Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00501 * 2 1 4 4 H 1.48499 * 109.47370 * 269.99990 * 3 2 1 5 5 H 1.48503 * 109.46801 * 30.00195 * 3 2 1 6 6 H 1.48507 * 109.47193 * 149.99860 * 3 2 1 7 7 C 1.37880 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00362 * 173.36617 * 7 2 1 9 9 C 1.50706 * 119.99912 * 353.36630 * 7 2 1 10 10 C 1.52993 * 115.54812 * 85.27300 * 9 7 2 11 11 N 1.46897 * 109.47196 * 39.57436 * 10 9 7 12 12 C 1.46905 * 110.99980 * 174.70824 * 11 10 9 13 13 C 1.53001 * 109.47237 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47403 * 305.00235 * 13 12 11 15 15 C 1.53003 * 109.47117 * 65.00207 * 13 12 11 16 16 C 1.52999 * 109.47423 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46515 * 299.99948 * 16 15 13 18 18 C 1.52997 * 109.47450 * 60.00147 * 17 16 15 19 19 H 1.08999 * 109.47361 * 59.99372 * 18 17 16 20 20 C 1.53001 * 109.47450 * 179.97438 * 18 17 16 21 21 O 1.42906 * 109.46633 * 294.99776 * 20 18 17 22 22 C 1.52996 * 109.47224 * 184.99841 * 13 12 11 23 23 C 1.53003 * 117.51763 * 230.97589 * 9 7 2 24 24 C 1.52998 * 59.99917 * 107.48020 * 23 9 7 25 25 H 0.97001 * 119.99274 * 5.06626 * 1 2 3 26 26 H 1.08993 * 109.47397 * 279.57165 * 10 9 7 27 27 H 1.09003 * 109.46912 * 159.57282 * 10 9 7 28 28 H 1.00900 * 111.00424 * 298.66128 * 11 10 9 29 29 H 1.08995 * 109.46943 * 59.99962 * 12 11 10 30 30 H 1.09001 * 109.47082 * 299.99925 * 12 11 10 31 31 H 1.09006 * 109.46950 * 300.00502 * 15 13 12 32 32 H 1.08998 * 109.46961 * 59.99757 * 15 13 12 33 33 H 1.08998 * 109.46976 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.46913 * 59.99730 * 16 15 13 35 35 H 1.08999 * 109.47352 * 299.99513 * 17 16 15 36 36 H 1.09007 * 109.47086 * 180.02562 * 17 16 15 37 37 H 1.08992 * 109.47201 * 54.99389 * 20 18 17 38 38 H 1.08997 * 109.47118 * 175.00332 * 20 18 17 39 39 H 0.96705 * 114.00059 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.47252 * 300.00486 * 22 13 12 41 41 H 1.09004 * 109.46615 * 60.00316 * 22 13 12 42 42 H 1.08994 * 117.49756 * 214.97492 * 23 9 7 43 43 H 1.09003 * 117.49605 * 359.97438 * 23 9 7 44 44 H 1.09009 * 117.49734 * 252.50834 * 24 23 9 45 45 H 1.08994 * 117.52087 * 107.48368 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 -0.1086 9 6 1.2585 -2.4949 0.1497 10 6 0.6961 -3.0862 -1.1445 11 7 1.6659 -2.8967 -2.2314 12 6 1.2152 -3.5623 -3.4610 13 6 2.2483 -3.3426 -4.5680 14 1 2.4263 -2.2745 -4.6922 15 6 3.5578 -4.0370 -4.1885 16 6 4.5912 -3.8169 -5.2951 17 6 4.0654 -4.4018 -6.6074 18 6 2.7560 -3.7074 -6.9870 19 1 2.9338 -2.6392 -7.1107 20 6 2.2305 -4.2919 -8.2997 21 8 3.1418 -3.9841 -9.3566 22 6 1.7224 -3.9280 -5.8800 23 6 1.7515 -3.4733 1.2177 24 6 0.4482 -2.7007 1.4311 25 1 -0.4849 0.8368 -0.0742 26 1 -0.2370 -2.5834 -1.3983 27 1 0.5090 -4.1511 -1.0061 28 1 1.8399 -1.9162 -2.3940 29 1 0.2574 -3.1441 -3.7704 30 1 1.1024 -4.6305 -3.2756 31 1 3.9326 -3.6201 -3.2536 32 1 3.3799 -5.1052 -4.0643 33 1 5.5239 -4.3120 -5.0249 34 1 4.7690 -2.7486 -5.4188 35 1 3.8876 -5.4701 -6.4837 36 1 4.8018 -4.2454 -7.3958 37 1 2.1370 -5.3736 -8.2041 38 1 1.2548 -3.8612 -8.5243 39 1 2.8719 -4.3249 -10.2204 40 1 1.5444 -4.9961 -5.7558 41 1 0.7895 -3.4332 -6.1503 42 1 1.6752 -4.5382 0.9984 43 1 2.6159 -3.1763 1.8117 44 1 0.4551 -1.8954 2.1657 45 1 -0.4857 -3.2570 1.3521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310266522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -60.259817 kcal Electronic energy + Delta-G solvation = -20951.842817 eV Core-core repulsion = 17968.359170 eV Total energy + Delta-G solvation = -2983.483647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.12990 -37.05051 -36.47210 -34.25618 -31.88255 -31.38763 -30.78395 -26.11101 -25.54721 -25.09603 -22.73701 -21.85559 -20.96492 -20.16972 -19.72283 -18.90613 -17.44566 -15.90310 -15.34927 -15.18659 -14.67872 -14.50210 -14.27689 -14.14500 -13.87875 -13.60416 -13.16119 -12.78931 -12.63488 -12.03280 -11.95835 -11.63761 -11.46170 -11.23980 -11.13998 -10.94219 -10.91415 -10.79493 -10.68171 -10.41232 -10.20983 -10.18715 -10.07233 -9.89683 -9.77910 -9.32308 -8.74942 -8.39396 -8.01174 -7.28217 -5.98764 -4.02903 3.30386 3.38385 3.42681 4.01950 4.43190 4.67228 4.82362 4.89022 5.10481 5.14226 5.24950 5.30427 5.43229 5.47084 5.49299 5.57515 5.67528 5.73874 5.76700 5.81818 6.01099 6.02157 6.10955 6.18631 6.23903 6.29424 6.38402 6.41407 6.46841 6.52084 6.64280 6.72911 6.78352 6.84317 6.87633 7.02351 7.18878 7.42438 7.50194 7.57035 7.92843 8.16778 8.48257 8.59260 9.00165 9.61105 11.09308 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.004237 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.367195 B = 6606.610134 C = 7104.926793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.068 3.932 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.053 3.947 10 C 0.108 3.892 11 N -0.672 5.672 12 C 0.062 3.938 13 C -0.080 4.080 14 H 0.068 0.932 15 C -0.105 4.105 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.086 4.086 19 H 0.076 0.924 20 C 0.079 3.921 21 O -0.573 6.573 22 C -0.106 4.106 23 C -0.208 4.208 24 C -0.164 4.164 25 H 0.258 0.742 26 H 0.026 0.974 27 H 0.035 0.965 28 H 0.352 0.648 29 H 0.016 0.984 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.375 0.625 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -8.812 -14.403 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.052 3.948 10 C -0.021 4.021 11 N -0.305 5.305 12 C -0.068 4.068 13 C -0.099 4.099 14 H 0.087 0.913 15 C -0.142 4.142 16 C -0.159 4.159 17 C -0.145 4.145 18 C -0.104 4.104 19 H 0.094 0.906 20 C 0.001 3.999 21 O -0.378 6.378 22 C -0.144 4.144 23 C -0.245 4.245 24 C -0.202 4.202 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.172 0.828 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.221 0.779 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.572 -8.909 -13.631 16.671 hybrid contribution -0.833 1.235 -0.715 1.653 sum 2.738 -7.674 -14.346 16.498 Atomic orbital electron populations 1.70003 1.05843 1.26465 1.49711 1.24999 0.94749 0.98731 0.94980 0.86689 0.80045 0.83788 0.78095 1.20749 1.21421 1.19830 1.20408 0.93155 0.88521 1.49870 0.92049 1.18775 0.96928 0.93536 0.85550 1.21338 0.92587 0.96239 0.91979 1.60389 1.45953 1.19989 1.04148 1.21936 0.94852 0.99150 0.90823 1.21086 0.95649 1.00119 0.93040 0.91348 1.21472 0.94066 1.00039 0.98635 1.21590 0.98471 1.00900 0.94979 1.21505 0.96374 0.99218 0.97402 1.21148 0.96052 1.00970 0.92262 0.90588 1.22287 0.91589 0.98375 0.87600 1.86499 1.50622 1.81076 1.19629 1.21547 0.97418 1.01177 0.94292 1.22983 0.97989 0.95609 1.07915 1.22520 0.92198 1.01315 1.04208 0.93232 0.95599 0.94659 0.82775 0.96583 0.92290 0.90077 0.92740 0.92376 0.92193 0.92545 0.91905 0.93812 0.93838 0.77862 0.91955 0.92168 0.91952 0.90809 0.90321 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.65 12.93 55.43 0.72 -23.93 16 2 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 3 Si 0.89 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.48 -12.79 7.47 -34.44 -0.26 -13.05 16 8 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 9 C 0.05 1.30 1.76 -155.66 -0.27 1.02 16 10 C 0.11 2.42 5.80 -3.83 -0.02 2.40 16 11 N -0.67 -13.56 5.71 -113.78 -0.65 -14.21 16 12 C 0.06 1.03 5.07 -3.82 -0.02 1.01 16 13 C -0.08 -1.13 2.33 -90.62 -0.21 -1.34 16 14 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 15 C -0.10 -1.45 5.09 -26.73 -0.14 -1.58 16 16 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 17 C -0.11 -1.22 5.10 -26.73 -0.14 -1.36 16 18 C -0.09 -0.96 2.43 -90.60 -0.22 -1.18 16 19 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 20 C 0.08 0.75 6.43 37.16 0.24 0.99 16 21 O -0.57 -5.64 13.19 -35.23 -0.46 -6.10 16 22 C -0.11 -1.24 4.49 -26.71 -0.12 -1.36 16 23 C -0.21 -4.68 9.88 -26.73 -0.26 -4.94 16 24 C -0.16 -3.94 9.46 -26.73 -0.25 -4.19 16 25 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.74 7.93 -51.93 -0.41 0.33 16 28 H 0.35 7.72 7.71 -39.29 -0.30 7.42 16 29 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.30 7.75 -51.93 -0.40 0.90 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 1.92 9.12 45.56 0.42 2.33 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 43 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 44 H 0.08 2.01 8.14 -51.92 -0.42 1.58 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 354.14 15.07 5.34 5.34 Total: -1.00 -28.33 354.14 -9.85 -38.18 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.84 Total: 8.35 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -1.93 Total: -23.51 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.07 Total: -38.14 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.46 Total: -6.10 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.33 -9.85 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.077 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds