Wall clock time and date at job start Mon Mar 30 2020 07:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 110.01787 * 2 1 4 4 C 1.54263 * 110.02875 * 121.38912 * 2 1 3 5 5 C 1.54892 * 104.19862 * 142.89619 * 4 2 1 6 6 C 1.54893 * 102.74238 * 322.05697 * 5 4 2 7 7 C 1.53874 * 110.03390 * 238.55409 * 2 1 3 8 8 C 1.53002 * 110.03308 * 121.43077 * 7 2 1 9 9 N 1.46503 * 110.03144 * 0.02562 * 7 2 1 10 10 C 1.36930 * 120.00131 * 115.16754 * 9 7 2 11 11 H 1.07999 * 119.99934 * 132.40553 * 10 9 7 12 12 C 1.38817 * 120.00373 * 312.41213 * 10 9 7 13 13 N 1.31621 * 119.99068 * 324.75302 * 12 10 9 14 14 Si 1.86791 * 120.00608 * 144.75426 * 12 10 9 15 15 H 1.48499 * 109.47322 * 89.99818 * 14 12 10 16 16 H 1.48502 * 109.47200 * 209.99961 * 14 12 10 17 17 H 1.48499 * 109.47129 * 330.00032 * 14 12 10 18 18 C 1.46499 * 120.00066 * 295.16495 * 9 7 2 19 19 C 1.54264 * 110.03737 * 241.48213 * 18 9 7 20 20 C 1.54962 * 104.16207 * 217.13674 * 19 18 9 21 21 C 1.54893 * 102.77669 * 37.88454 * 20 19 18 22 22 C 1.53874 * 110.03414 * 124.26013 * 18 9 7 23 23 H 1.08999 * 109.47176 * 304.41359 * 1 2 3 24 24 H 1.08992 * 109.47156 * 184.40908 * 1 2 3 25 25 H 1.09001 * 109.46401 * 64.41360 * 1 2 3 26 26 H 0.96697 * 114.00299 * 59.29289 * 3 2 1 27 27 H 1.09004 * 110.48562 * 261.57312 * 4 2 1 28 28 H 1.09000 * 110.49095 * 24.08054 * 4 2 1 29 29 H 1.08998 * 110.75717 * 80.36539 * 5 4 2 30 30 H 1.08991 * 110.75661 * 203.56045 * 5 4 2 31 31 H 1.09006 * 110.48186 * 156.62236 * 6 5 4 32 32 H 1.08995 * 110.48741 * 279.25736 * 6 5 4 33 33 H 1.09002 * 109.46794 * 72.09955 * 8 7 2 34 34 H 1.08995 * 109.46963 * 192.09403 * 8 7 2 35 35 H 1.08996 * 109.47157 * 312.10267 * 8 7 2 36 36 H 0.96998 * 119.99510 * 183.52297 * 13 12 10 37 37 H 1.09005 * 110.01422 * 2.87017 * 18 9 7 38 38 H 1.09012 * 110.48109 * 335.78216 * 19 18 9 39 39 H 1.08996 * 110.49096 * 98.42375 * 19 18 9 40 40 H 1.08997 * 110.71998 * 279.56779 * 20 19 18 41 41 H 1.09006 * 110.92180 * 156.28760 * 20 19 18 42 42 H 1.08995 * 110.48669 * 203.40486 * 21 20 19 43 43 H 1.08996 * 110.59787 * 80.81693 * 21 20 19 44 44 H 1.09003 * 110.03487 * 238.57629 * 22 18 9 45 45 H 1.09002 * 110.02826 * 359.95328 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0192 1.3427 0.0000 4 6 2.0584 -0.7549 1.2372 5 6 3.3137 -1.5004 0.7200 6 6 2.8874 -1.9410 -0.7025 7 6 2.0572 -0.7542 -1.2333 8 6 2.9410 0.1693 -2.0742 9 7 0.9360 -1.2456 -2.0381 10 6 0.7370 -0.7610 -3.3032 11 1 0.5563 -1.4433 -4.1207 12 6 0.7678 0.6073 -3.5352 13 7 0.3036 1.4392 -2.6270 14 14 1.4678 1.2679 -5.1361 15 1 0.3832 1.3723 -6.1449 16 1 2.0571 2.6107 -4.9019 17 1 2.5199 0.3457 -5.6341 18 6 0.0277 -2.2556 -1.4894 19 6 0.0778 -3.5349 -2.3500 20 6 -1.3858 -4.0438 -2.3584 21 6 -2.2045 -2.7311 -2.4355 22 6 -1.4229 -1.7449 -1.5432 23 1 -0.3633 0.5808 0.8478 24 1 -0.3633 -1.0245 0.0790 25 1 -0.3632 0.4438 -0.9269 26 1 1.7300 1.8667 0.7595 27 1 2.3296 -0.0526 2.0255 28 1 1.3133 -1.4635 1.5988 29 1 4.1710 -0.8288 0.6756 30 1 3.5343 -2.3653 1.3454 31 1 3.7638 -2.1044 -1.3298 32 1 2.2772 -2.8429 -0.6557 33 1 3.8861 0.3369 -1.5578 34 1 3.1330 -0.2938 -3.0420 35 1 2.4335 1.1226 -2.2217 36 1 0.2778 2.3915 -2.8097 37 1 0.3043 -2.4866 -0.4607 38 1 0.4059 -3.3007 -3.3628 39 1 0.7371 -4.2746 -1.8959 40 1 -1.6108 -4.5860 -1.4400 41 1 -1.5755 -4.6691 -3.2309 42 1 -3.2100 -2.8851 -2.0440 43 1 -2.2474 -2.3657 -3.4615 44 1 -1.8505 -1.7288 -0.5407 45 1 -1.4509 -0.7452 -1.9768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313141907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:02 Heat of formation + Delta-G solvation = -12.974760 kcal Electronic energy + Delta-G solvation = -23868.730261 eV Core-core repulsion = 20887.297048 eV Total energy + Delta-G solvation = -2981.433213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.51629 -36.96875 -34.44724 -33.44214 -30.94210 -29.97185 -28.64377 -27.50918 -26.48852 -24.91266 -23.79761 -21.99982 -20.15748 -19.91320 -18.96678 -18.28241 -15.92914 -15.38088 -15.12594 -14.94227 -14.65757 -14.38196 -13.76427 -13.08896 -12.92484 -12.67279 -12.51956 -12.19938 -11.76015 -11.61573 -11.42161 -11.26100 -10.98483 -10.63479 -10.53897 -10.44215 -10.35024 -10.28943 -10.25848 -10.11898 -9.96394 -9.86890 -9.75543 -9.54705 -9.48271 -9.27454 -9.06068 -8.66517 -7.89899 -6.40809 -5.70905 -3.29160 3.38287 3.48822 3.53754 4.50934 5.08870 5.24900 5.30265 5.40420 5.53918 5.57532 5.61033 5.70259 5.84171 6.15254 6.20820 6.23423 6.26625 6.30351 6.34116 6.37539 6.47353 6.50224 6.56542 6.61768 6.66896 6.68424 6.74362 6.76348 6.89403 6.97434 7.03967 7.07835 7.11109 7.14826 7.19401 7.29892 7.56674 7.58851 7.83378 7.98667 8.28795 8.72606 8.76140 9.31166 9.89594 10.59318 11.15236 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.013290 C = 0.008685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.252295 B = 2106.329521 C = 3223.199025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.129 3.871 3 O -0.540 6.540 4 C -0.155 4.155 5 C -0.120 4.120 6 C -0.136 4.136 7 C 0.230 3.770 8 C -0.123 4.123 9 N -0.561 5.561 10 C -0.289 4.289 11 H 0.053 0.947 12 C 0.057 3.943 13 N -0.839 5.839 14 Si 0.864 3.136 15 H -0.289 1.289 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.173 3.827 19 C -0.136 4.136 20 C -0.122 4.122 21 C -0.120 4.120 22 C -0.131 4.131 23 H 0.007 0.993 24 H 0.061 0.939 25 H 0.141 0.859 26 H 0.348 0.652 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.019 0.981 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.037 0.963 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 -5.063 5.571 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.087 3.913 3 O -0.343 6.343 4 C -0.193 4.193 5 C -0.158 4.158 6 C -0.176 4.176 7 C 0.141 3.859 8 C -0.181 4.181 9 N -0.280 5.280 10 C -0.418 4.418 11 H 0.071 0.929 12 C -0.148 4.148 13 N -0.476 5.476 14 Si 0.692 3.308 15 H -0.215 1.215 16 H -0.214 1.214 17 H -0.201 1.201 18 C 0.067 3.933 19 C -0.176 4.176 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.170 4.170 23 H 0.026 0.974 24 H 0.080 0.920 25 H 0.159 0.841 26 H 0.192 0.808 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.038 0.962 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.056 0.944 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.596 -5.049 5.033 7.153 hybrid contribution 0.103 0.584 -0.028 0.594 sum 0.699 -4.465 5.005 6.743 Atomic orbital electron populations 1.23405 0.95403 1.01667 1.04798 1.22337 0.93609 0.81552 0.93820 1.86698 1.75429 1.23755 1.48389 1.23179 0.97717 0.99685 0.98766 1.22375 0.97551 0.98808 0.97057 1.22999 0.99805 0.99831 0.94936 1.20008 0.86921 0.89770 0.89161 1.21826 0.96373 1.02145 0.97727 1.43961 1.25518 1.44848 1.13673 1.18394 1.50199 0.88712 0.84464 0.92923 1.25157 0.96796 0.97545 0.95338 1.69884 1.40096 1.03001 1.34639 0.87000 0.80125 0.78386 0.85291 1.21543 1.21446 1.20133 1.21059 0.89718 0.88815 0.93749 1.22867 0.94427 0.97845 1.02436 1.22431 0.96942 0.97025 0.99643 1.22293 0.97083 0.95692 1.00701 1.22817 0.95728 1.01500 0.96918 0.97425 0.92018 0.84072 0.80823 0.92839 0.92167 0.92107 0.93083 0.92438 0.91904 0.96153 0.93357 0.89066 0.93360 0.93550 0.90732 0.93906 0.93004 0.93187 0.93811 0.91995 0.94394 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.12 6.52 37.16 0.24 -3.88 16 2 C 0.13 2.62 1.15 -89.50 -0.10 2.52 16 3 O -0.54 -11.30 10.99 -35.23 -0.39 -11.68 16 4 C -0.16 -2.70 6.09 -25.07 -0.15 -2.85 16 5 C -0.12 -2.01 6.91 -24.73 -0.17 -2.18 16 6 C -0.14 -2.59 5.77 -25.07 -0.14 -2.74 16 7 C 0.23 4.97 0.72 -130.70 -0.09 4.87 16 8 C -0.12 -2.87 5.88 37.16 0.22 -2.66 16 9 N -0.56 -12.54 1.32 -148.47 -0.20 -12.74 16 10 C -0.29 -7.22 6.51 -15.06 -0.10 -7.32 16 11 H 0.05 1.38 6.99 -52.49 -0.37 1.02 16 12 C 0.06 1.43 2.80 -17.43 -0.05 1.39 16 13 N -0.84 -21.64 9.67 55.49 0.54 -21.11 16 14 Si 0.86 20.57 28.48 -169.99 -4.84 15.73 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.17 3.47 1.28 -66.81 -0.09 3.38 16 19 C -0.14 -2.52 6.38 -25.03 -0.16 -2.68 16 20 C -0.12 -1.99 6.91 -24.70 -0.17 -2.16 16 21 C -0.12 -2.11 6.83 -25.07 -0.17 -2.28 16 22 C -0.13 -2.58 4.30 -25.61 -0.11 -2.69 16 23 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 24 H 0.06 1.25 3.00 -51.93 -0.16 1.09 16 25 H 0.14 3.42 3.36 -51.93 -0.17 3.24 16 26 H 0.35 6.04 9.06 45.56 0.41 6.45 16 27 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 28 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 32 H 0.06 1.18 6.36 -51.93 -0.33 0.85 16 33 H 0.02 0.43 8.07 -51.93 -0.42 0.02 16 34 H 0.05 1.16 6.63 -51.93 -0.34 0.82 16 35 H 0.09 2.33 4.32 -51.93 -0.22 2.11 16 36 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 37 H 0.05 0.92 5.79 -51.93 -0.30 0.62 16 38 H 0.07 1.53 6.57 -51.92 -0.34 1.19 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.04 0.70 7.12 -51.93 -0.37 0.33 16 45 H 0.10 2.31 5.92 -51.93 -0.31 2.00 16 LS Contribution 310.17 15.07 4.67 4.67 Total: -1.00 -25.48 310.17 -7.93 -33.41 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -6.67 Total: 10.99 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -1.05 Total: -19.28 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.34 Total: -33.84 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.39 Total: -11.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.84 Total: 15.73 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.48 -7.93 -33.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.435 kcal (2) G-P(sol) polarization free energy of solvation -25.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds