Wall clock time and date at job start Mon Mar 30 2020 07:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 110.05883 * 2 1 4 4 C 1.54374 * 110.04711 * 238.52137 * 2 1 3 5 5 C 1.54883 * 104.19961 * 217.09277 * 4 2 1 6 6 C 1.54898 * 102.74557 * 37.97262 * 5 4 2 7 7 C 1.53876 * 110.02665 * 121.41659 * 2 1 3 8 8 C 1.53001 * 110.03280 * 238.61532 * 7 2 1 9 9 N 1.46501 * 110.03436 * 359.97438 * 7 2 1 10 10 C 1.36936 * 119.99846 * 245.45367 * 9 7 2 11 11 H 1.08007 * 119.99558 * 117.08324 * 10 9 7 12 12 C 1.38809 * 120.00306 * 297.08836 * 10 9 7 13 13 N 1.31615 * 120.00084 * 162.42177 * 12 10 9 14 14 Si 1.86800 * 119.99876 * 342.41958 * 12 10 9 15 15 H 1.48497 * 109.47006 * 94.84555 * 14 12 10 16 16 H 1.48501 * 109.46977 * 334.84598 * 14 12 10 17 17 H 1.48508 * 109.47012 * 214.84472 * 14 12 10 18 18 C 1.46496 * 120.00194 * 65.45611 * 9 7 2 19 19 C 1.54262 * 110.03378 * 232.71875 * 18 9 7 20 20 C 1.54969 * 104.15951 * 217.13485 * 19 18 9 21 21 C 1.54889 * 102.77791 * 37.88767 * 20 19 18 22 22 C 1.53881 * 110.03398 * 115.49888 * 18 9 7 23 23 H 1.08994 * 109.47242 * 286.85794 * 1 2 3 24 24 H 1.09008 * 109.46706 * 46.85291 * 1 2 3 25 25 H 1.08993 * 109.47503 * 166.85386 * 1 2 3 26 26 H 0.96700 * 113.99713 * 306.31294 * 3 2 1 27 27 H 1.08996 * 110.45828 * 98.42794 * 4 2 1 28 28 H 1.09000 * 110.50765 * 335.78964 * 4 2 1 29 29 H 1.08997 * 110.76175 * 279.65901 * 5 4 2 30 30 H 1.09003 * 110.75532 * 156.28367 * 5 4 2 31 31 H 1.09002 * 110.48503 * 203.37209 * 6 5 4 32 32 H 1.08998 * 110.48233 * 80.73624 * 6 5 4 33 33 H 1.09002 * 109.47055 * 178.91541 * 8 7 2 34 34 H 1.09000 * 109.46864 * 298.92045 * 8 7 2 35 35 H 1.08998 * 109.46787 * 58.91339 * 8 7 2 36 36 H 0.96999 * 120.00044 * 185.00336 * 13 12 10 37 37 H 1.09001 * 110.01677 * 354.11182 * 18 9 7 38 38 H 1.08994 * 110.48735 * 335.78132 * 19 18 9 39 39 H 1.08997 * 110.48836 * 98.42960 * 19 18 9 40 40 H 1.09004 * 110.71914 * 279.57211 * 20 19 18 41 41 H 1.08995 * 110.92282 * 156.29606 * 20 19 18 42 42 H 1.08999 * 110.48887 * 203.40350 * 21 20 19 43 43 H 1.08998 * 110.59987 * 80.81386 * 21 20 19 44 44 H 1.08996 * 110.03285 * 238.57376 * 22 18 9 45 45 H 1.08999 * 110.02899 * 359.95286 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0592 -0.7573 -1.2368 5 6 3.3146 -1.5016 -0.7182 6 6 2.8880 -1.9407 0.7047 7 6 2.0570 -0.7536 1.2338 8 6 2.9398 0.1706 2.0749 9 7 0.9357 -1.2446 2.0388 10 6 0.7292 -0.7499 3.2989 11 1 -0.1789 -0.2109 3.5252 12 6 1.6870 -0.9412 4.2852 13 7 1.6715 -0.1972 5.3708 14 14 2.9981 -2.2546 4.0717 15 1 4.2219 -1.6431 3.4943 16 1 2.4951 -3.3122 3.1587 17 1 3.3194 -2.8525 5.3926 18 6 0.0354 -2.2647 1.4957 19 6 -1.4286 -1.7920 1.6093 20 6 -2.2176 -3.0809 1.9523 21 6 -1.2548 -3.8276 2.9086 22 6 0.1460 -3.5587 2.3211 23 1 -0.3633 0.2980 0.9834 24 1 -0.3633 0.7029 -0.7499 25 1 -0.3634 -1.0006 -0.2337 26 1 1.6636 1.8911 -0.7119 27 1 2.3304 -0.0558 -2.0258 28 1 1.3154 -1.4683 -1.5963 29 1 4.1716 -0.8295 -0.6743 30 1 3.5340 -2.3691 -1.3406 31 1 3.7641 -2.1030 1.3325 32 1 2.2781 -2.8429 0.6587 33 1 3.2922 -0.3662 2.9557 34 1 3.7943 0.4958 1.4815 35 1 2.3617 1.0405 2.3866 36 1 2.3818 -0.2805 6.0260 37 1 0.2835 -2.4645 0.4533 38 1 -1.5316 -1.0579 2.4083 39 1 -1.7698 -1.3759 0.6614 40 1 -2.4036 -3.6698 1.0540 41 1 -3.1540 -2.8416 2.4562 42 1 -1.4698 -4.8962 2.9085 43 1 -1.3286 -3.4247 3.9186 44 1 0.4469 -4.3865 1.6791 45 1 0.8701 -3.4278 3.1252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313141900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:54 Heat of formation + Delta-G solvation = -13.529123 kcal Electronic energy + Delta-G solvation = -23812.658498 eV Core-core repulsion = 20831.201246 eV Total energy + Delta-G solvation = -2981.457252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.84177 -37.19261 -34.84747 -33.45820 -31.40363 -30.33022 -28.98682 -27.73442 -26.67764 -25.18851 -24.14019 -22.09729 -20.61381 -19.92902 -19.07347 -18.43441 -16.59111 -15.76471 -15.38886 -15.33369 -14.84869 -14.39978 -13.82941 -13.54493 -13.05621 -12.93613 -12.58955 -12.43623 -12.24089 -12.09601 -11.84781 -11.42303 -11.15897 -11.11602 -10.98273 -10.69009 -10.57214 -10.44781 -10.30003 -10.15710 -10.09764 -9.94849 -9.74767 -9.66583 -9.54599 -9.17676 -9.13176 -8.98728 -8.36626 -6.30236 -5.88263 -3.68224 3.34098 3.48271 3.51536 4.51294 4.70590 4.92755 5.11004 5.29973 5.32765 5.42212 5.43830 5.48628 5.69528 5.78771 5.87243 6.01039 6.05441 6.09270 6.11419 6.22493 6.25936 6.28858 6.32903 6.41634 6.46730 6.49946 6.52645 6.57506 6.61347 6.62900 6.69557 6.83953 6.88552 6.94385 7.04390 7.06916 7.21513 7.27942 7.31043 7.65231 8.19109 8.30919 8.69623 9.17677 9.71549 10.29391 11.15419 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.012599 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.856848 B = 2221.914829 C = 3005.709525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.114 3.886 3 O -0.549 6.549 4 C -0.147 4.147 5 C -0.120 4.120 6 C -0.142 4.142 7 C 0.208 3.792 8 C -0.121 4.121 9 N -0.581 5.581 10 C -0.271 4.271 11 H 0.067 0.933 12 C 0.064 3.936 13 N -0.896 5.896 14 Si 0.868 3.132 15 H -0.281 1.281 16 H -0.245 1.245 17 H -0.309 1.309 18 C 0.170 3.830 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.148 4.148 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.356 0.644 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.263 0.737 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 -3.549 -11.489 12.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.071 3.929 3 O -0.352 6.352 4 C -0.186 4.186 5 C -0.158 4.158 6 C -0.181 4.181 7 C 0.120 3.880 8 C -0.178 4.178 9 N -0.302 5.302 10 C -0.400 4.400 11 H 0.084 0.916 12 C -0.139 4.139 13 N -0.535 5.535 14 Si 0.699 3.301 15 H -0.209 1.209 16 H -0.169 1.169 17 H -0.238 1.238 18 C 0.064 3.936 19 C -0.174 4.174 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.187 4.187 23 H 0.105 0.895 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.201 0.799 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.307 -3.760 -10.730 11.445 hybrid contribution 0.530 -0.544 -0.550 0.938 sum -0.778 -4.304 -11.280 12.098 Atomic orbital electron populations 1.22914 0.95609 1.01443 1.02875 1.22596 0.92983 0.81946 0.95348 1.86710 1.71183 1.22554 1.54791 1.23075 0.97967 0.99565 0.97953 1.22386 0.97576 0.99099 0.96697 1.23047 1.00021 0.99642 0.95429 1.20477 0.88166 0.90359 0.88989 1.21878 0.97433 1.00135 0.98315 1.44226 1.29856 1.42353 1.13754 1.18271 1.06317 1.31295 0.84115 0.91588 1.26052 0.97697 0.95852 0.94316 1.69799 1.33122 1.39185 1.11360 0.87554 0.82064 0.84217 0.76250 1.20869 1.16931 1.23760 1.21155 0.89937 0.88143 0.94343 1.23016 0.95988 0.97277 1.01138 1.22445 0.97772 0.97538 0.98399 1.22232 0.95615 0.97994 0.99542 1.22939 0.97408 0.97429 1.00927 0.89452 0.95203 0.91104 0.79863 0.92207 0.91665 0.91733 0.92526 0.92200 0.91270 0.92148 0.94817 0.91165 0.92719 0.93141 0.89796 0.92872 0.92976 0.92804 0.93656 0.91578 0.94296 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 6.34 37.16 0.24 -2.66 16 2 C 0.11 2.01 1.23 -89.44 -0.11 1.90 16 3 O -0.55 -9.75 11.15 -35.23 -0.39 -10.14 16 4 C -0.15 -2.21 6.10 -25.02 -0.15 -2.36 16 5 C -0.12 -1.88 6.91 -24.74 -0.17 -2.05 16 6 C -0.14 -2.69 4.62 -25.07 -0.12 -2.81 16 7 C 0.21 4.29 0.54 -130.70 -0.07 4.22 16 8 C -0.12 -2.80 5.95 37.16 0.22 -2.58 16 9 N -0.58 -12.62 0.37 -148.47 -0.06 -12.68 16 10 C -0.27 -7.02 7.17 -15.06 -0.11 -7.12 16 11 H 0.07 1.92 6.98 -52.48 -0.37 1.55 16 12 C 0.06 1.74 4.14 -17.43 -0.07 1.67 16 13 N -0.90 -26.40 13.96 55.49 0.77 -25.62 16 14 Si 0.87 21.45 21.35 -169.99 -3.63 17.83 16 15 H -0.28 -6.90 6.08 56.52 0.34 -6.55 16 16 H -0.24 -5.67 5.05 56.52 0.29 -5.39 16 17 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 18 C 0.17 3.25 1.22 -66.81 -0.08 3.17 16 19 C -0.14 -2.40 4.59 -25.03 -0.11 -2.52 16 20 C -0.12 -1.95 6.91 -24.70 -0.17 -2.12 16 21 C -0.12 -2.02 6.83 -25.07 -0.17 -2.19 16 22 C -0.15 -2.86 5.88 -25.61 -0.15 -3.01 16 23 H 0.09 1.75 6.04 -51.93 -0.31 1.43 16 24 H 0.03 0.43 8.09 -51.92 -0.42 0.01 16 25 H 0.07 1.15 3.74 -51.93 -0.19 0.95 16 26 H 0.36 4.74 8.99 45.56 0.41 5.15 16 27 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 28 H 0.06 0.92 7.65 -51.93 -0.40 0.52 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.20 6.16 -51.93 -0.32 0.88 16 32 H 0.07 1.30 6.26 -51.93 -0.32 0.97 16 33 H 0.06 1.51 2.32 -51.93 -0.12 1.39 16 34 H 0.03 0.73 7.91 -51.93 -0.41 0.31 16 35 H 0.07 1.79 7.46 -51.93 -0.39 1.41 16 36 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 37 H 0.05 0.91 5.71 -51.93 -0.30 0.62 16 38 H 0.08 1.73 6.18 -51.93 -0.32 1.41 16 39 H 0.05 0.85 6.04 -51.93 -0.31 0.54 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.91 3.55 -51.93 -0.18 1.73 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -28.25 299.96 -6.46 -34.72 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.65 Total: 9.85 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.03 Total: -18.47 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.72 Total: -38.30 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.39 Total: -10.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -3.63 Total: 17.83 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.25 -6.46 -34.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.186 kcal (2) G-P(sol) polarization free energy of solvation -28.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds