Wall clock time and date at job start Mon Mar 30 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99972 * 2 1 4 4 H 1.48499 * 109.46945 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47093 * 299.99916 * 3 2 1 6 6 H 1.48508 * 109.47007 * 59.99870 * 3 2 1 7 7 C 1.37877 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00304 * 173.37089 * 7 2 1 9 9 C 1.50708 * 119.99905 * 353.36856 * 7 2 1 10 10 C 1.52996 * 115.54827 * 85.27651 * 9 7 2 11 11 N 1.46903 * 109.47409 * 39.57230 * 10 9 7 12 12 C 1.46901 * 111.00077 * 174.71405 * 11 10 9 13 13 C 1.52994 * 109.47044 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.47502 * 304.99853 * 13 12 11 15 15 C 1.53004 * 109.47292 * 64.99783 * 13 12 11 16 16 C 1.53007 * 109.47051 * 59.99632 * 15 13 12 17 17 C 1.53003 * 109.46791 * 60.00311 * 16 15 13 18 18 C 1.52999 * 109.47214 * 299.99990 * 17 16 15 19 19 H 1.09000 * 109.47235 * 300.00052 * 18 17 16 20 20 C 1.53001 * 109.47434 * 180.02562 * 18 17 16 21 21 O 1.42895 * 109.47043 * 64.99417 * 20 18 17 22 22 C 1.52997 * 109.47167 * 184.99521 * 13 12 11 23 23 C 1.52998 * 117.51517 * 230.97449 * 9 7 2 24 24 C 1.52998 * 60.00119 * 107.48247 * 23 9 7 25 25 H 0.97004 * 120.00153 * 5.05023 * 1 2 3 26 26 H 1.09007 * 109.46947 * 279.57157 * 10 9 7 27 27 H 1.09005 * 109.47163 * 159.57157 * 10 9 7 28 28 H 1.00903 * 110.99903 * 298.66065 * 11 10 9 29 29 H 1.09000 * 109.47263 * 59.99651 * 12 11 10 30 30 H 1.09003 * 109.46785 * 299.99868 * 12 11 10 31 31 H 1.09000 * 109.47005 * 300.00093 * 15 13 12 32 32 H 1.09000 * 109.47562 * 179.97438 * 15 13 12 33 33 H 1.09000 * 109.47197 * 300.00541 * 16 15 13 34 34 H 1.08997 * 109.47219 * 179.97438 * 16 15 13 35 35 H 1.09001 * 109.47359 * 59.99697 * 17 16 15 36 36 H 1.09001 * 109.47093 * 179.97438 * 17 16 15 37 37 H 1.09002 * 109.47180 * 184.99956 * 20 18 17 38 38 H 1.09003 * 109.46663 * 305.00053 * 20 18 17 39 39 H 0.96707 * 113.99925 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.47369 * 179.97438 * 22 13 12 41 41 H 1.09006 * 109.46824 * 60.00290 * 22 13 12 42 42 H 1.09005 * 117.49680 * 214.97051 * 23 9 7 43 43 H 1.08995 * 117.50487 * 359.97438 * 23 9 7 44 44 H 1.09001 * 117.50145 * 252.51144 * 24 23 9 45 45 H 1.08999 * 117.50367 * 107.48399 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0791 -1.1973 -0.1074 9 6 1.2585 -2.4948 0.1518 10 6 0.6962 -3.0873 -1.1418 11 7 1.6661 -2.8987 -2.2289 12 6 1.2154 -3.5653 -3.4580 13 6 2.2486 -3.3465 -4.5650 14 1 2.4266 -2.2784 -4.6901 15 6 3.5581 -4.0406 -4.1848 16 6 3.3084 -5.5399 -4.0092 17 6 2.7825 -6.1263 -5.3209 18 6 1.4730 -5.4323 -5.7010 19 1 0.7369 -5.5881 -4.9124 20 6 0.9467 -6.0191 -7.0124 21 8 0.6036 -7.3923 -6.8159 22 6 1.7227 -3.9330 -5.8766 23 6 1.7515 -3.4721 1.2207 24 6 0.4482 -2.6995 1.4334 25 1 -0.4850 0.8368 -0.0740 26 1 -0.2370 -2.5845 -1.3961 27 1 0.5091 -4.1521 -1.0025 28 1 1.8400 -1.9183 -2.3924 29 1 0.2576 -3.1474 -3.7677 30 1 1.1027 -4.6333 -3.2716 31 1 3.9328 -3.6228 -3.2504 32 1 4.2941 -3.8852 -4.9737 33 1 2.5723 -5.6957 -3.2206 34 1 4.2414 -6.0344 -3.7388 35 1 3.5185 -5.9705 -6.1096 36 1 2.6050 -7.1945 -5.1959 37 1 0.0629 -5.4655 -7.3293 38 1 1.7174 -5.9434 -7.7794 39 1 0.2622 -7.8297 -7.6079 40 1 2.4586 -3.7768 -6.6654 41 1 0.7898 -3.4385 -6.1474 42 1 1.6752 -4.5374 1.0023 43 1 2.6158 -3.1748 1.8145 44 1 0.4549 -1.8935 2.1672 45 1 -0.4856 -3.2562 1.3549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310266523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:52 Heat of formation + Delta-G solvation = -73.115879 kcal Electronic energy + Delta-G solvation = -21312.905560 eV Core-core repulsion = 18328.864432 eV Total energy + Delta-G solvation = -2984.041128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44044 -38.65799 -37.48953 -35.36726 -33.94152 -32.34085 -31.85624 -27.93766 -26.98939 -26.40050 -24.16396 -23.16202 -22.85132 -21.93771 -20.97369 -19.46188 -18.11568 -17.81938 -16.84514 -16.58448 -16.17131 -16.06656 -15.73454 -15.30983 -14.97906 -14.89609 -14.45973 -14.18880 -13.68448 -13.44344 -13.29944 -13.06811 -12.92650 -12.86650 -12.81106 -12.56488 -12.29404 -12.24517 -11.98585 -11.94084 -11.81063 -11.25621 -11.03555 -10.90836 -10.81684 -10.73911 -10.67966 -10.38281 -9.90237 -8.95135 -8.04794 -6.13885 1.41037 1.45734 1.55922 2.45952 3.22716 3.35389 3.42622 3.67647 3.83052 3.93216 4.02749 4.22524 4.33720 4.41475 4.44120 4.56837 4.58108 4.66177 4.68733 4.70966 4.75309 4.76564 4.80115 4.90631 4.94308 4.96589 5.03371 5.07961 5.13158 5.20362 5.25377 5.28206 5.35739 5.46108 5.56268 5.63515 5.65449 5.66677 5.68343 5.83026 6.42711 6.60752 6.78419 6.94186 6.97130 7.52630 9.03071 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.023923 B = 0.004520 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.128885 B = 6192.972857 C = 6563.666924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.288 1.288 7 C -0.485 4.485 8 H 0.052 0.948 9 C 0.026 3.974 10 C 0.121 3.879 11 N -0.670 5.670 12 C 0.063 3.937 13 C -0.079 4.079 14 H 0.063 0.937 15 C -0.100 4.100 16 C -0.116 4.116 17 C -0.099 4.099 18 C -0.090 4.090 19 H 0.056 0.944 20 C 0.082 3.918 21 O -0.594 6.594 22 C -0.098 4.098 23 C -0.186 4.186 24 C -0.169 4.169 25 H 0.257 0.743 26 H -0.004 1.004 27 H 0.045 0.955 28 H 0.340 0.660 29 H 0.005 0.995 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.395 0.605 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 -10.452 -15.360 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.173 4.173 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.215 1.215 7 C -0.523 4.523 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.009 4.009 11 N -0.300 5.300 12 C -0.066 4.066 13 C -0.097 4.097 14 H 0.082 0.918 15 C -0.137 4.137 16 C -0.154 4.154 17 C -0.137 4.137 18 C -0.108 4.108 19 H 0.074 0.926 20 C 0.004 3.996 21 O -0.402 6.402 22 C -0.136 4.136 23 C -0.223 4.223 24 C -0.207 4.207 25 H 0.066 0.934 26 H 0.015 0.985 27 H 0.063 0.937 28 H 0.158 0.842 29 H 0.023 0.977 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.244 0.756 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.741 -10.723 -14.499 18.417 hybrid contribution -0.986 1.612 -0.322 1.917 sum 2.755 -9.111 -14.821 17.615 Atomic orbital electron populations 1.70121 1.07061 1.26913 1.50910 1.25604 0.95371 1.01524 0.94841 0.85701 0.79365 0.80485 0.77253 1.19199 1.20714 1.21459 1.20570 0.92770 0.89666 1.49295 0.92979 1.18985 0.97789 0.93974 0.86690 1.21123 0.91633 0.96110 0.91989 1.60395 1.45305 1.19086 1.05256 1.22120 0.95231 0.99000 0.90243 1.21044 0.95359 0.99575 0.93767 0.91820 1.21358 0.96137 0.95011 1.01203 1.21502 1.00573 0.95797 0.97518 1.21433 0.96073 0.98996 0.97178 1.21157 0.97685 0.94885 0.97107 0.92560 1.22243 0.98799 0.81841 0.96705 1.86456 1.87258 1.24965 1.41505 1.21464 1.01506 0.93831 0.96796 1.22970 0.96915 0.96395 1.06064 1.22425 0.93435 1.01315 1.03572 0.93423 0.98539 0.93659 0.84180 0.97679 0.91403 0.92706 0.91415 0.93462 0.91981 0.91195 0.92509 0.93092 0.92112 0.75589 0.89916 0.91824 0.89737 0.90804 0.92508 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.75 12.93 21.45 0.28 -51.47 16 2 C 0.03 1.41 5.39 84.65 0.46 1.87 16 3 Si 0.95 43.08 29.55 68.60 2.03 45.11 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.48 -25.98 7.47 25.60 0.19 -25.79 16 8 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 9 C 0.03 1.30 1.76 -52.93 -0.09 1.21 16 10 C 0.12 5.55 5.80 86.30 0.50 6.05 16 11 N -0.67 -27.38 5.71 -513.88 -2.94 -30.32 16 12 C 0.06 2.12 4.36 86.30 0.38 2.49 16 13 C -0.08 -2.13 2.80 -10.80 -0.03 -2.16 16 14 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 15 C -0.10 -2.63 5.34 30.60 0.16 -2.46 16 16 C -0.12 -2.94 5.65 30.60 0.17 -2.77 16 17 C -0.10 -2.16 5.10 30.59 0.16 -2.00 16 18 C -0.09 -1.94 2.15 -10.79 -0.02 -1.97 16 19 H 0.06 1.49 6.54 -2.39 -0.02 1.47 16 20 C 0.08 1.39 6.43 71.98 0.46 1.86 16 21 O -0.59 -11.01 13.19 -148.98 -1.97 -12.98 16 22 C -0.10 -2.07 4.73 30.59 0.14 -1.92 16 23 C -0.19 -8.29 9.88 30.59 0.30 -7.99 16 24 C -0.17 -8.21 9.46 30.59 0.29 -7.92 16 25 H 0.26 14.01 8.32 -92.71 -0.77 13.24 16 26 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 27 H 0.05 1.94 7.93 -2.38 -0.02 1.93 16 28 H 0.34 15.14 7.71 -89.69 -0.69 14.45 16 29 H 0.01 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.07 2.27 4.83 -2.39 -0.01 2.26 16 31 H 0.05 1.73 7.75 -2.39 -0.02 1.71 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.40 6.32 -2.39 -0.02 1.38 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.31 7.82 -2.39 -0.02 1.30 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.39 3.45 9.12 -74.05 -0.68 2.78 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.08 3.37 8.08 -2.38 -0.02 3.35 16 43 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 44 H 0.06 2.96 8.14 -2.39 -0.02 2.95 16 45 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -60.48 347.12 0.06 -60.42 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: -0.41 Total: 30.74 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 3.07 Total: -41.50 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.66 Total: -81.79 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -1.97 Total: -12.98 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -60.48 0.06 -60.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310266523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.700 kcal (2) G-P(sol) polarization free energy of solvation -60.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds