Wall clock time and date at job start Mon Mar 30 2020 07:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 110.01582 * 2 1 4 4 C 1.36935 * 120.00130 * 271.55150 * 3 2 1 5 5 H 1.08006 * 119.99905 * 222.05968 * 4 3 2 6 6 C 1.38815 * 120.00097 * 42.05632 * 4 3 2 7 7 N 1.31622 * 119.99716 * 26.87001 * 6 4 3 8 8 Si 1.86793 * 119.99970 * 206.87280 * 6 4 3 9 9 H 1.48501 * 109.47531 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47459 * 120.00121 * 8 6 4 11 11 H 1.48509 * 109.47005 * 240.00078 * 8 6 4 12 12 C 1.46507 * 119.99882 * 91.55594 * 3 2 1 13 13 C 1.54887 * 110.75603 * 124.77434 * 12 3 2 14 14 C 1.54268 * 104.19434 * 156.25543 * 13 12 3 15 15 C 1.53883 * 106.59893 * 336.38882 * 14 13 12 16 16 C 1.54269 * 106.59542 * 0.02562 * 15 14 13 17 17 C 1.54269 * 110.02783 * 121.39311 * 2 1 3 18 18 C 1.54895 * 104.19124 * 142.94170 * 17 2 1 19 19 C 1.54887 * 102.74864 * 322.05525 * 18 17 2 20 20 C 1.53866 * 110.06964 * 238.58215 * 2 1 3 21 21 C 1.53002 * 110.03785 * 359.97438 * 20 2 1 22 22 O 1.42902 * 110.03442 * 121.40917 * 20 2 1 23 23 H 1.09007 * 109.47109 * 341.55784 * 1 2 3 24 24 H 1.09000 * 109.47551 * 101.55564 * 1 2 3 25 25 H 1.09002 * 109.47481 * 221.55995 * 1 2 3 26 26 H 0.96996 * 119.99742 * 190.10993 * 7 6 4 27 27 H 1.08996 * 110.67221 * 1.33919 * 12 3 2 28 28 H 1.09007 * 110.48534 * 37.58329 * 13 12 3 29 29 H 1.08998 * 110.49050 * 274.93052 * 13 12 3 30 30 H 1.08996 * 110.03164 * 217.10777 * 14 13 12 31 31 H 1.08997 * 110.03491 * 95.67296 * 14 13 12 32 32 H 1.09003 * 110.02931 * 119.27866 * 15 14 13 33 33 H 1.08990 * 110.03339 * 240.71568 * 15 14 13 34 34 H 1.09003 * 110.48627 * 142.28833 * 16 15 14 35 35 H 1.08997 * 110.48466 * 264.92536 * 16 15 14 36 36 H 1.08998 * 110.48504 * 261.61652 * 17 2 1 37 37 H 1.08999 * 110.48656 * 24.13446 * 17 2 1 38 38 H 1.09004 * 110.75405 * 80.37273 * 18 17 2 39 39 H 1.09001 * 110.75326 * 203.73413 * 18 17 2 40 40 H 1.09002 * 110.48304 * 156.61965 * 19 18 17 41 41 H 1.08997 * 110.48352 * 279.12829 * 19 18 17 42 42 H 1.09008 * 109.46517 * 50.84644 * 21 20 2 43 43 H 1.08998 * 109.47494 * 170.83940 * 21 20 2 44 44 H 1.08997 * 109.47200 * 290.85039 * 21 20 2 45 45 H 0.96693 * 114.00491 * 184.91268 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0314 1.3765 0.0000 4 6 2.2356 2.0308 -1.1854 5 1 3.1194 2.6363 -1.3228 6 6 1.3068 1.9158 -2.2107 7 7 0.0460 1.6617 -1.9309 8 14 1.8464 2.1216 -3.9871 9 1 3.3044 2.3997 -4.0327 10 1 1.5560 0.8752 -4.7403 11 1 1.1075 3.2543 -4.6008 12 6 2.3145 2.0529 1.2683 13 6 3.7723 2.5754 1.2984 14 6 3.7407 3.7263 2.3251 15 6 2.2848 4.2210 2.3862 16 6 1.4826 3.3530 1.3948 17 6 2.0584 -0.7550 1.2372 18 6 3.3143 -1.4995 0.7200 19 6 2.8889 -1.9399 -0.7027 20 6 2.0580 -0.7534 -1.2333 21 6 0.8878 -1.2677 -2.0742 22 8 2.8832 0.1099 -2.0182 23 1 -0.3634 0.9750 0.3251 24 1 -0.3634 -0.2059 -1.0068 25 1 -0.3634 -0.7690 0.6818 26 1 -0.5728 1.4365 -2.6431 27 1 2.1221 1.3881 2.1103 28 1 4.0643 2.9481 0.3165 29 1 4.4525 1.7896 1.6270 30 1 4.3962 4.5343 2.0006 31 1 4.0526 3.3621 3.3040 32 1 1.8902 4.0967 3.3946 33 1 2.2340 5.2690 2.0913 34 1 0.4918 3.1351 1.7937 35 1 1.4046 3.8509 0.4283 36 1 2.3289 -0.0529 2.0258 37 1 1.3136 -1.4643 1.5981 38 1 4.1712 -0.8273 0.6764 39 1 3.5335 -2.3664 1.3435 40 1 3.7656 -2.1024 -1.3297 41 1 2.2812 -2.8435 -0.6565 42 1 0.1916 -0.4511 -2.2657 43 1 1.2634 -1.6546 -3.0214 44 1 0.3747 -2.0635 -1.5344 45 1 3.1859 -0.2829 -2.8483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313141903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:56 Heat of formation + Delta-G solvation = -1.788367 kcal Electronic energy + Delta-G solvation = -23857.101729 eV Core-core repulsion = 20876.153594 eV Total energy + Delta-G solvation = -2980.948135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94732 -38.58527 -35.69255 -35.18025 -32.72357 -31.86045 -29.95355 -29.27177 -28.19698 -25.99517 -25.52446 -24.25852 -21.99467 -20.84604 -20.51782 -19.80707 -17.94490 -17.29176 -16.60721 -16.37350 -15.99524 -15.70776 -15.52301 -15.11173 -14.58330 -14.21564 -14.03654 -13.90488 -13.62361 -13.41308 -13.05242 -12.72990 -12.58745 -12.31044 -12.27200 -12.13749 -11.98441 -11.84136 -11.74980 -11.71601 -11.60925 -11.49008 -11.35580 -11.09961 -11.04412 -10.73279 -10.69653 -10.21664 -9.58730 -8.18283 -7.39297 -4.96438 1.50452 1.59565 1.66343 2.77110 3.52726 3.55649 3.84300 3.95311 4.07541 4.09240 4.11862 4.34716 4.39147 4.52245 4.61014 4.64573 4.81280 4.82577 4.87221 4.93250 4.98402 4.99280 5.03733 5.08060 5.09421 5.19738 5.23473 5.27631 5.30054 5.34618 5.38932 5.41714 5.56538 5.64033 5.64887 5.68626 5.72892 5.81139 5.89115 6.02994 6.37033 6.76640 7.31604 7.56479 8.19848 8.72095 9.40678 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.011467 C = 0.008662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.734346 B = 2441.248857 C = 3231.567590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.218 3.782 3 N -0.570 5.570 4 C -0.158 4.158 5 H 0.028 0.972 6 C 0.013 3.987 7 N -0.894 5.894 8 Si 0.917 3.083 9 H -0.285 1.285 10 H -0.294 1.294 11 H -0.330 1.330 12 C 0.158 3.842 13 C -0.127 4.127 14 C -0.113 4.113 15 C -0.115 4.115 16 C -0.125 4.125 17 C -0.142 4.142 18 C -0.103 4.103 19 C -0.144 4.144 20 C 0.124 3.876 21 C -0.184 4.184 22 O -0.490 6.490 23 H 0.029 0.971 24 H 0.081 0.919 25 H 0.015 0.985 26 H 0.236 0.764 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.059 0.941 45 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.707 -5.368 7.328 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.130 3.870 3 N -0.289 5.289 4 C -0.288 4.288 5 H 0.046 0.954 6 C -0.183 4.183 7 N -0.542 5.542 8 Si 0.751 3.249 9 H -0.210 1.210 10 H -0.221 1.221 11 H -0.261 1.261 12 C 0.052 3.948 13 C -0.166 4.166 14 C -0.151 4.151 15 C -0.154 4.154 16 C -0.165 4.165 17 C -0.180 4.180 18 C -0.140 4.140 19 C -0.181 4.181 20 C 0.083 3.917 21 C -0.241 4.241 22 O -0.296 6.296 23 H 0.048 0.952 24 H 0.099 0.901 25 H 0.033 0.967 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.468 -4.875 7.738 10.179 hybrid contribution -0.041 -0.168 -2.121 2.128 sum 4.427 -5.043 5.617 8.751 Atomic orbital electron populations 1.22724 0.97182 0.97960 1.01872 1.20431 0.91955 0.83580 0.91043 1.43882 1.75810 1.08476 1.00732 1.18201 0.97713 1.22567 0.90314 0.95428 1.25099 0.93656 1.00297 0.99247 1.70592 1.01619 1.51468 1.30480 0.86201 0.77153 0.75033 0.86560 1.21047 1.22079 1.26117 1.21632 0.92546 0.91783 0.88888 1.22589 0.98294 0.97496 0.98261 1.22022 0.96313 0.97585 0.99164 1.22041 0.95543 0.98710 0.99064 1.22585 0.97713 0.98168 0.98015 1.23114 0.97867 0.99018 0.97995 1.22244 0.97005 0.99198 0.95602 1.23075 0.99627 0.97864 0.97576 1.22060 0.89197 0.88990 0.91487 1.22871 1.00838 1.01643 0.98729 1.88196 1.69169 1.38714 1.33534 0.95205 0.90073 0.96652 0.95354 0.90862 0.93945 0.92690 0.92181 0.90591 0.91011 0.92566 0.94482 0.94370 0.90805 0.91174 0.92959 0.90294 0.91754 0.90759 0.90108 0.94526 0.92232 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 7.07 71.98 0.51 -5.64 16 2 C 0.22 9.03 0.75 4.33 0.00 9.04 16 3 N -0.57 -25.91 2.26 -620.61 -1.40 -27.31 16 4 C -0.16 -8.17 5.20 84.03 0.44 -7.74 16 5 H 0.03 1.57 6.58 -2.91 -0.02 1.55 16 6 C 0.01 0.68 3.09 84.86 0.26 0.94 16 7 N -0.89 -48.44 8.18 21.65 0.18 -48.26 16 8 Si 0.92 45.30 27.39 68.60 1.88 47.18 16 9 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.33 -17.29 7.11 99.48 0.71 -16.58 16 12 C 0.16 6.32 2.92 46.27 0.14 6.45 16 13 C -0.13 -4.61 6.36 31.67 0.20 -4.41 16 14 C -0.11 -3.32 6.80 31.32 0.21 -3.10 16 15 C -0.12 -3.59 6.80 31.32 0.21 -3.38 16 16 C -0.13 -5.06 6.38 31.66 0.20 -4.85 16 17 C -0.14 -4.84 5.78 31.67 0.18 -4.65 16 18 C -0.10 -3.15 6.91 31.89 0.22 -2.93 16 19 C -0.14 -4.58 6.09 31.67 0.19 -4.39 16 20 C 0.12 4.90 0.87 -10.07 -0.01 4.90 16 21 C -0.18 -7.20 7.15 71.98 0.51 -6.69 16 22 O -0.49 -21.64 6.26 -148.98 -0.93 -22.58 16 23 H 0.03 1.49 7.48 -2.38 -0.02 1.47 16 24 H 0.08 3.78 3.28 -2.39 -0.01 3.77 16 25 H 0.01 0.58 7.22 -2.39 -0.02 0.57 16 26 H 0.24 12.76 7.96 -92.71 -0.74 12.02 16 27 H 0.07 2.75 5.30 -2.39 -0.01 2.74 16 28 H 0.04 1.79 6.37 -2.38 -0.02 1.77 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.04 1.83 7.23 -2.39 -0.02 1.81 16 36 H 0.07 2.49 4.92 -2.39 -0.01 2.48 16 37 H 0.07 2.18 7.32 -2.39 -0.02 2.16 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 41 H 0.07 2.12 7.70 -2.39 -0.02 2.10 16 42 H 0.08 3.70 3.64 -2.38 -0.01 3.69 16 43 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 44 H 0.06 2.08 7.67 -2.39 -0.02 2.06 16 45 H 0.30 12.09 8.40 -74.06 -0.62 11.47 16 Total: -1.00 -57.20 310.00 3.38 -53.82 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.38 Total: 23.61 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 3.28 Total: -26.45 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.23 Total: -75.57 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.93 Total: -22.58 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.18 kcal Total: -57.20 3.38 -53.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.028 kcal (2) G-P(sol) polarization free energy of solvation -57.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds