Wall clock time and date at job start Mon Mar 30 2020 07:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 110.05916 * 2 1 4 4 C 1.54377 * 110.07146 * 121.45869 * 2 1 3 5 5 C 1.54887 * 104.21583 * 142.84790 * 4 2 1 6 6 C 1.54890 * 102.75260 * 322.07677 * 5 4 2 7 7 C 1.53875 * 110.03559 * 238.58157 * 2 1 3 8 8 C 1.53005 * 110.02911 * 0.04900 * 7 2 1 9 9 N 1.46505 * 110.03238 * 121.42781 * 7 2 1 10 10 C 1.36938 * 119.99677 * 125.06121 * 9 7 2 11 11 H 1.07998 * 119.99782 * 240.75876 * 10 9 7 12 12 C 1.38811 * 120.00235 * 61.03753 * 10 9 7 13 13 N 1.31624 * 119.99828 * 8.56847 * 12 10 9 14 14 Si 1.86796 * 120.00203 * 188.56746 * 12 10 9 15 15 H 1.48502 * 109.47099 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47126 * 119.99724 * 14 12 10 17 17 H 1.48494 * 109.47606 * 240.00119 * 14 12 10 18 18 C 1.46499 * 120.00030 * 305.05989 * 9 7 2 19 19 C 1.54262 * 110.03258 * 242.98011 * 18 9 7 20 20 C 1.54969 * 104.16323 * 217.14089 * 19 18 9 21 21 C 1.54891 * 102.77425 * 37.88419 * 20 19 18 22 22 C 1.53872 * 110.02959 * 125.76346 * 18 9 7 23 23 H 1.09002 * 109.47363 * 181.42057 * 1 2 3 24 24 H 1.09001 * 109.47256 * 301.41879 * 1 2 3 25 25 H 1.08996 * 109.47059 * 61.41749 * 1 2 3 26 26 H 0.96701 * 113.99827 * 58.58150 * 3 2 1 27 27 H 1.08996 * 110.45958 * 24.17064 * 4 2 1 28 28 H 1.08998 * 110.60393 * 261.59409 * 4 2 1 29 29 H 1.09005 * 110.75894 * 203.76057 * 5 4 2 30 30 H 1.09004 * 110.91660 * 80.46845 * 5 4 2 31 31 H 1.09001 * 110.48065 * 279.26777 * 6 5 4 32 32 H 1.08995 * 110.60196 * 156.67559 * 6 5 4 33 33 H 1.09000 * 109.47087 * 180.68683 * 8 7 2 34 34 H 1.08994 * 109.47216 * 300.69012 * 8 7 2 35 35 H 1.09006 * 109.46945 * 60.69296 * 8 7 2 36 36 H 0.96997 * 119.99928 * 184.98209 * 13 12 10 37 37 H 1.08996 * 110.01810 * 4.37386 * 18 9 7 38 38 H 1.09006 * 110.48808 * 335.78266 * 19 18 9 39 39 H 1.09003 * 110.49114 * 98.42649 * 19 18 9 40 40 H 1.09001 * 110.71467 * 279.57607 * 20 19 18 41 41 H 1.08997 * 110.77048 * 156.22063 * 20 19 18 42 42 H 1.08998 * 110.48398 * 203.40690 * 21 20 19 43 43 H 1.09000 * 110.48715 * 80.76957 * 21 20 19 44 44 H 1.08998 * 110.03187 * 238.56567 * 22 18 9 45 45 H 1.08999 * 110.03752 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0201 1.3423 0.0000 4 6 2.0597 -0.7567 1.2369 5 6 3.3143 -1.5023 0.7181 6 6 2.8872 -1.9413 -0.7046 7 6 2.0571 -0.7536 -1.2337 8 6 0.8861 -1.2659 -2.0747 9 7 2.9033 0.1311 -2.0384 10 6 4.1819 -0.2446 -2.3534 11 1 5.0174 0.3563 -2.0260 12 6 4.4038 -1.3947 -3.0983 13 7 3.3893 -2.0310 -3.6445 14 14 6.1422 -2.0394 -3.3257 15 1 7.0967 -1.1500 -2.6162 16 1 6.2379 -3.4124 -2.7682 17 1 6.4742 -2.0684 -4.7727 18 6 2.3816 1.4177 -2.5062 19 6 2.3362 1.4404 -4.0480 20 6 2.7268 2.8938 -4.4175 21 6 3.8186 3.2313 -3.3719 22 6 3.3234 2.5560 -2.0763 23 1 -0.3634 -1.0273 0.0255 24 1 -0.3634 0.5357 0.8770 25 1 -0.3633 0.4916 -0.9024 26 1 1.7224 1.8697 0.7539 27 1 1.3154 -1.4670 1.5967 28 1 2.3315 -0.0571 2.0273 29 1 3.5331 -2.3699 1.3407 30 1 4.1740 -0.8336 0.6742 31 1 2.2764 -2.8430 -0.6582 32 1 3.7617 -2.1060 -1.3339 33 1 1.2695 -1.8083 -2.9390 34 1 0.2698 -1.9324 -1.4716 35 1 0.2850 -0.4218 -2.4129 36 1 3.5352 -2.8729 -4.1035 37 1 1.3838 1.5853 -2.1008 38 1 3.0572 0.7350 -4.4614 39 1 1.3313 1.2125 -4.4035 40 1 1.8717 3.5615 -4.3123 41 1 3.1324 2.9400 -5.4281 42 1 3.8950 4.3099 -3.2348 43 1 4.7793 2.8155 -3.6756 44 1 2.7824 3.2766 -1.4630 45 1 4.1684 2.1514 -1.5192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313141905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:59 Heat of formation + Delta-G solvation = -43.550458 kcal Electronic energy + Delta-G solvation = -23723.170301 eV Core-core repulsion = 20740.411226 eV Total energy + Delta-G solvation = -2982.759075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81978 -38.40831 -36.28269 -34.55575 -32.99406 -31.71148 -29.96832 -29.13350 -27.96093 -26.17994 -25.56695 -24.06642 -21.63188 -21.14885 -20.42241 -19.65623 -17.92715 -17.08068 -16.77523 -16.31158 -16.12363 -15.69979 -15.52608 -14.72339 -14.42144 -14.35252 -14.17298 -13.89341 -13.45804 -13.33106 -12.93052 -12.85785 -12.70711 -12.56336 -12.20370 -12.13585 -11.98178 -11.83378 -11.66648 -11.60785 -11.56679 -11.54554 -11.29992 -11.16503 -11.05685 -10.92765 -10.57316 -10.30864 -9.95522 -8.01397 -7.32978 -5.49336 1.41361 1.48637 1.54798 2.55232 3.39185 3.52385 3.96335 4.01186 4.08550 4.17412 4.22691 4.29562 4.44714 4.59447 4.67275 4.76799 4.83411 4.91864 4.94011 4.98744 5.00338 5.03925 5.09096 5.12332 5.16664 5.20793 5.28779 5.32906 5.39564 5.41093 5.42852 5.54463 5.58374 5.60494 5.68810 5.76813 5.86877 5.97055 6.03049 6.09177 6.18384 6.85066 7.30743 7.54632 8.17019 8.81767 9.30087 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.012530 C = 0.008453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.372093 B = 2234.100753 C = 3311.575979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.110 3.890 3 O -0.542 6.542 4 C -0.134 4.134 5 C -0.113 4.113 6 C -0.121 4.121 7 C 0.224 3.776 8 C -0.146 4.146 9 N -0.560 5.560 10 C -0.239 4.239 11 H 0.024 0.976 12 C 0.008 3.992 13 N -0.891 5.891 14 Si 0.918 3.082 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.296 1.296 18 C 0.202 3.798 19 C -0.132 4.132 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.099 4.099 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.365 0.635 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.028 0.972 36 H 0.245 0.755 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.057 0.943 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 5.489 7.364 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 O -0.346 6.346 4 C -0.172 4.172 5 C -0.150 4.150 6 C -0.158 4.158 7 C 0.136 3.864 8 C -0.205 4.205 9 N -0.280 5.280 10 C -0.371 4.371 11 H 0.041 0.959 12 C -0.191 4.191 13 N -0.532 5.532 14 Si 0.747 3.253 15 H -0.200 1.200 16 H -0.215 1.215 17 H -0.223 1.223 18 C 0.096 3.904 19 C -0.172 4.172 20 C -0.152 4.152 21 C -0.155 4.155 22 C -0.138 4.138 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.211 0.789 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.152 5.153 6.661 9.873 hybrid contribution 0.807 -0.782 -0.059 1.125 sum -4.345 4.371 6.602 9.032 Atomic orbital electron populations 1.22494 0.95585 1.02232 1.01640 1.22466 0.91988 0.83146 0.95633 1.86916 1.75554 1.22728 1.49443 1.22972 0.97379 0.99614 0.97186 1.22306 0.97655 0.98934 0.96150 1.22638 1.01146 0.95830 0.96230 1.20211 0.89736 0.88955 0.87534 1.22401 0.97606 0.99198 1.01271 1.43484 1.10409 1.16526 1.57579 1.18436 0.84762 1.07814 1.26125 0.95910 1.25990 0.97459 1.00753 0.94916 1.70058 1.30095 1.15917 1.37126 0.86024 0.84202 0.78197 0.76873 1.20034 1.21495 1.22264 1.20726 0.94380 0.85912 0.89420 1.22814 0.98413 0.95975 1.00000 1.22394 0.98506 0.96316 0.97978 1.22278 0.97623 0.99479 0.96159 1.22142 0.98971 0.96974 0.95739 0.91808 0.91292 0.93291 0.78850 0.90609 0.90777 0.92013 0.93597 0.94542 0.90062 0.91984 0.94080 0.95247 0.94509 0.93416 0.93776 0.95127 0.90913 0.92730 0.91044 0.94197 0.92469 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 7.54 71.98 0.54 -4.04 16 2 C 0.11 3.70 1.02 -10.03 -0.01 3.69 16 3 O -0.54 -18.05 8.27 -148.98 -1.23 -19.28 16 4 C -0.13 -4.04 6.10 31.71 0.19 -3.85 16 5 C -0.11 -4.14 6.91 31.88 0.22 -3.92 16 6 C -0.12 -5.28 5.06 31.67 0.16 -5.12 16 7 C 0.22 9.44 0.56 4.33 0.00 9.44 16 8 C -0.15 -6.23 7.19 71.98 0.52 -5.71 16 9 N -0.56 -26.06 1.74 -623.64 -1.09 -27.15 16 10 C -0.24 -12.49 6.39 84.03 0.54 -11.95 16 11 H 0.02 1.31 6.99 -2.91 -0.02 1.29 16 12 C 0.01 0.44 3.17 84.86 0.27 0.71 16 13 N -0.89 -48.57 10.46 21.65 0.23 -48.34 16 14 Si 0.92 43.69 29.52 68.60 2.02 45.71 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 16 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 17 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 18 C 0.20 8.61 1.80 45.71 0.08 8.69 16 19 C -0.13 -5.75 6.43 31.70 0.20 -5.55 16 20 C -0.11 -4.00 6.91 31.91 0.22 -3.78 16 21 C -0.12 -4.16 6.83 31.67 0.22 -3.94 16 22 C -0.10 -3.85 4.94 31.32 0.15 -3.69 16 23 H 0.06 1.77 6.70 -2.39 -0.02 1.75 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.05 1.51 6.70 -2.39 -0.02 1.49 16 26 H 0.36 8.82 9.07 -74.06 -0.67 8.15 16 27 H 0.08 2.03 7.84 -2.39 -0.02 2.01 16 28 H 0.07 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.04 1.54 7.84 -2.39 -0.02 1.53 16 32 H 0.08 4.13 4.01 -2.39 -0.01 4.12 16 33 H 0.06 3.11 6.06 -2.39 -0.01 3.09 16 34 H 0.04 1.55 6.68 -2.39 -0.02 1.53 16 35 H 0.03 1.21 6.30 -2.38 -0.02 1.20 16 36 H 0.25 13.23 8.32 -92.71 -0.77 12.46 16 37 H 0.05 2.01 6.41 -2.39 -0.02 2.00 16 38 H 0.04 2.29 7.19 -2.38 -0.02 2.27 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16 45 H 0.04 1.75 6.64 -2.39 -0.02 1.73 16 Total: -1.00 -57.65 320.00 3.53 -54.12 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.29 Total: 23.97 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.31 Total: -29.03 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -0.86 Total: -75.49 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.23 Total: -19.28 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.02 Total: 45.71 kcal Total: -57.65 3.53 -54.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.566 kcal (2) G-P(sol) polarization free energy of solvation -57.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds