Wall clock time and date at job start Mon Mar 30 2020 07:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.01582 * 2 1 4 4 C 1.36935 * 120.00130 * 271.55150 * 3 2 1 5 5 H 1.08006 * 119.99905 * 222.05968 * 4 3 2 6 6 C 1.38815 * 120.00097 * 42.05632 * 4 3 2 7 7 N 1.31622 * 119.99716 * 26.87001 * 6 4 3 8 8 Si 1.86793 * 119.99970 * 206.87280 * 6 4 3 9 9 H 1.48501 * 109.47531 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47459 * 120.00121 * 8 6 4 11 11 H 1.48509 * 109.47005 * 240.00078 * 8 6 4 12 12 C 1.46507 * 119.99882 * 91.55594 * 3 2 1 13 13 C 1.54887 * 110.75603 * 124.77434 * 12 3 2 14 14 C 1.54268 * 104.19434 * 156.25543 * 13 12 3 15 15 C 1.53883 * 106.59893 * 336.38882 * 14 13 12 16 16 C 1.54269 * 106.59542 * 0.02562 * 15 14 13 17 17 C 1.54269 * 110.02783 * 121.39311 * 2 1 3 18 18 C 1.54895 * 104.19124 * 142.94170 * 17 2 1 19 19 C 1.54887 * 102.74864 * 322.05525 * 18 17 2 20 20 C 1.53866 * 110.06964 * 238.58215 * 2 1 3 21 21 C 1.53002 * 110.03785 * 359.97438 * 20 2 1 22 22 O 1.42902 * 110.03442 * 121.40917 * 20 2 1 23 23 H 1.09007 * 109.47109 * 341.55784 * 1 2 3 24 24 H 1.09000 * 109.47551 * 101.55564 * 1 2 3 25 25 H 1.09002 * 109.47481 * 221.55995 * 1 2 3 26 26 H 0.96996 * 119.99742 * 190.10993 * 7 6 4 27 27 H 1.08996 * 110.67221 * 1.33919 * 12 3 2 28 28 H 1.09007 * 110.48534 * 37.58329 * 13 12 3 29 29 H 1.08998 * 110.49050 * 274.93052 * 13 12 3 30 30 H 1.08996 * 110.03164 * 217.10777 * 14 13 12 31 31 H 1.08997 * 110.03491 * 95.67296 * 14 13 12 32 32 H 1.09003 * 110.02931 * 119.27866 * 15 14 13 33 33 H 1.08990 * 110.03339 * 240.71568 * 15 14 13 34 34 H 1.09003 * 110.48627 * 142.28833 * 16 15 14 35 35 H 1.08997 * 110.48466 * 264.92536 * 16 15 14 36 36 H 1.08998 * 110.48504 * 261.61652 * 17 2 1 37 37 H 1.08999 * 110.48656 * 24.13446 * 17 2 1 38 38 H 1.09004 * 110.75405 * 80.37273 * 18 17 2 39 39 H 1.09001 * 110.75326 * 203.73413 * 18 17 2 40 40 H 1.09002 * 110.48304 * 156.61965 * 19 18 17 41 41 H 1.08997 * 110.48352 * 279.12829 * 19 18 17 42 42 H 1.09008 * 109.46517 * 50.84644 * 21 20 2 43 43 H 1.08998 * 109.47494 * 170.83940 * 21 20 2 44 44 H 1.08997 * 109.47200 * 290.85039 * 21 20 2 45 45 H 0.96693 * 114.00491 * 184.91268 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0314 1.3765 0.0000 4 6 2.2356 2.0308 -1.1854 5 1 3.1194 2.6363 -1.3228 6 6 1.3068 1.9158 -2.2107 7 7 0.0460 1.6617 -1.9309 8 14 1.8464 2.1216 -3.9871 9 1 3.3044 2.3997 -4.0327 10 1 1.5560 0.8752 -4.7403 11 1 1.1075 3.2543 -4.6008 12 6 2.3145 2.0529 1.2683 13 6 3.7723 2.5754 1.2984 14 6 3.7407 3.7263 2.3251 15 6 2.2848 4.2210 2.3862 16 6 1.4826 3.3530 1.3948 17 6 2.0584 -0.7550 1.2372 18 6 3.3143 -1.4995 0.7200 19 6 2.8889 -1.9399 -0.7027 20 6 2.0580 -0.7534 -1.2333 21 6 0.8878 -1.2677 -2.0742 22 8 2.8832 0.1099 -2.0182 23 1 -0.3634 0.9750 0.3251 24 1 -0.3634 -0.2059 -1.0068 25 1 -0.3634 -0.7690 0.6818 26 1 -0.5728 1.4365 -2.6431 27 1 2.1221 1.3881 2.1103 28 1 4.0643 2.9481 0.3165 29 1 4.4525 1.7896 1.6270 30 1 4.3962 4.5343 2.0006 31 1 4.0526 3.3621 3.3040 32 1 1.8902 4.0967 3.3946 33 1 2.2340 5.2690 2.0913 34 1 0.4918 3.1351 1.7937 35 1 1.4046 3.8509 0.4283 36 1 2.3289 -0.0529 2.0258 37 1 1.3136 -1.4643 1.5981 38 1 4.1712 -0.8273 0.6764 39 1 3.5335 -2.3664 1.3435 40 1 3.7656 -2.1024 -1.3297 41 1 2.2812 -2.8435 -0.6565 42 1 0.1916 -0.4511 -2.2657 43 1 1.2634 -1.6546 -3.0214 44 1 0.3747 -2.0635 -1.5344 45 1 3.1859 -0.2829 -2.8483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313141903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:57 Heat of formation + Delta-G solvation = 12.149213 kcal Electronic energy + Delta-G solvation = -23856.497350 eV Core-core repulsion = 20876.153594 eV Total energy + Delta-G solvation = -2980.343756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.33679 -37.06098 -34.04213 -33.46822 -30.96128 -30.21541 -28.35512 -27.76666 -26.56158 -24.44069 -23.73588 -22.61582 -20.49766 -19.44145 -18.86782 -18.10881 -16.26265 -15.60906 -14.89393 -14.81898 -14.36188 -14.00978 -13.91897 -13.52071 -13.00951 -12.54350 -12.44447 -12.35079 -11.90567 -11.83429 -11.33034 -11.13290 -10.78283 -10.62364 -10.59689 -10.49785 -10.44148 -10.31652 -10.24829 -10.08784 -9.91002 -9.85552 -9.77313 -9.58829 -9.45589 -9.06429 -9.03757 -8.52393 -7.70093 -6.32066 -5.46243 -3.01232 3.50501 3.62106 3.66532 4.69358 5.18639 5.32744 5.42717 5.44687 5.48069 5.52503 5.58685 5.80839 5.88315 6.04114 6.12911 6.18014 6.26313 6.29068 6.31443 6.36080 6.38398 6.46855 6.47339 6.51113 6.59531 6.64100 6.69087 6.72326 6.82575 6.89393 6.92014 7.02927 7.08741 7.16523 7.25267 7.28686 7.36043 7.49275 7.63918 8.05540 8.15900 8.72206 8.95040 9.41362 10.05039 10.62034 11.39180 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.011467 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.734346 B = 2441.248857 C = 3231.567590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.231 3.769 3 N -0.562 5.562 4 C -0.171 4.171 5 H 0.052 0.948 6 C 0.038 3.962 7 N -0.879 5.879 8 Si 0.883 3.117 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.310 1.310 12 C 0.166 3.834 13 C -0.134 4.134 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.128 4.128 17 C -0.147 4.147 18 C -0.111 4.111 19 C -0.150 4.150 20 C 0.132 3.868 21 C -0.188 4.188 22 O -0.467 6.467 23 H 0.064 0.936 24 H 0.091 0.909 25 H -0.004 1.004 26 H 0.243 0.757 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.108 0.892 43 H 0.029 0.971 44 H 0.042 0.958 45 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.495 -3.869 5.433 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.143 3.857 3 N -0.281 5.281 4 C -0.299 4.299 5 H 0.069 0.931 6 C -0.160 4.160 7 N -0.524 5.524 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.240 1.240 12 C 0.058 3.942 13 C -0.173 4.173 14 C -0.159 4.159 15 C -0.161 4.161 16 C -0.167 4.167 17 C -0.185 4.185 18 C -0.148 4.148 19 C -0.188 4.188 20 C 0.090 3.910 21 C -0.245 4.245 22 O -0.272 6.272 23 H 0.083 0.917 24 H 0.110 0.890 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.048 0.952 44 H 0.061 0.939 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.242 -3.369 5.829 7.472 hybrid contribution 0.344 -0.635 -1.533 1.694 sum 3.586 -4.004 4.296 6.881 Atomic orbital electron populations 1.22866 0.96029 0.99557 1.02222 1.20272 0.92714 0.83800 0.88936 1.43777 1.75928 1.07603 1.00750 1.18417 0.99044 1.23341 0.89147 0.93063 1.24937 0.93564 0.99236 0.98215 1.70515 1.01351 1.49806 1.30773 0.86733 0.78140 0.75931 0.87789 1.20645 1.22395 1.23955 1.21439 0.91562 0.91701 0.89460 1.22718 0.99500 0.96254 0.98839 1.22054 0.96610 0.98434 0.98776 1.22090 0.95746 0.99226 0.99086 1.22702 0.97392 0.97573 0.99049 1.23189 0.96891 0.98937 0.99493 1.22290 0.98414 0.98557 0.95572 1.23158 0.99622 0.98728 0.97338 1.21952 0.88877 0.88241 0.91899 1.22963 1.01283 1.02175 0.98074 1.88373 1.68838 1.37130 1.32902 0.91671 0.89045 0.98470 0.94638 0.92166 0.90899 0.93625 0.93135 0.93273 0.93343 0.93126 0.93487 0.90284 0.90888 0.92668 0.91591 0.93428 0.92550 0.92597 0.87406 0.95228 0.93873 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 7.07 37.16 0.26 -3.04 16 2 C 0.23 4.91 0.75 -130.71 -0.10 4.82 16 3 N -0.56 -12.73 2.26 -147.51 -0.33 -13.06 16 4 C -0.17 -4.31 5.20 -15.06 -0.08 -4.39 16 5 H 0.05 1.38 6.58 -52.48 -0.35 1.04 16 6 C 0.04 0.99 3.09 -17.43 -0.05 0.93 16 7 N -0.88 -23.08 8.18 55.49 0.45 -22.62 16 8 Si 0.88 21.50 27.39 -169.99 -4.66 16.84 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 12 C 0.17 3.36 2.92 -65.95 -0.19 3.17 16 13 C -0.13 -2.50 6.36 -25.07 -0.16 -2.66 16 14 C -0.12 -1.93 6.80 -25.61 -0.17 -2.11 16 15 C -0.12 -2.04 6.80 -25.61 -0.17 -2.21 16 16 C -0.13 -2.56 6.38 -25.08 -0.16 -2.72 16 17 C -0.15 -2.72 5.78 -25.07 -0.14 -2.86 16 18 C -0.11 -1.90 6.91 -24.74 -0.17 -2.07 16 19 C -0.15 -2.65 6.09 -25.07 -0.15 -2.80 16 20 C 0.13 2.71 0.87 -89.50 -0.08 2.63 16 21 C -0.19 -3.80 7.15 37.16 0.27 -3.53 16 22 O -0.47 -10.42 6.26 -35.23 -0.22 -10.64 16 23 H 0.06 1.62 7.48 -51.92 -0.39 1.23 16 24 H 0.09 2.12 3.28 -51.93 -0.17 1.95 16 25 H 0.00 -0.07 7.22 -51.93 -0.38 -0.45 16 26 H 0.24 6.34 7.96 -40.82 -0.33 6.01 16 27 H 0.06 1.19 5.30 -51.93 -0.28 0.91 16 28 H 0.07 1.53 6.37 -51.93 -0.33 1.20 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.83 7.23 -51.93 -0.38 1.46 16 36 H 0.07 1.34 4.92 -51.93 -0.26 1.08 16 37 H 0.05 0.96 7.32 -51.93 -0.38 0.58 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 41 H 0.06 0.92 7.70 -51.93 -0.40 0.52 16 42 H 0.11 2.46 3.64 -51.92 -0.19 2.27 16 43 H 0.03 0.56 8.12 -51.93 -0.42 0.13 16 44 H 0.04 0.79 7.67 -51.93 -0.40 0.40 16 45 H 0.29 5.91 8.40 45.56 0.38 6.29 16 LS Contribution 310.00 15.07 4.67 4.67 Total: -1.00 -25.99 310.00 -8.04 -34.03 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.84 Total: 7.62 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -1.11 Total: -16.84 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.12 Total: -35.68 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.22 Total: -10.64 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.66 Total: 16.84 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.99 -8.04 -34.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.180 kcal (2) G-P(sol) polarization free energy of solvation -25.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds