Wall clock time and date at job start Mon Mar 30 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99682 * 2 1 4 4 H 1.48501 * 109.46974 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46889 * 299.99543 * 3 2 1 6 6 H 1.48497 * 109.47064 * 59.99350 * 3 2 1 7 7 C 1.37871 * 120.00569 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00409 * 187.13964 * 7 2 1 9 9 C 1.50706 * 119.99866 * 7.14739 * 7 2 1 10 10 C 1.53005 * 115.54652 * 275.24345 * 9 7 2 11 11 N 1.46898 * 109.47130 * 294.91878 * 10 9 7 12 12 C 1.46895 * 111.00090 * 174.69868 * 11 10 9 13 13 C 1.53003 * 109.47238 * 179.97438 * 12 11 10 14 14 H 1.08997 * 109.46757 * 55.00356 * 13 12 11 15 15 C 1.52992 * 109.47369 * 295.00307 * 13 12 11 16 16 C 1.52995 * 109.47462 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.46989 * 60.00038 * 16 15 13 18 18 C 1.53002 * 109.46994 * 300.00244 * 17 16 15 19 19 H 1.08996 * 109.47230 * 299.99494 * 18 17 16 20 20 C 1.53006 * 109.46872 * 180.02562 * 18 17 16 21 21 O 1.42898 * 109.47432 * 65.00271 * 20 18 17 22 22 C 1.52995 * 109.47452 * 60.00040 * 18 17 16 23 23 C 1.52994 * 117.50137 * 129.56964 * 9 7 2 24 24 C 1.53001 * 117.49870 * 60.91001 * 9 7 2 25 25 H 0.97001 * 120.00154 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47355 * 54.92132 * 10 9 7 27 27 H 1.09005 * 109.46489 * 174.92082 * 10 9 7 28 28 H 1.00897 * 111.00148 * 298.65664 * 11 10 9 29 29 H 1.08995 * 109.47220 * 300.00586 * 12 11 10 30 30 H 1.09006 * 109.46547 * 60.00325 * 12 11 10 31 31 H 1.08996 * 109.47225 * 300.00320 * 15 13 12 32 32 H 1.09009 * 109.47156 * 59.99897 * 15 13 12 33 33 H 1.09007 * 109.47032 * 300.00051 * 16 15 13 34 34 H 1.08994 * 109.47749 * 180.02562 * 16 15 13 35 35 H 1.09005 * 109.47547 * 180.02562 * 17 16 15 36 36 H 1.08997 * 109.47174 * 60.00323 * 17 16 15 37 37 H 1.09005 * 109.46854 * 185.00313 * 20 18 17 38 38 H 1.09003 * 109.46946 * 304.99528 * 20 18 17 39 39 H 0.96696 * 113.99739 * 180.02562 * 21 20 18 40 40 H 1.08994 * 109.47749 * 179.97438 * 22 18 17 41 41 H 1.09007 * 109.47032 * 59.99950 * 22 18 17 42 42 H 1.08996 * 117.49846 * 0.02562 * 23 9 7 43 43 H 1.08999 * 117.49853 * 145.01865 * 23 9 7 44 44 H 1.09005 * 117.49951 * 214.98459 * 24 9 7 45 45 H 1.08997 * 117.49925 * 0.02562 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0783 -1.1975 0.1168 9 6 1.2600 -2.4941 -0.1613 10 6 0.6770 -3.0850 1.1240 11 7 1.7704 -3.4586 2.0311 12 6 1.2477 -3.9134 3.3264 13 6 2.4134 -4.2935 4.2418 14 1 3.1015 -3.4520 4.3220 15 6 3.1493 -5.5001 3.6561 16 6 4.3153 -5.8797 4.5710 17 6 3.7795 -6.2340 5.9596 18 6 3.0434 -5.0273 6.5453 19 1 3.7315 -4.1857 6.6253 20 6 2.5081 -5.3814 7.9343 21 8 3.6035 -5.6224 8.8198 22 6 1.8775 -4.6476 5.6304 23 6 1.7694 -3.4729 -1.2211 24 6 0.4695 -2.6992 -1.4551 25 1 -0.4850 0.8400 -0.0004 26 1 0.0403 -2.3446 1.6081 27 1 0.0871 -3.9693 0.8824 28 1 2.3627 -4.1606 1.6136 29 1 0.6701 -3.1119 3.7868 30 1 0.6071 -4.7822 3.1748 31 1 2.4612 -6.3415 3.5757 32 1 3.5315 -5.2476 2.6669 33 1 5.0034 -5.0381 4.6509 34 1 4.8399 -6.7391 4.1536 35 1 4.6102 -6.5041 6.6117 36 1 3.0914 -7.0756 5.8797 37 1 1.9088 -4.5540 8.3144 38 1 1.8904 -6.2771 7.8681 39 1 3.3376 -5.8532 9.7204 40 1 1.3528 -3.7883 6.0478 41 1 1.1893 -5.4893 5.5505 42 1 2.6434 -3.1766 -1.8011 43 1 1.6889 -4.5377 -1.0029 44 1 -0.4658 -3.2555 -1.3907 45 1 0.4883 -1.8940 -2.1894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310266521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:47 Heat of formation + Delta-G solvation = -76.697837 kcal Electronic energy + Delta-G solvation = -20843.940208 eV Core-core repulsion = 17859.743755 eV Total energy + Delta-G solvation = -2984.196453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21410 -38.74926 -37.50888 -35.71483 -33.89842 -32.38190 -32.01791 -27.87426 -26.88529 -26.48956 -24.39201 -22.98979 -22.82278 -21.19811 -20.85901 -20.62258 -18.17269 -18.06949 -16.83623 -16.39688 -16.28952 -16.04145 -15.48375 -15.33557 -15.06504 -14.85226 -14.59523 -14.31828 -13.94675 -13.49031 -13.42484 -13.08931 -12.88859 -12.78029 -12.67370 -12.56840 -12.31024 -12.18861 -12.00821 -11.90515 -11.80650 -11.41341 -11.29973 -10.98215 -10.91583 -10.71698 -10.69353 -10.35649 -9.90609 -9.00625 -8.03173 -6.08784 1.41201 1.44084 1.54689 2.48382 3.18346 3.27011 3.46040 3.72372 3.76001 3.84766 3.99446 4.12541 4.37765 4.39588 4.41985 4.45190 4.55539 4.58397 4.62131 4.69240 4.71874 4.74215 4.76381 4.82413 4.84527 4.95343 4.99683 5.02388 5.09098 5.14604 5.28308 5.28855 5.33157 5.36391 5.46859 5.49904 5.63211 5.65142 5.76905 5.89701 6.39861 6.54212 6.80419 6.94735 6.94923 7.56283 9.06191 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.003988 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.310401 B = 7019.427286 C = 7566.371429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.479 4.479 8 H 0.047 0.953 9 C 0.026 3.974 10 C 0.123 3.877 11 N -0.681 5.681 12 C 0.069 3.931 13 C -0.075 4.075 14 H 0.059 0.941 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.102 4.102 18 C -0.086 4.086 19 H 0.059 0.941 20 C 0.081 3.919 21 O -0.592 6.592 22 C -0.099 4.099 23 C -0.188 4.188 24 C -0.168 4.168 25 H 0.255 0.745 26 H 0.040 0.960 27 H 0.005 0.995 28 H 0.337 0.663 29 H 0.051 0.949 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.395 0.605 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -13.968 14.139 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.517 4.517 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.007 4.007 11 N -0.312 5.312 12 C -0.060 4.060 13 C -0.094 4.094 14 H 0.078 0.922 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.140 4.140 18 C -0.105 4.105 19 H 0.078 0.922 20 C 0.004 3.996 21 O -0.401 6.401 22 C -0.137 4.137 23 C -0.225 4.225 24 C -0.206 4.206 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.023 0.977 28 H 0.156 0.844 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.977 -13.063 13.822 19.430 hybrid contribution -0.589 0.403 -0.031 0.714 sum 3.388 -12.661 13.790 19.025 Atomic orbital electron populations 1.70119 1.06872 1.26497 1.51658 1.25570 0.95485 1.01542 0.95123 0.85729 0.79281 0.80712 0.77222 1.19475 1.20860 1.21176 1.20572 0.92596 0.90156 1.48399 0.93520 1.18936 0.98037 0.93940 0.86573 1.21174 0.91295 0.95064 0.93126 1.60172 1.21139 1.45925 1.03981 1.21953 0.96289 0.97479 0.90307 1.21031 0.96231 0.98004 0.94150 0.92219 1.21557 0.97531 0.97146 0.98665 1.21500 0.97329 1.01147 0.95353 1.21457 0.99856 0.97114 0.95566 1.21103 0.97359 0.98687 0.93329 0.92230 1.22225 0.88223 0.99777 0.89411 1.86434 1.35106 1.92883 1.25645 1.21445 0.97100 1.01618 0.93551 1.22967 0.96959 0.96422 1.06137 1.22450 0.93688 1.01352 1.03121 0.93558 0.94163 0.97749 0.84405 0.93024 0.95420 0.91566 0.92506 0.92936 0.91120 0.92005 0.91492 0.93087 0.92379 0.75527 0.91843 0.90787 0.90582 0.89300 0.91064 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.18 12.97 21.45 0.28 -52.91 16 2 C 0.02 1.21 5.39 84.65 0.46 1.67 16 3 Si 0.94 44.94 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 5 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.48 -26.66 8.73 25.60 0.22 -26.44 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.03 1.27 1.53 -52.93 -0.08 1.19 16 10 C 0.12 5.54 5.51 86.31 0.48 6.02 16 11 N -0.68 -26.49 6.38 -513.89 -3.28 -29.76 16 12 C 0.07 2.19 5.14 86.30 0.44 2.64 16 13 C -0.08 -1.97 2.40 -10.79 -0.03 -2.00 16 14 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 15 C -0.11 -2.58 4.97 30.59 0.15 -2.42 16 16 C -0.12 -2.40 5.92 30.59 0.18 -2.22 16 17 C -0.10 -1.97 5.10 30.59 0.16 -1.81 16 18 C -0.09 -1.72 2.43 -10.79 -0.03 -1.75 16 19 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 20 C 0.08 1.31 6.43 71.98 0.46 1.77 16 21 O -0.59 -10.07 13.19 -148.98 -1.97 -12.04 16 22 C -0.10 -2.08 4.49 30.59 0.14 -1.94 16 23 C -0.19 -7.95 9.96 30.62 0.30 -7.64 16 24 C -0.17 -7.96 9.48 30.62 0.29 -7.67 16 25 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.04 2.08 8.13 -2.39 -0.02 2.06 16 27 H 0.00 0.19 8.09 -2.38 -0.02 0.17 16 28 H 0.34 12.06 7.04 -89.70 -0.63 11.42 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.03 0.81 8.14 -2.38 -0.02 0.80 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.44 6.68 -2.38 -0.02 1.43 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.24 7.82 -2.38 -0.02 1.22 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.40 2.96 9.12 -74.06 -0.68 2.29 16 40 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 45 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -63.21 354.15 -0.15 -63.36 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.36 Total: 24.98 kcal Atomic # 6 Polarization: -43.75 SS G_CDS: 3.15 Total: -40.60 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -3.00 Total: -82.67 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -1.97 Total: -12.04 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.21 -0.15 -63.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.336 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds