Wall clock time and date at job start Mon Mar 30 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 110.01787 * 2 1 4 4 C 1.54263 * 110.02875 * 121.38912 * 2 1 3 5 5 C 1.54892 * 104.19862 * 142.89619 * 4 2 1 6 6 C 1.54893 * 102.74238 * 322.05697 * 5 4 2 7 7 C 1.53874 * 110.03390 * 238.55409 * 2 1 3 8 8 C 1.53002 * 110.03308 * 121.43077 * 7 2 1 9 9 N 1.46503 * 110.03144 * 0.02562 * 7 2 1 10 10 C 1.36930 * 120.00131 * 115.16754 * 9 7 2 11 11 H 1.07999 * 119.99934 * 132.40553 * 10 9 7 12 12 C 1.38817 * 120.00373 * 312.41213 * 10 9 7 13 13 N 1.31621 * 119.99068 * 324.75302 * 12 10 9 14 14 Si 1.86791 * 120.00608 * 144.75426 * 12 10 9 15 15 H 1.48499 * 109.47322 * 89.99818 * 14 12 10 16 16 H 1.48502 * 109.47200 * 209.99961 * 14 12 10 17 17 H 1.48499 * 109.47129 * 330.00032 * 14 12 10 18 18 C 1.46499 * 120.00066 * 295.16495 * 9 7 2 19 19 C 1.54264 * 110.03737 * 241.48213 * 18 9 7 20 20 C 1.54962 * 104.16207 * 217.13674 * 19 18 9 21 21 C 1.54893 * 102.77669 * 37.88454 * 20 19 18 22 22 C 1.53874 * 110.03414 * 124.26013 * 18 9 7 23 23 H 1.08999 * 109.47176 * 304.41359 * 1 2 3 24 24 H 1.08992 * 109.47156 * 184.40908 * 1 2 3 25 25 H 1.09001 * 109.46401 * 64.41360 * 1 2 3 26 26 H 0.96697 * 114.00299 * 59.29289 * 3 2 1 27 27 H 1.09004 * 110.48562 * 261.57312 * 4 2 1 28 28 H 1.09000 * 110.49095 * 24.08054 * 4 2 1 29 29 H 1.08998 * 110.75717 * 80.36539 * 5 4 2 30 30 H 1.08991 * 110.75661 * 203.56045 * 5 4 2 31 31 H 1.09006 * 110.48186 * 156.62236 * 6 5 4 32 32 H 1.08995 * 110.48741 * 279.25736 * 6 5 4 33 33 H 1.09002 * 109.46794 * 72.09955 * 8 7 2 34 34 H 1.08995 * 109.46963 * 192.09403 * 8 7 2 35 35 H 1.08996 * 109.47157 * 312.10267 * 8 7 2 36 36 H 0.96998 * 119.99510 * 183.52297 * 13 12 10 37 37 H 1.09005 * 110.01422 * 2.87017 * 18 9 7 38 38 H 1.09012 * 110.48109 * 335.78216 * 19 18 9 39 39 H 1.08996 * 110.49096 * 98.42375 * 19 18 9 40 40 H 1.08997 * 110.71998 * 279.56779 * 20 19 18 41 41 H 1.09006 * 110.92180 * 156.28760 * 20 19 18 42 42 H 1.08995 * 110.48669 * 203.40486 * 21 20 19 43 43 H 1.08996 * 110.59787 * 80.81693 * 21 20 19 44 44 H 1.09003 * 110.03487 * 238.57629 * 22 18 9 45 45 H 1.09002 * 110.02826 * 359.95328 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0192 1.3427 0.0000 4 6 2.0584 -0.7549 1.2372 5 6 3.3137 -1.5004 0.7200 6 6 2.8874 -1.9410 -0.7025 7 6 2.0572 -0.7542 -1.2333 8 6 2.9410 0.1693 -2.0742 9 7 0.9360 -1.2456 -2.0381 10 6 0.7370 -0.7610 -3.3032 11 1 0.5563 -1.4433 -4.1207 12 6 0.7678 0.6073 -3.5352 13 7 0.3036 1.4392 -2.6270 14 14 1.4678 1.2679 -5.1361 15 1 0.3832 1.3723 -6.1449 16 1 2.0571 2.6107 -4.9019 17 1 2.5199 0.3457 -5.6341 18 6 0.0277 -2.2556 -1.4894 19 6 0.0778 -3.5349 -2.3500 20 6 -1.3858 -4.0438 -2.3584 21 6 -2.2045 -2.7311 -2.4355 22 6 -1.4229 -1.7449 -1.5432 23 1 -0.3633 0.5808 0.8478 24 1 -0.3633 -1.0245 0.0790 25 1 -0.3632 0.4438 -0.9269 26 1 1.7300 1.8667 0.7595 27 1 2.3296 -0.0526 2.0255 28 1 1.3133 -1.4635 1.5988 29 1 4.1710 -0.8288 0.6756 30 1 3.5343 -2.3653 1.3454 31 1 3.7638 -2.1044 -1.3298 32 1 2.2772 -2.8429 -0.6557 33 1 3.8861 0.3369 -1.5578 34 1 3.1330 -0.2938 -3.0420 35 1 2.4335 1.1226 -2.2217 36 1 0.2778 2.3915 -2.8097 37 1 0.3043 -2.4866 -0.4607 38 1 0.4059 -3.3007 -3.3628 39 1 0.7371 -4.2746 -1.8959 40 1 -1.6108 -4.5860 -1.4400 41 1 -1.5755 -4.6691 -3.2309 42 1 -3.2100 -2.8851 -2.0440 43 1 -2.2474 -2.3657 -3.4615 44 1 -1.8505 -1.7288 -0.5407 45 1 -1.4509 -0.7452 -1.9768 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313141907.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:01 Heat of formation + Delta-G solvation = -26.673986 kcal Electronic energy + Delta-G solvation = -23869.324304 eV Core-core repulsion = 20887.297048 eV Total energy + Delta-G solvation = -2982.027256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11574 -38.48021 -36.09912 -35.09456 -32.69300 -31.60356 -30.26819 -29.00570 -28.15607 -26.53031 -25.52680 -23.64234 -21.61948 -21.36957 -20.58420 -19.96279 -17.67605 -17.00490 -16.69974 -16.47972 -16.45439 -15.98262 -15.37796 -14.69753 -14.53614 -14.25028 -14.11190 -13.73496 -13.46121 -13.26140 -13.09761 -12.95978 -12.70361 -12.45603 -12.21176 -12.16176 -12.04112 -11.77299 -11.73532 -11.63563 -11.53006 -11.44165 -11.35278 -11.21626 -11.05838 -10.87530 -10.72477 -10.22284 -9.83659 -8.25893 -7.59547 -5.22691 1.41618 1.50279 1.55937 2.56443 3.25559 3.59543 3.74324 3.96183 4.09989 4.14526 4.15653 4.30464 4.40839 4.61795 4.69445 4.75849 4.78284 4.85442 4.88957 5.00597 5.04903 5.05759 5.07363 5.09104 5.14903 5.19469 5.27215 5.28689 5.31379 5.36903 5.40249 5.45851 5.49461 5.59797 5.68764 5.74570 5.85371 5.88907 5.92804 6.09452 6.48850 6.78595 7.30613 7.43862 8.08531 8.70699 9.17646 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.013290 C = 0.008685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.252295 B = 2106.329521 C = 3223.199025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.127 3.873 3 O -0.560 6.560 4 C -0.148 4.148 5 C -0.111 4.111 6 C -0.133 4.133 7 C 0.217 3.783 8 C -0.115 4.115 9 N -0.567 5.567 10 C -0.283 4.283 11 H 0.034 0.966 12 C 0.032 3.968 13 N -0.847 5.847 14 Si 0.896 3.104 15 H -0.291 1.291 16 H -0.296 1.296 17 H -0.281 1.281 18 C 0.172 3.828 19 C -0.134 4.134 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.125 4.125 23 H 0.014 0.986 24 H 0.068 0.932 25 H 0.111 0.889 26 H 0.362 0.638 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.027 0.973 34 H 0.028 0.972 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -6.889 7.495 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.084 3.916 3 O -0.364 6.364 4 C -0.186 4.186 5 C -0.149 4.149 6 C -0.173 4.173 7 C 0.129 3.871 8 C -0.173 4.173 9 N -0.287 5.287 10 C -0.413 4.413 11 H 0.051 0.949 12 C -0.171 4.171 13 N -0.486 5.486 14 Si 0.725 3.275 15 H -0.218 1.218 16 H -0.222 1.222 17 H -0.206 1.206 18 C 0.066 3.934 19 C -0.173 4.173 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.164 4.164 23 H 0.033 0.967 24 H 0.086 0.914 25 H 0.129 0.871 26 H 0.208 0.792 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.638 -6.883 6.963 9.812 hybrid contribution 0.087 1.163 -0.646 1.333 sum 0.725 -5.720 6.318 8.553 Atomic orbital electron populations 1.23266 0.96231 1.01790 1.03451 1.22306 0.92988 0.81573 0.94701 1.86659 1.75628 1.24494 1.49663 1.23085 0.98015 0.99847 0.97610 1.22347 0.97111 0.99773 0.95702 1.22912 0.99236 0.98721 0.96390 1.20209 0.86783 0.90709 0.89398 1.21696 0.96930 1.01320 0.97319 1.43999 1.26459 1.45202 1.13088 1.18277 1.49244 0.88343 0.85393 0.94855 1.25391 0.97531 0.97846 0.96361 1.70004 1.41082 1.02350 1.35123 0.86499 0.79437 0.77473 0.84073 1.21787 1.22231 1.20615 1.21164 0.89284 0.88676 0.94300 1.22787 0.96483 0.97533 1.00520 1.22387 0.94584 0.96413 1.01528 1.22259 0.98357 0.95861 0.99122 1.22670 0.96287 0.99807 0.97641 0.96705 0.91400 0.87129 0.79217 0.91114 0.91191 0.92220 0.90145 0.92780 0.91465 0.95371 0.95258 0.91422 0.94242 0.92703 0.93520 0.92318 0.90585 0.91809 0.91518 0.94047 0.93210 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.82 6.52 71.98 0.47 -7.35 16 2 C 0.13 4.94 1.15 -10.07 -0.01 4.93 16 3 O -0.56 -22.94 10.99 -148.98 -1.64 -24.57 16 4 C -0.15 -4.61 6.09 31.67 0.19 -4.42 16 5 C -0.11 -3.34 6.91 31.89 0.22 -3.12 16 6 C -0.13 -4.77 5.77 31.67 0.18 -4.59 16 7 C 0.22 9.20 0.72 4.33 0.00 9.20 16 8 C -0.12 -5.40 5.88 71.98 0.42 -4.98 16 9 N -0.57 -25.35 1.32 -623.64 -0.83 -26.17 16 10 C -0.28 -14.47 6.51 84.04 0.55 -13.92 16 11 H 0.03 1.83 6.99 -2.91 -0.02 1.81 16 12 C 0.03 1.67 2.80 84.86 0.24 1.91 16 13 N -0.85 -44.96 9.67 21.65 0.21 -44.75 16 14 Si 0.90 43.43 28.48 68.60 1.95 45.39 16 15 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 16 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 17 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 18 C 0.17 6.65 1.28 45.72 0.06 6.70 16 19 C -0.13 -4.72 6.38 31.69 0.20 -4.51 16 20 C -0.11 -3.30 6.91 31.91 0.22 -3.08 16 21 C -0.12 -3.97 6.83 31.67 0.22 -3.75 16 22 C -0.13 -4.83 4.30 31.32 0.13 -4.70 16 23 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.07 2.64 3.00 -2.39 -0.01 2.63 16 25 H 0.11 5.39 3.36 -2.39 -0.01 5.38 16 26 H 0.36 12.14 9.06 -74.06 -0.67 11.47 16 27 H 0.07 1.98 8.05 -2.39 -0.02 1.96 16 28 H 0.07 2.06 7.79 -2.39 -0.02 2.05 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 1.94 7.84 -2.38 -0.02 1.92 16 32 H 0.07 2.33 6.36 -2.39 -0.02 2.32 16 33 H 0.03 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.03 1.42 6.63 -2.39 -0.02 1.41 16 35 H 0.07 3.51 4.32 -2.39 -0.01 3.50 16 36 H 0.25 13.20 8.32 -92.71 -0.77 12.43 16 37 H 0.05 2.03 5.79 -2.38 -0.01 2.02 16 38 H 0.05 1.90 6.57 -2.38 -0.02 1.89 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.77 7.12 -2.39 -0.02 1.75 16 45 H 0.06 2.74 5.92 -2.39 -0.01 2.72 16 Total: -1.00 -55.45 310.17 3.11 -52.34 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: 0.31 Total: 29.44 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 3.10 Total: -31.67 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.62 Total: -70.92 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -1.64 Total: -24.57 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.95 Total: 45.39 kcal Total: -55.45 3.11 -52.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313141907.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.666 kcal (2) G-P(sol) polarization free energy of solvation -55.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds