Wall clock time and date at job start Mon Mar 30 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00501 * 2 1 4 4 H 1.48499 * 109.47370 * 269.99990 * 3 2 1 5 5 H 1.48503 * 109.46801 * 30.00195 * 3 2 1 6 6 H 1.48507 * 109.47193 * 149.99860 * 3 2 1 7 7 C 1.37880 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00362 * 173.36617 * 7 2 1 9 9 C 1.50706 * 119.99912 * 353.36630 * 7 2 1 10 10 C 1.52993 * 115.54812 * 85.27300 * 9 7 2 11 11 N 1.46897 * 109.47196 * 39.57436 * 10 9 7 12 12 C 1.46905 * 110.99980 * 174.70824 * 11 10 9 13 13 C 1.53001 * 109.47237 * 179.97438 * 12 11 10 14 14 H 1.08998 * 109.47403 * 305.00235 * 13 12 11 15 15 C 1.53003 * 109.47117 * 65.00207 * 13 12 11 16 16 C 1.52999 * 109.47423 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.46515 * 299.99948 * 16 15 13 18 18 C 1.52997 * 109.47450 * 60.00147 * 17 16 15 19 19 H 1.08999 * 109.47361 * 59.99372 * 18 17 16 20 20 C 1.53001 * 109.47450 * 179.97438 * 18 17 16 21 21 O 1.42906 * 109.46633 * 294.99776 * 20 18 17 22 22 C 1.52996 * 109.47224 * 184.99841 * 13 12 11 23 23 C 1.53003 * 117.51763 * 230.97589 * 9 7 2 24 24 C 1.52998 * 59.99917 * 107.48020 * 23 9 7 25 25 H 0.97001 * 119.99274 * 5.06626 * 1 2 3 26 26 H 1.08993 * 109.47397 * 279.57165 * 10 9 7 27 27 H 1.09003 * 109.46912 * 159.57282 * 10 9 7 28 28 H 1.00900 * 111.00424 * 298.66128 * 11 10 9 29 29 H 1.08995 * 109.46943 * 59.99962 * 12 11 10 30 30 H 1.09001 * 109.47082 * 299.99925 * 12 11 10 31 31 H 1.09006 * 109.46950 * 300.00502 * 15 13 12 32 32 H 1.08998 * 109.46961 * 59.99757 * 15 13 12 33 33 H 1.08998 * 109.46976 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.46913 * 59.99730 * 16 15 13 35 35 H 1.08999 * 109.47352 * 299.99513 * 17 16 15 36 36 H 1.09007 * 109.47086 * 180.02562 * 17 16 15 37 37 H 1.08992 * 109.47201 * 54.99389 * 20 18 17 38 38 H 1.08997 * 109.47118 * 175.00332 * 20 18 17 39 39 H 0.96705 * 114.00059 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.47252 * 300.00486 * 22 13 12 41 41 H 1.09004 * 109.46615 * 60.00316 * 22 13 12 42 42 H 1.08994 * 117.49756 * 214.97492 * 23 9 7 43 43 H 1.09003 * 117.49605 * 359.97438 * 23 9 7 44 44 H 1.09009 * 117.49734 * 252.50834 * 24 23 9 45 45 H 1.08994 * 117.52087 * 107.48368 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5469 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0791 -1.1973 -0.1086 9 6 1.2585 -2.4949 0.1497 10 6 0.6961 -3.0862 -1.1445 11 7 1.6659 -2.8967 -2.2314 12 6 1.2152 -3.5623 -3.4610 13 6 2.2483 -3.3426 -4.5680 14 1 2.4263 -2.2745 -4.6922 15 6 3.5578 -4.0370 -4.1885 16 6 4.5912 -3.8169 -5.2951 17 6 4.0654 -4.4018 -6.6074 18 6 2.7560 -3.7074 -6.9870 19 1 2.9338 -2.6392 -7.1107 20 6 2.2305 -4.2919 -8.2997 21 8 3.1418 -3.9841 -9.3566 22 6 1.7224 -3.9280 -5.8800 23 6 1.7515 -3.4733 1.2177 24 6 0.4482 -2.7007 1.4311 25 1 -0.4849 0.8368 -0.0742 26 1 -0.2370 -2.5834 -1.3983 27 1 0.5090 -4.1511 -1.0061 28 1 1.8399 -1.9162 -2.3940 29 1 0.2574 -3.1441 -3.7704 30 1 1.1024 -4.6305 -3.2756 31 1 3.9326 -3.6201 -3.2536 32 1 3.3799 -5.1052 -4.0643 33 1 5.5239 -4.3120 -5.0249 34 1 4.7690 -2.7486 -5.4188 35 1 3.8876 -5.4701 -6.4837 36 1 4.8018 -4.2454 -7.3958 37 1 2.1370 -5.3736 -8.2041 38 1 1.2548 -3.8612 -8.5243 39 1 2.8719 -4.3249 -10.2204 40 1 1.5444 -4.9961 -5.7558 41 1 0.7895 -3.4332 -6.1503 42 1 1.6752 -4.5382 0.9984 43 1 2.6159 -3.1763 1.8117 44 1 0.4551 -1.8954 2.1657 45 1 -0.4857 -3.2570 1.3521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310266522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:50 Heat of formation + Delta-G solvation = -77.505214 kcal Electronic energy + Delta-G solvation = -20952.590634 eV Core-core repulsion = 17968.359170 eV Total energy + Delta-G solvation = -2984.231463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.14254 -38.69405 -37.47712 -35.66498 -33.94362 -32.37058 -32.00127 -27.84161 -26.89495 -26.40382 -24.19186 -22.88719 -22.81709 -21.38250 -20.84613 -20.60269 -18.17032 -17.84559 -16.59733 -16.57750 -16.06961 -15.90161 -15.73254 -15.47961 -15.01841 -14.89657 -14.46890 -14.33659 -13.77826 -13.46073 -13.28217 -13.01024 -12.89104 -12.82169 -12.65419 -12.56742 -12.35387 -12.28548 -11.95127 -11.87693 -11.73805 -11.32970 -11.27764 -10.98245 -10.88259 -10.73649 -10.70084 -10.36730 -9.89433 -8.94974 -8.05324 -6.14029 1.41429 1.44831 1.53389 2.45253 3.20926 3.24932 3.50323 3.75210 3.79455 3.86836 4.05550 4.15386 4.37680 4.41796 4.45796 4.47131 4.58909 4.64095 4.68184 4.71227 4.75056 4.78112 4.86021 4.87530 4.94403 4.95740 4.99474 5.04925 5.14221 5.17302 5.29229 5.30868 5.35677 5.40030 5.50877 5.61460 5.66377 5.66885 5.67374 5.82645 6.43132 6.61266 6.76469 6.93728 6.95638 7.52370 9.02171 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021795 B = 0.004237 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.367195 B = 6606.610134 C = 7104.926793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.028 3.972 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.488 4.488 8 H 0.050 0.950 9 C 0.026 3.974 10 C 0.120 3.880 11 N -0.673 5.673 12 C 0.065 3.935 13 C -0.075 4.075 14 H 0.052 0.948 15 C -0.099 4.099 16 C -0.119 4.119 17 C -0.101 4.101 18 C -0.086 4.086 19 H 0.058 0.942 20 C 0.082 3.918 21 O -0.593 6.593 22 C -0.098 4.098 23 C -0.187 4.187 24 C -0.169 4.169 25 H 0.257 0.743 26 H -0.002 1.002 27 H 0.051 0.949 28 H 0.339 0.661 29 H 0.012 0.988 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.395 0.605 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -10.088 -15.700 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.010 4.010 11 N -0.304 5.304 12 C -0.065 4.065 13 C -0.094 4.094 14 H 0.070 0.930 15 C -0.137 4.137 16 C -0.156 4.156 17 C -0.139 4.139 18 C -0.105 4.105 19 H 0.077 0.923 20 C 0.004 3.996 21 O -0.401 6.401 22 C -0.136 4.136 23 C -0.224 4.224 24 C -0.207 4.207 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.069 0.931 28 H 0.157 0.843 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.245 0.755 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.034 -10.205 -14.948 18.543 hybrid contribution -0.953 1.604 -0.311 1.891 sum 3.081 -8.602 -15.259 17.785 Atomic orbital electron populations 1.70104 1.06967 1.26947 1.50827 1.25575 0.95370 1.01408 0.94860 0.85796 0.78795 0.80335 0.78174 1.20120 1.21557 1.19685 1.20559 0.92758 0.89836 1.49428 0.93132 1.18963 0.97806 0.93854 0.86796 1.21147 0.91596 0.96449 0.91788 1.60394 1.45470 1.19161 1.05364 1.22021 0.95336 0.99135 0.89982 1.21022 0.95258 0.99476 0.93615 0.92965 1.21385 0.94200 1.00089 0.97994 1.21552 0.98421 1.00531 0.95119 1.21447 0.96311 0.99671 0.96445 1.21112 0.95903 1.00129 0.93335 0.92311 1.22222 0.91628 0.99109 0.86614 1.86442 1.51147 1.81581 1.20949 1.21459 0.97573 1.01753 0.92844 1.22980 0.96869 0.96505 1.06011 1.22430 0.93501 1.01320 1.03489 0.93417 0.98384 0.93097 0.84267 0.96999 0.91210 0.92682 0.91999 0.91551 0.93189 0.91495 0.92114 0.92329 0.92958 0.75528 0.90603 0.91755 0.89470 0.90974 0.92624 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.52 12.93 21.45 0.28 -51.24 16 2 C 0.03 1.49 5.39 84.66 0.46 1.94 16 3 Si 0.94 43.31 29.55 68.60 2.03 45.33 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.49 -26.13 7.47 25.60 0.19 -25.94 16 8 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 9 C 0.03 1.30 1.76 -52.93 -0.09 1.20 16 10 C 0.12 5.35 5.80 86.30 0.50 5.85 16 11 N -0.67 -27.14 5.71 -513.90 -2.94 -30.08 16 12 C 0.06 2.08 5.07 86.30 0.44 2.52 16 13 C -0.07 -2.05 2.33 -10.79 -0.03 -2.07 16 14 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 15 C -0.10 -2.65 5.09 30.60 0.16 -2.49 16 16 C -0.12 -2.78 5.92 30.59 0.18 -2.60 16 17 C -0.10 -2.10 5.10 30.59 0.16 -1.94 16 18 C -0.09 -1.78 2.43 -10.78 -0.03 -1.81 16 19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 20 C 0.08 1.34 6.43 71.98 0.46 1.80 16 21 O -0.59 -10.30 13.19 -148.98 -1.97 -12.27 16 22 C -0.10 -2.10 4.49 30.61 0.14 -1.96 16 23 C -0.19 -8.16 9.88 30.59 0.30 -7.86 16 24 C -0.17 -8.08 9.46 30.59 0.29 -7.79 16 25 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 26 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 28 H 0.34 15.16 7.71 -89.69 -0.69 14.47 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.05 1.76 7.75 -2.38 -0.02 1.74 16 32 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.31 7.82 -2.38 -0.02 1.29 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.40 3.06 9.12 -74.05 -0.68 2.39 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.09 3.37 8.08 -2.39 -0.02 3.35 16 43 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.06 2.88 8.14 -2.38 -0.02 2.86 16 45 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -59.90 354.14 0.10 -59.80 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -0.43 Total: 29.59 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 3.13 Total: -41.14 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -2.66 Total: -81.31 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.97 Total: -12.27 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -59.90 0.10 -59.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.705 kcal (2) G-P(sol) polarization free energy of solvation -59.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds