84413 -19.53706 -18.24581 -17.92571 -16.84835 -16.55101 -16.23020 -16.12011 -15.44117 -15.41382 -15.03453 -14.82538 -14.48776 -14.09565 -13.75054 -13.44313 -13.27079 -13.22226 -12.93369 -12.75661 -12.69745 -12.41687 -12.32390 -12.20156 -11.96802 -11.91249 -11.83518 -11.30043 -10.98981 -10.97663 -10.87725 -10.87190 -10.70403 -10.48140 -9.87122 -8.80479 -7.90467 -5.96334 1.46402 1.50722 1.56061 2.53127 3.14620 3.35216 3.54795 3.76259 3.79320 3.95505 3.97901 4.14916 4.36220 4.38437 4.41324 4.53466 4.55168 4.57925 4.63830 4.66582 4.72062 4.76134 4.78951 4.84506 4.91115 4.95631 5.00713 5.06135 5.14226 5.17104 5.25378 5.31331 5.34232 5.42846 5.52112 5.54378 5.56771 5.61147 5.70101 6.07771 6.49069 6.62600 6.95167 6.96154 7.01590 7.64486 9.10219 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.005197 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.202699 B = 5386.077451 C = 5913.291811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.940 3.060 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.501 4.501 8 H 0.041 0.959 9 C 0.033 3.967 10 C 0.121 3.879 11 N -0.665 5.665 12 C 0.074 3.926 13 C -0.077 4.077 14 H 0.060 0.940 15 C -0.110 4.110 16 C -0.118 4.118 17 C -0.098 4.098 18 C -0.090 4.090 19 H 0.055 0.945 20 C 0.082 3.918 21 O -0.593 6.593 22 C -0.097 4.097 23 C -0.209 4.209 24 C -0.196 4.196 25 H 0.255 0.745 26 H -0.016 1.016 27 H 0.078 0.922 28 H 0.328 0.672 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.395 0.605 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.488 -3.098 17.056 17.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.008 4.008 11 N -0.295 5.295 12 C -0.056 4.056 13 C -0.096 4.096 14 H 0.078 0.922 15 C -0.147 4.147 16 C -0.156 4.156 17 C -0.136 4.136 18 C -0.109 4.109 19 H 0.073 0.927 20 C 0.005 3.995 21 O -0.402 6.402 22 C -0.135 4.135 23 C -0.247 4.247 24 C -0.233 4.233 25 H 0.065 0.935 26 H 0.002 0.998 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.244 0.756 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.345 -2.484 16.453 16.972 hybrid contribution -0.102 0.013 -0.015 0.104 sum -3.448 -2.471 16.438 16.976 Atomic orbital electron populations 1.69951 1.07015 1.26559 1.49031 1.25239 0.95026 1.00732 0.93317 0.85929 0.78676 0.80446 0.78187 1.20622 1.21412 1.20075 1.20387 0.94179 0.91019 1.48245 0.94069 1.19122 0.95302 0.88335 0.94024 1.21230 0.97596 0.92637 0.89375 1.60140 1.07029 1.58349 1.03955 1.21934 0.94519 0.97633 0.91470 1.21010 0.95890 0.98903 0.93796 0.92195 1.21501 0.96901 0.96024 1.00315 1.21542 0.98889 0.96761 0.98402 1.21411 0.94202 1.00276 0.97695 1.21162 0.95405 0.96739 0.97550 0.92662 1.22231 0.96005 0.83936 0.97358 1.86449 1.61110 1.29449 1.63145 1.21449 0.98098 0.95807 0.98188 1.22928 0.99396 1.07599 0.94797 1.22906 0.96139 1.01941 1.02339 0.93537 0.99845 0.90425 0.85438 0.95800 0.93980 0.90753 0.92846 0.93789 0.91245 0.92336 0.91011 0.92033 0.93173 0.75568 0.89990 0.92037 0.90968 0.91347 0.90616 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.11 10.93 21.45 0.23 -49.87 16 2 C 0.06 3.23 5.09 84.65 0.43 3.66 16 3 Si 0.94 44.31 29.56 68.60 2.03 46.34 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.50 -27.67 8.71 25.60 0.22 -27.44 16 8 H 0.04 2.31 7.86 -2.91 -0.02 2.28 16 9 C 0.03 1.64 1.98 -52.93 -0.10 1.54 16 10 C 0.12 5.77 4.81 86.30 0.41 6.19 16 11 N -0.66 -28.59 5.99 -513.90 -3.08 -31.67 16 12 C 0.07 2.66 4.47 86.30 0.39 3.05 16 13 C -0.08 -2.28 2.89 -10.79 -0.03 -2.31 16 14 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 15 C -0.11 -2.91 5.16 30.59 0.16 -2.76 16 16 C -0.12 -2.91 5.65 30.59 0.17 -2.73 16 17 C -0.10 -2.16 5.10 30.59 0.16 -2.00 16 18 C -0.09 -2.05 2.15 -10.79 -0.02 -2.08 16 19 H 0.05 1.55 6.48 -2.39 -0.02 1.53 16 20 C 0.08 1.49 6.43 71.98 0.46 1.95 16 21 O -0.59 -11.40 13.20 -148.98 -1.97 -13.37 16 22 C -0.10 -2.26 4.73 30.60 0.14 -2.12 16 23 C -0.21 -9.69 9.96 30.62 0.30 -9.39 16 24 C -0.20 -8.50 9.92 30.62 0.30 -8.20 16 25 H 0.26 13.95 8.32 -92.70 -0.77 13.18 16 26 H -0.02 -0.74 8.08 -2.38 -0.02 -0.76 16 27 H 0.08 4.22 6.11 -2.39 -0.01 4.20 16 28 H 0.33 13.55 7.05 -89.69 -0.63 12.92 16 29 H 0.02 0.84 4.81 -2.39 -0.01 0.83 16 30 H 0.04 1.67 8.12 -2.39 -0.02 1.65 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 1.61 6.74 -2.39 -0.02 1.59 16 33 H 0.04 1.25 6.38 -2.39 -0.02 1.23 16 34 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.06 1.35 7.82 -2.39 -0.02 1.34 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.39 3.69 9.12 -74.06 -0.68 3.02 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 3.14 8.14 -2.39 -0.02 3.13 16 43 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -61.24 342.64 -0.13 -61.37 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.34 Total: 29.84 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 3.00 Total: -42.64 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.84 Total: -81.54 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.97 Total: -13.37 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.24 -0.13 -61.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.079 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds