Wall clock time and date at job start Mon Mar 30 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 110.05916 * 2 1 4 4 C 1.54377 * 110.07146 * 121.45869 * 2 1 3 5 5 C 1.54887 * 104.21583 * 142.84790 * 4 2 1 6 6 C 1.54890 * 102.75260 * 322.07677 * 5 4 2 7 7 C 1.53875 * 110.03559 * 238.58157 * 2 1 3 8 8 C 1.53005 * 110.02911 * 0.04900 * 7 2 1 9 9 N 1.46505 * 110.03238 * 121.42781 * 7 2 1 10 10 C 1.36938 * 119.99677 * 125.06121 * 9 7 2 11 11 H 1.07998 * 119.99782 * 240.75876 * 10 9 7 12 12 C 1.38811 * 120.00235 * 61.03753 * 10 9 7 13 13 N 1.31624 * 119.99828 * 8.56847 * 12 10 9 14 14 Si 1.86796 * 120.00203 * 188.56746 * 12 10 9 15 15 H 1.48502 * 109.47099 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47126 * 119.99724 * 14 12 10 17 17 H 1.48494 * 109.47606 * 240.00119 * 14 12 10 18 18 C 1.46499 * 120.00030 * 305.05989 * 9 7 2 19 19 C 1.54262 * 110.03258 * 242.98011 * 18 9 7 20 20 C 1.54969 * 104.16323 * 217.14089 * 19 18 9 21 21 C 1.54891 * 102.77425 * 37.88419 * 20 19 18 22 22 C 1.53872 * 110.02959 * 125.76346 * 18 9 7 23 23 H 1.09002 * 109.47363 * 181.42057 * 1 2 3 24 24 H 1.09001 * 109.47256 * 301.41879 * 1 2 3 25 25 H 1.08996 * 109.47059 * 61.41749 * 1 2 3 26 26 H 0.96701 * 113.99827 * 58.58150 * 3 2 1 27 27 H 1.08996 * 110.45958 * 24.17064 * 4 2 1 28 28 H 1.08998 * 110.60393 * 261.59409 * 4 2 1 29 29 H 1.09005 * 110.75894 * 203.76057 * 5 4 2 30 30 H 1.09004 * 110.91660 * 80.46845 * 5 4 2 31 31 H 1.09001 * 110.48065 * 279.26777 * 6 5 4 32 32 H 1.08995 * 110.60196 * 156.67559 * 6 5 4 33 33 H 1.09000 * 109.47087 * 180.68683 * 8 7 2 34 34 H 1.08994 * 109.47216 * 300.69012 * 8 7 2 35 35 H 1.09006 * 109.46945 * 60.69296 * 8 7 2 36 36 H 0.96997 * 119.99928 * 184.98209 * 13 12 10 37 37 H 1.08996 * 110.01810 * 4.37386 * 18 9 7 38 38 H 1.09006 * 110.48808 * 335.78266 * 19 18 9 39 39 H 1.09003 * 110.49114 * 98.42649 * 19 18 9 40 40 H 1.09001 * 110.71467 * 279.57607 * 20 19 18 41 41 H 1.08997 * 110.77048 * 156.22063 * 20 19 18 42 42 H 1.08998 * 110.48398 * 203.40690 * 21 20 19 43 43 H 1.09000 * 110.48715 * 80.76957 * 21 20 19 44 44 H 1.08998 * 110.03187 * 238.56567 * 22 18 9 45 45 H 1.08999 * 110.03752 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0597 -0.7567 1.2369 5 6 3.3143 -1.5023 0.7181 6 6 2.8872 -1.9413 -0.7046 7 6 2.0571 -0.7536 -1.2337 8 6 0.8861 -1.2659 -2.0747 9 7 2.9033 0.1311 -2.0384 10 6 4.1819 -0.2446 -2.3534 11 1 5.0174 0.3563 -2.0260 12 6 4.4038 -1.3947 -3.0983 13 7 3.3893 -2.0310 -3.6445 14 14 6.1422 -2.0394 -3.3257 15 1 7.0967 -1.1500 -2.6162 16 1 6.2379 -3.4124 -2.7682 17 1 6.4742 -2.0684 -4.7727 18 6 2.3816 1.4177 -2.5062 19 6 2.3362 1.4404 -4.0480 20 6 2.7268 2.8938 -4.4175 21 6 3.8186 3.2313 -3.3719 22 6 3.3234 2.5560 -2.0763 23 1 -0.3634 -1.0273 0.0255 24 1 -0.3634 0.5357 0.8770 25 1 -0.3633 0.4916 -0.9024 26 1 1.7224 1.8697 0.7539 27 1 1.3154 -1.4670 1.5967 28 1 2.3315 -0.0571 2.0273 29 1 3.5331 -2.3699 1.3407 30 1 4.1740 -0.8336 0.6742 31 1 2.2764 -2.8430 -0.6582 32 1 3.7617 -2.1060 -1.3339 33 1 1.2695 -1.8083 -2.9390 34 1 0.2698 -1.9324 -1.4716 35 1 0.2850 -0.4218 -2.4129 36 1 3.5352 -2.8729 -4.1035 37 1 1.3838 1.5853 -2.1008 38 1 3.0572 0.7350 -4.4614 39 1 1.3313 1.2125 -4.4035 40 1 1.8717 3.5615 -4.3123 41 1 3.1324 2.9400 -5.4281 42 1 3.8950 4.3099 -3.2348 43 1 4.7793 2.8155 -3.6756 44 1 2.7824 3.2766 -1.4630 45 1 4.1684 2.1514 -1.5192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313141905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:59 Heat of formation + Delta-G solvation = -29.860633 kcal Electronic energy + Delta-G solvation = -23722.576666 eV Core-core repulsion = 20740.411226 eV Total energy + Delta-G solvation = -2982.165439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.26352 -36.80913 -34.71343 -32.88610 -31.27083 -30.11009 -28.43177 -27.49175 -26.21333 -24.67243 -23.82474 -22.43684 -20.08702 -19.59506 -18.69669 -17.98820 -16.29021 -15.33671 -15.25410 -14.58934 -14.46173 -14.19805 -13.85190 -13.13702 -12.94858 -12.72600 -12.65078 -12.21976 -11.83307 -11.72000 -11.28724 -11.11623 -10.98500 -10.86187 -10.63192 -10.54031 -10.26631 -10.15317 -10.10554 -9.98571 -9.96479 -9.86561 -9.62747 -9.52525 -9.45591 -9.29513 -9.02689 -8.77525 -8.01179 -6.06391 -5.46069 -3.51671 3.34931 3.45465 3.48658 4.49816 4.94302 5.32243 5.40023 5.49994 5.59077 5.69744 5.77331 5.81652 5.88515 5.99151 6.06525 6.11073 6.34889 6.36446 6.44452 6.47335 6.54085 6.55116 6.65837 6.69883 6.74152 6.75914 6.78461 6.90235 6.94748 7.00295 7.04296 7.11039 7.25625 7.28005 7.34450 7.37436 7.64936 7.76959 7.85159 7.85978 8.05716 8.49185 8.88276 9.48206 9.94807 10.73342 11.28849 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.012530 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.372093 B = 2234.100753 C = 3311.575979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 O -0.524 6.524 4 C -0.144 4.144 5 C -0.116 4.116 6 C -0.116 4.116 7 C 0.236 3.764 8 C -0.157 4.157 9 N -0.553 5.553 10 C -0.246 4.246 11 H 0.046 0.954 12 C 0.036 3.964 13 N -0.875 5.875 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.203 3.797 19 C -0.133 4.133 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.110 4.110 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.060 0.940 26 H 0.344 0.656 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.022 0.978 35 H 0.030 0.970 36 H 0.251 0.749 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 4.036 5.700 8.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.064 3.936 3 O -0.326 6.326 4 C -0.182 4.182 5 C -0.154 4.154 6 C -0.153 4.153 7 C 0.147 3.853 8 C -0.216 4.216 9 N -0.273 5.273 10 C -0.377 4.377 11 H 0.063 0.937 12 C -0.166 4.166 13 N -0.515 5.515 14 Si 0.705 3.295 15 H -0.199 1.199 16 H -0.215 1.215 17 H -0.215 1.215 18 C 0.096 3.904 19 C -0.172 4.172 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.149 4.149 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.079 0.921 26 H 0.188 0.812 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.972 3.686 4.977 7.357 hybrid contribution 0.442 -0.337 0.460 0.722 sum -3.529 3.349 5.437 7.296 Atomic orbital electron populations 1.22610 0.97621 1.01717 1.00790 1.22700 0.90618 0.83175 0.97118 1.86982 1.75099 1.22617 1.47921 1.23026 0.98460 0.99300 0.97380 1.22381 0.97193 0.98392 0.97440 1.22706 1.02348 0.95387 0.94850 1.20056 0.90202 0.88769 0.86256 1.22553 0.97357 0.99415 1.02235 1.43409 1.11020 1.15871 1.56952 1.18610 0.84104 1.08237 1.26771 0.93664 1.25681 0.95744 1.00358 0.94769 1.69945 1.29305 1.15987 1.36235 0.86670 0.86356 0.78768 0.77688 1.19935 1.21480 1.21526 1.20664 0.94039 0.85990 0.89751 1.22917 0.99995 0.94587 0.99750 1.22445 0.97717 0.98440 0.97621 1.22306 0.98613 0.97849 0.97092 1.22289 1.00268 0.97196 0.95135 0.92041 0.94329 0.92072 0.81212 0.92527 0.92837 0.93811 0.91383 0.94393 0.86732 0.88450 0.95915 0.95105 0.93857 0.93588 0.89515 0.94621 0.93403 0.93502 0.94131 0.92341 0.94366 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 7.54 37.15 0.28 -2.41 16 2 C 0.11 1.92 1.02 -89.45 -0.09 1.83 16 3 O -0.52 -9.40 8.27 -35.23 -0.29 -9.69 16 4 C -0.14 -2.41 6.10 -25.01 -0.15 -2.56 16 5 C -0.12 -2.21 6.91 -24.74 -0.17 -2.38 16 6 C -0.12 -2.52 5.06 -25.07 -0.13 -2.64 16 7 C 0.24 5.02 0.56 -130.70 -0.07 4.94 16 8 C -0.16 -3.35 7.19 37.16 0.27 -3.09 16 9 N -0.55 -12.71 1.74 -148.47 -0.26 -12.97 16 10 C -0.25 -6.22 6.39 -15.06 -0.10 -6.32 16 11 H 0.05 1.23 6.99 -52.49 -0.37 0.86 16 12 C 0.04 0.92 3.17 -17.43 -0.06 0.86 16 13 N -0.87 -22.95 10.46 55.49 0.58 -22.37 16 14 Si 0.88 20.58 29.52 -169.99 -5.02 15.56 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.20 4.35 1.80 -66.82 -0.12 4.23 16 19 C -0.13 -2.88 6.43 -25.03 -0.16 -3.04 16 20 C -0.12 -2.29 6.91 -24.69 -0.17 -2.46 16 21 C -0.12 -2.24 6.83 -25.07 -0.17 -2.41 16 22 C -0.11 -2.20 4.94 -25.61 -0.13 -2.32 16 23 H 0.06 0.96 6.70 -51.93 -0.35 0.61 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.02 6.70 -51.93 -0.35 0.68 16 26 H 0.34 4.81 9.07 45.56 0.41 5.22 16 27 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 28 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.04 0.80 7.84 -51.93 -0.41 0.40 16 32 H 0.11 2.83 4.01 -51.93 -0.21 2.62 16 33 H 0.10 2.38 6.06 -51.93 -0.31 2.07 16 34 H 0.02 0.43 6.68 -51.93 -0.35 0.09 16 35 H 0.03 0.64 6.30 -51.93 -0.33 0.31 16 36 H 0.25 6.51 8.32 -40.82 -0.34 6.17 16 37 H 0.05 1.00 6.41 -51.93 -0.33 0.67 16 38 H 0.09 2.19 7.19 -51.93 -0.37 1.81 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 0.71 7.92 -51.93 -0.41 0.30 16 45 H 0.07 1.50 6.64 -51.93 -0.34 1.16 16 LS Contribution 320.00 15.07 4.82 4.82 Total: -1.00 -25.91 320.00 -8.19 -34.10 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.06 Total: 8.30 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.97 Total: -17.76 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.32 Total: -35.34 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.29 Total: -9.69 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -25.91 -8.19 -34.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.244 kcal (2) G-P(sol) polarization free energy of solvation -25.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds