Wall clock time and date at job start Mon Mar 30 2020 06:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99682 * 2 1 4 4 H 1.48501 * 109.46974 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46889 * 299.99543 * 3 2 1 6 6 H 1.48497 * 109.47064 * 59.99350 * 3 2 1 7 7 C 1.37871 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00409 * 187.13964 * 7 2 1 9 9 C 1.50706 * 119.99866 * 7.14739 * 7 2 1 10 10 C 1.53005 * 115.54652 * 275.24345 * 9 7 2 11 11 N 1.46898 * 109.47130 * 294.91878 * 10 9 7 12 12 C 1.46895 * 111.00090 * 174.69868 * 11 10 9 13 13 C 1.53003 * 109.47238 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.46757 * 55.00356 * 13 12 11 15 15 C 1.52992 * 109.47369 * 295.00307 * 13 12 11 16 16 C 1.52995 * 109.47462 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46989 * 60.00038 * 16 15 13 18 18 C 1.53002 * 109.46994 * 300.00244 * 17 16 15 19 19 H 1.08996 * 109.47230 * 299.99494 * 18 17 16 20 20 C 1.53006 * 109.46872 * 180.02562 * 18 17 16 21 21 O 1.42898 * 109.47432 * 65.00271 * 20 18 17 22 22 C 1.52995 * 109.47452 * 60.00040 * 18 17 16 23 23 C 1.52994 * 117.50137 * 129.56964 * 9 7 2 24 24 C 1.53001 * 117.49870 * 60.91001 * 9 7 2 25 25 H 0.97001 * 120.00154 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47355 * 54.92132 * 10 9 7 27 27 H 1.09005 * 109.46489 * 174.92082 * 10 9 7 28 28 H 1.00897 * 111.00148 * 298.65664 * 11 10 9 29 29 H 1.08995 * 109.47220 * 300.00586 * 12 11 10 30 30 H 1.09006 * 109.46547 * 60.00325 * 12 11 10 31 31 H 1.08996 * 109.47225 * 300.00320 * 15 13 12 32 32 H 1.09009 * 109.47156 * 59.99897 * 15 13 12 33 33 H 1.09007 * 109.47032 * 300.00051 * 16 15 13 34 34 H 1.08994 * 109.47749 * 180.02562 * 16 15 13 35 35 H 1.09005 * 109.47547 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.47174 * 60.00323 * 17 16 15 37 37 H 1.09005 * 109.46854 * 185.00313 * 20 18 17 38 38 H 1.09003 * 109.46946 * 304.99528 * 20 18 17 39 39 H 0.96696 * 113.99739 * 180.02562 * 21 20 18 40 40 H 1.08994 * 109.47749 * 179.97438 * 22 18 17 41 41 H 1.09007 * 109.47032 * 59.99950 * 22 18 17 42 42 H 1.08996 * 117.49846 * 0.02562 * 23 9 7 43 43 H 1.08999 * 117.49853 * 145.01865 * 23 9 7 44 44 H 1.09005 * 117.49951 * 214.98459 * 24 9 7 45 45 H 1.08997 * 117.49925 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0783 -1.1975 0.1168 9 6 1.2600 -2.4941 -0.1613 10 6 0.6770 -3.0850 1.1240 11 7 1.7704 -3.4586 2.0311 12 6 1.2477 -3.9134 3.3264 13 6 2.4134 -4.2935 4.2418 14 1 3.1015 -3.4520 4.3220 15 6 3.1493 -5.5001 3.6561 16 6 4.3153 -5.8797 4.5710 17 6 3.7795 -6.2340 5.9596 18 6 3.0434 -5.0273 6.5453 19 1 3.7315 -4.1857 6.6253 20 6 2.5081 -5.3814 7.9343 21 8 3.6035 -5.6224 8.8198 22 6 1.8775 -4.6476 5.6304 23 6 1.7694 -3.4729 -1.2211 24 6 0.4695 -2.6992 -1.4551 25 1 -0.4850 0.8400 -0.0004 26 1 0.0403 -2.3446 1.6081 27 1 0.0871 -3.9693 0.8824 28 1 2.3627 -4.1606 1.6136 29 1 0.6701 -3.1119 3.7868 30 1 0.6071 -4.7822 3.1748 31 1 2.4612 -6.3415 3.5757 32 1 3.5315 -5.2476 2.6669 33 1 5.0034 -5.0381 4.6509 34 1 4.8399 -6.7391 4.1536 35 1 4.6102 -6.5041 6.6117 36 1 3.0914 -7.0756 5.8797 37 1 1.9088 -4.5540 8.3144 38 1 1.8904 -6.2771 7.8681 39 1 3.3376 -5.8532 9.7204 40 1 1.3528 -3.7883 6.0478 41 1 1.1893 -5.4893 5.5505 42 1 2.6434 -3.1766 -1.8011 43 1 1.6889 -4.5377 -1.0029 44 1 -0.4658 -3.2555 -1.3907 45 1 0.4883 -1.8940 -2.1894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310266521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:48 Heat of formation + Delta-G solvation = -57.815807 kcal Electronic energy + Delta-G solvation = -20843.121422 eV Core-core repulsion = 17859.743755 eV Total energy + Delta-G solvation = -2983.377667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.24142 -37.14422 -36.51333 -34.34346 -31.80003 -31.47261 -30.82915 -26.13451 -25.67488 -25.08466 -22.91737 -22.03748 -21.01784 -20.12546 -19.73177 -18.87770 -17.47303 -16.18211 -15.39554 -15.21190 -15.07455 -14.44732 -14.23824 -14.00190 -13.88772 -13.41488 -13.24537 -13.09174 -12.70830 -12.38978 -11.93133 -11.77451 -11.45194 -11.18346 -11.14750 -10.99060 -10.90536 -10.82375 -10.60137 -10.41218 -10.29789 -10.20768 -10.13218 -10.04418 -9.82261 -9.34276 -8.72491 -8.32023 -8.00493 -7.44078 -5.90681 -3.91344 3.36688 3.44705 3.49758 3.98918 4.52341 4.61339 4.75968 4.79730 4.97036 5.06956 5.17812 5.34247 5.39804 5.42329 5.43645 5.51905 5.57426 5.59059 5.67203 5.72001 5.85013 5.94818 6.02747 6.15055 6.18668 6.21945 6.29876 6.33528 6.37610 6.40778 6.49030 6.56371 6.66233 6.72547 6.78631 6.96585 7.16360 7.40345 7.51636 7.65605 8.02767 8.05346 8.26432 8.62332 9.07782 9.71456 11.19436 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.003988 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.310401 B = 7019.427286 C = 7566.371429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.467 4.467 8 H 0.060 0.940 9 C 0.054 3.946 10 C 0.108 3.892 11 N -0.669 5.669 12 C 0.066 3.934 13 C -0.082 4.082 14 H 0.081 0.919 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.108 4.108 18 C -0.086 4.086 19 H 0.078 0.922 20 C 0.079 3.921 21 O -0.574 6.574 22 C -0.106 4.106 23 C -0.216 4.216 24 C -0.161 4.161 25 H 0.256 0.744 26 H 0.076 0.924 27 H -0.008 1.008 28 H 0.328 0.672 29 H 0.067 0.933 30 H 0.014 0.986 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.376 0.624 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -12.408 13.288 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.021 4.021 11 N -0.299 5.299 12 C -0.064 4.064 13 C -0.101 4.101 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.145 4.145 18 C -0.105 4.105 19 H 0.096 0.904 20 C 0.001 3.999 21 O -0.378 6.378 22 C -0.144 4.144 23 C -0.253 4.253 24 C -0.199 4.199 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.010 0.990 28 H 0.146 0.854 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.222 0.778 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.553 -11.490 12.953 17.676 hybrid contribution -0.484 -0.064 0.218 0.535 sum 3.069 -11.554 13.172 17.788 Atomic orbital electron populations 1.70023 1.05808 1.25959 1.50648 1.24932 0.94739 0.98698 0.95111 0.86615 0.80364 0.84181 0.77287 1.19780 1.21306 1.21270 1.20351 0.92987 0.88428 1.48762 0.92224 1.18831 0.96891 0.93687 0.85279 1.21530 0.91025 0.95707 0.93853 1.60281 1.21617 1.44776 1.03244 1.21931 0.95185 0.97652 0.91615 1.21128 0.97599 0.98141 0.93237 0.90035 1.21606 0.97072 0.97533 0.99128 1.21526 0.97933 1.01083 0.95058 1.21504 0.99807 0.96971 0.96246 1.21144 0.97982 0.99198 0.92136 0.90404 1.22284 0.88307 0.98853 0.90419 1.86490 1.34502 1.92740 1.24116 1.21523 0.96733 1.01136 0.95008 1.22981 0.98273 0.95403 1.08692 1.22527 0.92159 1.01201 1.03995 0.93450 0.90595 0.99045 0.85374 0.91465 0.96784 0.92637 0.91363 0.91866 0.92331 0.91714 0.92554 0.93711 0.93855 0.77813 0.91754 0.92133 0.90545 0.92272 0.92214 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 12.97 55.43 0.72 -24.72 16 2 C 0.07 1.86 5.39 -17.82 -0.10 1.76 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.47 -12.89 8.73 -34.44 -0.30 -13.19 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.05 1.33 1.53 -155.66 -0.24 1.09 16 10 C 0.11 2.44 5.51 -3.82 -0.02 2.41 16 11 N -0.67 -13.14 6.38 -113.78 -0.73 -13.86 16 12 C 0.07 1.07 5.14 -3.83 -0.02 1.05 16 13 C -0.08 -1.11 2.40 -90.62 -0.22 -1.33 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.43 4.97 -26.74 -0.13 -1.56 16 16 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 17 C -0.11 -1.14 5.10 -26.73 -0.14 -1.28 16 18 C -0.09 -0.92 2.43 -90.62 -0.22 -1.14 16 19 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 20 C 0.08 0.73 6.43 37.16 0.24 0.96 16 21 O -0.57 -5.45 13.19 -35.23 -0.46 -5.91 16 22 C -0.11 -1.19 4.49 -26.73 -0.12 -1.31 16 23 C -0.22 -4.75 9.96 -26.70 -0.27 -5.02 16 24 C -0.16 -3.84 9.48 -26.70 -0.25 -4.09 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.08 1.93 8.13 -51.93 -0.42 1.51 16 27 H -0.01 -0.18 8.09 -51.93 -0.42 -0.60 16 28 H 0.33 6.06 7.04 -39.29 -0.28 5.78 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.91 6.68 -51.92 -0.35 0.56 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.71 7.82 -51.93 -0.41 0.31 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 1.82 9.12 45.56 0.42 2.24 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -29.69 354.15 -9.86 -39.56 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.77 Total: 6.09 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.94 Total: -23.12 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: -0.01 Total: -38.58 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.46 Total: -5.91 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.69 -9.86 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.260 kcal (2) G-P(sol) polarization free energy of solvation -29.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds