Wall clock time and date at job start Mon Mar 30 2020 07:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 110.05883 * 2 1 4 4 C 1.54374 * 110.04711 * 238.52137 * 2 1 3 5 5 C 1.54883 * 104.19961 * 217.09277 * 4 2 1 6 6 C 1.54898 * 102.74557 * 37.97262 * 5 4 2 7 7 C 1.53876 * 110.02665 * 121.41659 * 2 1 3 8 8 C 1.53001 * 110.03280 * 238.61532 * 7 2 1 9 9 N 1.46501 * 110.03436 * 359.97438 * 7 2 1 10 10 C 1.36936 * 119.99846 * 245.45367 * 9 7 2 11 11 H 1.08007 * 119.99558 * 117.08324 * 10 9 7 12 12 C 1.38809 * 120.00306 * 297.08836 * 10 9 7 13 13 N 1.31615 * 120.00084 * 162.42177 * 12 10 9 14 14 Si 1.86800 * 119.99876 * 342.41958 * 12 10 9 15 15 H 1.48497 * 109.47006 * 94.84555 * 14 12 10 16 16 H 1.48501 * 109.46977 * 334.84598 * 14 12 10 17 17 H 1.48508 * 109.47012 * 214.84472 * 14 12 10 18 18 C 1.46496 * 120.00194 * 65.45611 * 9 7 2 19 19 C 1.54262 * 110.03378 * 232.71875 * 18 9 7 20 20 C 1.54969 * 104.15951 * 217.13485 * 19 18 9 21 21 C 1.54889 * 102.77791 * 37.88767 * 20 19 18 22 22 C 1.53881 * 110.03398 * 115.49888 * 18 9 7 23 23 H 1.08994 * 109.47242 * 286.85794 * 1 2 3 24 24 H 1.09008 * 109.46706 * 46.85291 * 1 2 3 25 25 H 1.08993 * 109.47503 * 166.85386 * 1 2 3 26 26 H 0.96700 * 113.99713 * 306.31294 * 3 2 1 27 27 H 1.08996 * 110.45828 * 98.42794 * 4 2 1 28 28 H 1.09000 * 110.50765 * 335.78964 * 4 2 1 29 29 H 1.08997 * 110.76175 * 279.65901 * 5 4 2 30 30 H 1.09003 * 110.75532 * 156.28367 * 5 4 2 31 31 H 1.09002 * 110.48503 * 203.37209 * 6 5 4 32 32 H 1.08998 * 110.48233 * 80.73624 * 6 5 4 33 33 H 1.09002 * 109.47055 * 178.91541 * 8 7 2 34 34 H 1.09000 * 109.46864 * 298.92045 * 8 7 2 35 35 H 1.08998 * 109.46787 * 58.91339 * 8 7 2 36 36 H 0.96999 * 120.00044 * 185.00336 * 13 12 10 37 37 H 1.09001 * 110.01677 * 354.11182 * 18 9 7 38 38 H 1.08994 * 110.48735 * 335.78132 * 19 18 9 39 39 H 1.08997 * 110.48836 * 98.42960 * 19 18 9 40 40 H 1.09004 * 110.71914 * 279.57211 * 20 19 18 41 41 H 1.08995 * 110.92282 * 156.29606 * 20 19 18 42 42 H 1.08999 * 110.48887 * 203.40350 * 21 20 19 43 43 H 1.08998 * 110.59987 * 80.81386 * 21 20 19 44 44 H 1.08996 * 110.03285 * 238.57376 * 22 18 9 45 45 H 1.08999 * 110.02899 * 359.95286 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0592 -0.7573 -1.2368 5 6 3.3146 -1.5016 -0.7182 6 6 2.8880 -1.9407 0.7047 7 6 2.0570 -0.7536 1.2338 8 6 2.9398 0.1706 2.0749 9 7 0.9357 -1.2446 2.0388 10 6 0.7292 -0.7499 3.2989 11 1 -0.1789 -0.2109 3.5252 12 6 1.6870 -0.9412 4.2852 13 7 1.6715 -0.1972 5.3708 14 14 2.9981 -2.2546 4.0717 15 1 4.2219 -1.6431 3.4943 16 1 2.4951 -3.3122 3.1587 17 1 3.3194 -2.8525 5.3926 18 6 0.0354 -2.2647 1.4957 19 6 -1.4286 -1.7920 1.6093 20 6 -2.2176 -3.0809 1.9523 21 6 -1.2548 -3.8276 2.9086 22 6 0.1460 -3.5587 2.3211 23 1 -0.3633 0.2980 0.9834 24 1 -0.3633 0.7029 -0.7499 25 1 -0.3634 -1.0006 -0.2337 26 1 1.6636 1.8911 -0.7119 27 1 2.3304 -0.0558 -2.0258 28 1 1.3154 -1.4683 -1.5963 29 1 4.1716 -0.8295 -0.6743 30 1 3.5340 -2.3691 -1.3406 31 1 3.7641 -2.1030 1.3325 32 1 2.2781 -2.8429 0.6587 33 1 3.2922 -0.3662 2.9557 34 1 3.7943 0.4958 1.4815 35 1 2.3617 1.0405 2.3866 36 1 2.3818 -0.2805 6.0260 37 1 0.2835 -2.4645 0.4533 38 1 -1.5316 -1.0579 2.4083 39 1 -1.7698 -1.3759 0.6614 40 1 -2.4036 -3.6698 1.0540 41 1 -3.1540 -2.8416 2.4562 42 1 -1.4698 -4.8962 2.9085 43 1 -1.3286 -3.4247 3.9186 44 1 0.4469 -4.3865 1.6791 45 1 0.8701 -3.4278 3.1252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313141900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:53 Heat of formation + Delta-G solvation = -32.387569 kcal Electronic energy + Delta-G solvation = -23813.476262 eV Core-core repulsion = 20831.201246 eV Total energy + Delta-G solvation = -2982.275016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.34806 -38.62873 -36.36578 -35.09844 -33.25300 -31.84807 -30.52885 -29.16573 -28.33459 -26.73552 -25.79509 -23.73014 -21.97071 -21.28437 -20.63338 -20.16233 -18.45111 -17.16479 -16.93193 -16.79145 -16.31205 -16.08369 -15.49060 -15.21255 -14.55894 -14.42737 -14.14516 -14.07980 -13.91528 -13.71078 -13.26069 -13.10100 -12.86528 -12.58617 -12.46049 -12.26509 -12.09044 -11.89232 -11.80135 -11.63946 -11.53444 -11.46445 -11.30399 -11.23968 -11.12303 -10.88406 -10.76535 -10.47461 -10.44836 -8.25140 -7.89358 -5.80314 1.32357 1.40968 1.51300 2.44798 3.06545 3.34750 3.53818 3.78703 3.98118 4.03675 4.07417 4.15381 4.31475 4.41800 4.49794 4.61170 4.65329 4.70995 4.78444 4.82838 4.94310 4.97247 4.98714 4.99932 5.03015 5.05008 5.10729 5.14695 5.21920 5.23016 5.24915 5.27621 5.39667 5.45349 5.54773 5.61877 5.68748 5.70800 5.74505 5.79467 6.09636 6.49639 7.15399 7.32760 7.73159 8.29880 9.05084 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.015273 B = 0.012599 C = 0.009313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.856848 B = 2221.914829 C = 3005.709525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 O -0.571 6.571 4 C -0.136 4.136 5 C -0.113 4.113 6 C -0.144 4.144 7 C 0.195 3.805 8 C -0.112 4.112 9 N -0.585 5.585 10 C -0.238 4.238 11 H 0.021 0.979 12 C 0.016 3.984 13 N -0.949 5.949 14 Si 0.917 3.083 15 H -0.281 1.281 16 H -0.215 1.215 17 H -0.328 1.328 18 C 0.168 3.832 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.154 4.154 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.377 0.623 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.258 0.742 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -5.649 -15.778 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 O -0.378 6.378 4 C -0.174 4.174 5 C -0.151 4.151 6 C -0.183 4.183 7 C 0.108 3.892 8 C -0.169 4.169 9 N -0.307 5.307 10 C -0.369 4.369 11 H 0.038 0.962 12 C -0.182 4.182 13 N -0.592 5.592 14 Si 0.748 3.252 15 H -0.209 1.209 16 H -0.139 1.139 17 H -0.258 1.258 18 C 0.063 3.937 19 C -0.170 4.170 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.193 4.193 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.101 0.899 26 H 0.226 0.774 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.688 -5.871 -15.080 16.270 hybrid contribution 0.577 0.232 0.764 0.985 sum -1.111 -5.639 -14.316 15.426 Atomic orbital electron populations 1.22793 0.95149 1.02750 1.01396 1.22482 0.93275 0.82077 0.95190 1.86655 1.71628 1.23138 1.56369 1.23006 0.97785 0.99856 0.96728 1.22386 0.97764 1.00267 0.94676 1.23003 0.99040 0.98812 0.97399 1.20651 0.87544 0.91315 0.89710 1.21742 0.97887 0.99093 0.98157 1.44226 1.30699 1.43282 1.12520 1.17937 1.04024 1.29005 0.85932 0.96161 1.26554 1.00010 0.97499 0.94125 1.69937 1.34468 1.41818 1.12986 0.86762 0.80047 0.82781 0.75641 1.20898 1.13873 1.25814 1.21328 0.89770 0.87224 0.95368 1.22917 0.95850 0.97488 1.00788 1.22427 0.97195 0.96289 0.99251 1.22216 0.95223 0.99762 0.98225 1.22952 0.97588 0.98382 1.00331 0.93496 0.92566 0.89865 0.77450 0.89843 0.89693 0.92103 0.89491 0.93883 0.90577 0.94401 0.93700 0.94924 0.93315 0.90572 0.93950 0.90676 0.89753 0.92137 0.90954 0.94674 0.91673 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 6.34 71.98 0.46 -4.63 16 2 C 0.11 3.65 1.23 -10.03 -0.01 3.64 16 3 O -0.57 -19.24 11.15 -148.98 -1.66 -20.90 16 4 C -0.14 -3.34 6.10 31.70 0.19 -3.15 16 5 C -0.11 -3.01 6.91 31.89 0.22 -2.79 16 6 C -0.14 -4.99 4.62 31.67 0.15 -4.85 16 7 C 0.20 7.82 0.54 4.33 0.00 7.82 16 8 C -0.11 -5.30 5.95 71.98 0.43 -4.87 16 9 N -0.59 -25.38 0.37 -623.64 -0.23 -25.61 16 10 C -0.24 -12.98 7.17 84.03 0.60 -12.38 16 11 H 0.02 1.31 6.98 -2.91 -0.02 1.29 16 12 C 0.02 0.91 4.14 84.86 0.35 1.26 16 13 N -0.95 -59.83 13.96 21.65 0.30 -59.53 16 14 Si 0.92 45.95 21.35 68.60 1.46 47.41 16 15 H -0.28 -13.91 6.08 99.48 0.60 -13.30 16 16 H -0.22 -9.68 5.05 99.48 0.50 -9.18 16 17 H -0.33 -17.31 7.11 99.48 0.71 -16.60 16 18 C 0.17 6.04 1.22 45.72 0.06 6.09 16 19 C -0.13 -4.46 4.59 31.70 0.15 -4.32 16 20 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 21 C -0.12 -3.83 6.83 31.67 0.22 -3.61 16 22 C -0.15 -5.57 5.88 31.32 0.18 -5.39 16 23 H 0.05 1.85 6.04 -2.39 -0.01 1.84 16 24 H 0.06 1.44 8.09 -2.38 -0.02 1.42 16 25 H 0.08 2.33 3.74 -2.39 -0.01 2.32 16 26 H 0.38 9.00 8.99 -74.06 -0.67 8.33 16 27 H 0.08 1.72 8.07 -2.39 -0.02 1.71 16 28 H 0.08 1.81 7.65 -2.39 -0.02 1.79 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.04 1.63 6.16 -2.39 -0.01 1.61 16 32 H 0.08 2.53 6.26 -2.39 -0.01 2.52 16 33 H 0.04 1.95 2.32 -2.39 -0.01 1.94 16 34 H 0.04 1.95 7.91 -2.39 -0.02 1.93 16 35 H 0.03 1.73 7.46 -2.39 -0.02 1.71 16 36 H 0.26 15.67 8.32 -92.71 -0.77 14.90 16 37 H 0.08 2.38 5.71 -2.39 -0.01 2.37 16 38 H 0.04 1.79 6.18 -2.39 -0.01 1.78 16 39 H 0.07 2.19 6.04 -2.39 -0.01 2.17 16 40 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.05 2.25 3.55 -2.39 -0.01 2.24 16 Total: -1.00 -66.83 299.96 3.10 -63.73 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.02 Total: 25.10 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.21 Total: -30.21 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: 0.07 Total: -85.14 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -1.66 Total: -20.90 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.46 Total: 47.41 kcal Total: -66.83 3.10 -63.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.344 kcal (2) G-P(sol) polarization free energy of solvation -66.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds