Wall clock time and date at job start Mon Mar 30 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99972 * 2 1 4 4 H 1.48499 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47093 * 299.99916 * 3 2 1 6 6 H 1.48508 * 109.47007 * 59.99870 * 3 2 1 7 7 C 1.37877 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00304 * 173.37089 * 7 2 1 9 9 C 1.50708 * 119.99905 * 353.36856 * 7 2 1 10 10 C 1.52996 * 115.54827 * 85.27651 * 9 7 2 11 11 N 1.46903 * 109.47409 * 39.57230 * 10 9 7 12 12 C 1.46901 * 111.00077 * 174.71405 * 11 10 9 13 13 C 1.52994 * 109.47044 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.47502 * 304.99853 * 13 12 11 15 15 C 1.53004 * 109.47292 * 64.99783 * 13 12 11 16 16 C 1.53007 * 109.47051 * 59.99632 * 15 13 12 17 17 C 1.53003 * 109.46791 * 60.00311 * 16 15 13 18 18 C 1.52999 * 109.47214 * 299.99990 * 17 16 15 19 19 H 1.09000 * 109.47235 * 300.00052 * 18 17 16 20 20 C 1.53001 * 109.47434 * 180.02562 * 18 17 16 21 21 O 1.42895 * 109.47043 * 64.99417 * 20 18 17 22 22 C 1.52997 * 109.47167 * 184.99521 * 13 12 11 23 23 C 1.52998 * 117.51517 * 230.97449 * 9 7 2 24 24 C 1.52998 * 60.00119 * 107.48247 * 23 9 7 25 25 H 0.97004 * 120.00153 * 5.05023 * 1 2 3 26 26 H 1.09007 * 109.46947 * 279.57157 * 10 9 7 27 27 H 1.09005 * 109.47163 * 159.57157 * 10 9 7 28 28 H 1.00903 * 110.99903 * 298.66065 * 11 10 9 29 29 H 1.09000 * 109.47263 * 59.99651 * 12 11 10 30 30 H 1.09003 * 109.46785 * 299.99868 * 12 11 10 31 31 H 1.09000 * 109.47005 * 300.00093 * 15 13 12 32 32 H 1.09000 * 109.47562 * 179.97438 * 15 13 12 33 33 H 1.09000 * 109.47197 * 300.00541 * 16 15 13 34 34 H 1.08997 * 109.47219 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.47359 * 59.99697 * 17 16 15 36 36 H 1.09001 * 109.47093 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.47180 * 184.99956 * 20 18 17 38 38 H 1.09003 * 109.46663 * 305.00053 * 20 18 17 39 39 H 0.96707 * 113.99925 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.47369 * 179.97438 * 22 13 12 41 41 H 1.09006 * 109.46824 * 60.00290 * 22 13 12 42 42 H 1.09005 * 117.49680 * 214.97051 * 23 9 7 43 43 H 1.08995 * 117.50487 * 359.97438 * 23 9 7 44 44 H 1.09001 * 117.50145 * 252.51144 * 24 23 9 45 45 H 1.08999 * 117.50367 * 107.48399 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0791 -1.1973 -0.1074 9 6 1.2585 -2.4948 0.1518 10 6 0.6962 -3.0873 -1.1418 11 7 1.6661 -2.8987 -2.2289 12 6 1.2154 -3.5653 -3.4580 13 6 2.2486 -3.3465 -4.5650 14 1 2.4266 -2.2784 -4.6901 15 6 3.5581 -4.0406 -4.1848 16 6 3.3084 -5.5399 -4.0092 17 6 2.7825 -6.1263 -5.3209 18 6 1.4730 -5.4323 -5.7010 19 1 0.7369 -5.5881 -4.9124 20 6 0.9467 -6.0191 -7.0124 21 8 0.6036 -7.3923 -6.8159 22 6 1.7227 -3.9330 -5.8766 23 6 1.7515 -3.4721 1.2207 24 6 0.4482 -2.6995 1.4334 25 1 -0.4850 0.8368 -0.0740 26 1 -0.2370 -2.5845 -1.3961 27 1 0.5091 -4.1521 -1.0025 28 1 1.8400 -1.9183 -2.3924 29 1 0.2576 -3.1474 -3.7677 30 1 1.1027 -4.6333 -3.2716 31 1 3.9328 -3.6228 -3.2504 32 1 4.2941 -3.8852 -4.9737 33 1 2.5723 -5.6957 -3.2206 34 1 4.2414 -6.0344 -3.7388 35 1 3.5185 -5.9705 -6.1096 36 1 2.6050 -7.1945 -5.1959 37 1 0.0629 -5.4655 -7.3293 38 1 1.7174 -5.9434 -7.7794 39 1 0.2622 -7.8297 -7.6079 40 1 2.4586 -3.7768 -6.6654 41 1 0.7898 -3.4385 -6.1474 42 1 1.6752 -4.5374 1.0023 43 1 2.6158 -3.1748 1.8145 44 1 0.4549 -1.8935 2.1672 45 1 -0.4856 -3.2562 1.3549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310266523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:53 Heat of formation + Delta-G solvation = -55.448114 kcal Electronic energy + Delta-G solvation = -21312.139428 eV Core-core repulsion = 18328.864432 eV Total energy + Delta-G solvation = -2983.274996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.38010 -36.99698 -36.46032 -33.90255 -31.87518 -31.33284 -30.67602 -26.21660 -25.53006 -25.10999 -22.62732 -22.10306 -20.97997 -20.94605 -19.08548 -18.32013 -17.29092 -15.91047 -15.62054 -15.16461 -14.82258 -14.56218 -14.18836 -14.09184 -13.64222 -13.49547 -13.19206 -12.69714 -12.50841 -12.15356 -11.87382 -11.69824 -11.56164 -11.23393 -11.14788 -10.96331 -10.87800 -10.83830 -10.63755 -10.39747 -10.16239 -10.06049 -9.90435 -9.78503 -9.68569 -9.31864 -8.73774 -8.39090 -7.99622 -7.25501 -5.98194 -4.02236 3.29186 3.38675 3.43270 4.08826 4.43433 4.72214 4.80722 4.95948 5.09920 5.24712 5.26601 5.31755 5.44419 5.53199 5.55641 5.62396 5.64987 5.73589 5.79707 5.86422 6.03956 6.07993 6.17772 6.23617 6.24709 6.31902 6.34160 6.48655 6.55120 6.60572 6.66683 6.76182 6.79261 6.86002 6.89337 7.04191 7.20246 7.47218 7.51806 7.58301 7.93510 8.19105 8.50536 8.60531 9.01189 9.61684 11.09959 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.004520 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.128885 B = 6192.972857 C = 6563.666924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.479 4.479 8 H 0.062 0.938 9 C 0.052 3.948 10 C 0.108 3.892 11 N -0.671 5.671 12 C 0.059 3.941 13 C -0.082 4.082 14 H 0.069 0.931 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.107 4.107 18 C -0.088 4.088 19 H 0.080 0.920 20 C 0.079 3.921 21 O -0.572 6.572 22 C -0.106 4.106 23 C -0.207 4.207 24 C -0.164 4.164 25 H 0.257 0.743 26 H 0.025 0.975 27 H 0.035 0.965 28 H 0.351 0.649 29 H 0.013 0.987 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.375 0.625 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.309 -9.847 -13.611 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.135 4.135 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.051 3.949 10 C -0.021 4.021 11 N -0.304 5.304 12 C -0.071 4.071 13 C -0.101 4.101 14 H 0.087 0.913 15 C -0.142 4.142 16 C -0.157 4.157 17 C -0.144 4.144 18 C -0.107 4.107 19 H 0.099 0.901 20 C 0.002 3.998 21 O -0.377 6.377 22 C -0.144 4.144 23 C -0.245 4.245 24 C -0.203 4.203 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.171 0.829 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.221 0.779 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.752 -10.094 -12.733 16.481 hybrid contribution -0.679 1.485 -0.883 1.856 sum 2.073 -8.609 -13.616 16.243 Atomic orbital electron populations 1.70015 1.05838 1.26333 1.49848 1.25003 0.94743 0.98728 0.95035 0.86640 0.80421 0.84128 0.77455 1.19644 1.21249 1.21184 1.20444 0.93171 0.88496 1.49646 0.91997 1.18792 0.96932 0.93561 0.85575 1.21329 0.92572 0.96215 0.91961 1.60397 1.45927 1.19829 1.04201 1.22066 0.94673 0.99562 0.90784 1.21068 0.95966 0.99547 0.93474 0.91287 1.21418 0.96015 0.94885 1.01834 1.21547 1.00828 0.96027 0.97249 1.21505 0.95689 0.99554 0.97686 1.21184 0.98298 0.94693 0.96512 0.90150 1.22295 0.97905 0.81933 0.97716 1.86512 1.86959 1.24646 1.39586 1.21529 1.00815 0.94071 0.97954 1.22978 0.97960 0.95626 1.07895 1.22518 0.92216 1.01303 1.04217 0.93297 0.95659 0.94690 0.82925 0.96838 0.91533 0.90128 0.93402 0.91211 0.92653 0.92806 0.91916 0.93924 0.93966 0.77933 0.92069 0.92203 0.91946 0.90831 0.90341 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 12.93 55.43 0.72 -23.98 16 2 C 0.07 1.80 5.39 -17.82 -0.10 1.70 16 3 Si 0.89 20.86 29.55 -169.99 -5.02 15.83 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.48 -12.73 7.47 -34.44 -0.26 -12.99 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.05 1.28 1.76 -155.66 -0.27 1.01 16 10 C 0.11 2.45 5.80 -3.82 -0.02 2.43 16 11 N -0.67 -13.55 5.71 -113.78 -0.65 -14.20 16 12 C 0.06 0.98 4.36 -3.83 -0.02 0.97 16 13 C -0.08 -1.15 2.80 -90.62 -0.25 -1.40 16 14 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 15 C -0.10 -1.44 5.34 -26.73 -0.14 -1.58 16 16 C -0.12 -1.57 5.65 -26.73 -0.15 -1.72 16 17 C -0.11 -1.27 5.10 -26.73 -0.14 -1.41 16 18 C -0.09 -1.04 2.15 -90.62 -0.20 -1.24 16 19 H 0.08 1.09 6.54 -51.93 -0.34 0.75 16 20 C 0.08 0.78 6.43 37.16 0.24 1.02 16 21 O -0.57 -5.93 13.19 -35.23 -0.46 -6.40 16 22 C -0.11 -1.23 4.73 -26.73 -0.13 -1.36 16 23 C -0.21 -4.70 9.88 -26.73 -0.26 -4.96 16 24 C -0.16 -3.96 9.46 -26.73 -0.25 -4.22 16 25 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 28 H 0.35 7.66 7.71 -39.29 -0.30 7.36 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 1.11 4.83 -51.93 -0.25 0.85 16 31 H 0.08 1.29 7.75 -51.93 -0.40 0.88 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.04 6.32 -51.93 -0.33 0.71 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.78 7.82 -51.93 -0.41 0.37 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.37 2.09 9.12 45.56 0.42 2.50 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 43 H 0.07 1.66 8.14 -51.93 -0.42 1.23 16 44 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 347.12 15.07 5.23 5.23 Total: -1.00 -28.41 347.12 -9.63 -38.04 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -7.49 Total: 9.22 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: -1.95 Total: -23.75 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.07 Total: -38.18 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.46 Total: -6.40 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.41 -9.63 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.405 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds