Wall clock time and date at job start Mon Mar 30 2020 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46948 * 2 1 4 4 C 1.53006 * 109.46645 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47352 * 59.99989 * 4 3 2 6 6 C 1.50702 * 109.47159 * 59.99543 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 C 1.52997 * 109.47555 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47337 * 300.00682 * 10 9 8 12 12 C 1.53001 * 109.46903 * 60.00409 * 10 9 8 13 13 C 1.50694 * 109.47460 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86789 * 120.00458 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47491 * 119.99896 * 17 15 13 20 20 H 1.48511 * 109.47242 * 239.99873 * 17 15 13 21 21 C 1.52996 * 109.47068 * 299.99897 * 5 4 3 22 22 C 1.52996 * 109.47166 * 239.99917 * 2 1 3 23 23 H 1.08999 * 109.47407 * 59.99681 * 1 2 3 24 24 H 1.08998 * 109.47559 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47192 * 300.00130 * 1 2 3 26 26 H 1.09003 * 109.47049 * 119.99662 * 2 1 3 27 27 H 1.09001 * 109.47738 * 60.00199 * 3 2 1 28 28 H 1.09003 * 109.46969 * 299.99711 * 3 2 1 29 29 H 1.08994 * 109.47293 * 299.99785 * 4 3 2 30 30 H 1.09004 * 109.46828 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47405 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 33 33 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 34 34 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 35 35 H 1.08993 * 109.47298 * 59.99049 * 11 10 9 36 36 H 1.09001 * 109.47411 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46412 * 299.99812 * 11 10 9 38 38 H 1.08992 * 109.47503 * 59.99902 * 12 10 9 39 39 H 1.09000 * 109.47703 * 180.02562 * 12 10 9 40 40 H 1.09007 * 109.46685 * 300.00061 * 12 10 9 41 41 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47551 * 179.97438 * 21 5 4 43 43 H 1.09003 * 109.46851 * 300.00074 * 21 5 4 44 44 H 1.09004 * 109.47066 * 300.00004 * 22 2 1 45 45 H 1.09003 * 109.47345 * 59.99926 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 3.5766 1.4319 -2.4803 7 8 2.8797 2.4183 -2.3687 8 7 3.9063 0.9749 -3.7046 9 6 3.4225 1.6691 -4.9005 10 6 3.9360 0.9509 -6.1501 11 6 5.4660 0.9496 -6.1450 12 6 3.4248 -0.4912 -6.1557 13 6 3.4388 1.6654 -7.3802 14 1 2.8181 2.5436 -7.2808 15 6 3.7752 1.1973 -8.6327 16 7 4.5306 0.1275 -8.7537 17 14 3.1595 2.0833 -10.1574 18 1 2.3348 3.2501 -9.7528 19 1 4.3181 2.5502 -10.9605 20 1 2.3355 1.1537 -10.9713 21 6 3.5695 -0.7211 -1.2501 22 6 2.0400 -0.7212 -1.2492 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9285 0.8891 30 1 3.9334 2.4701 -0.0011 31 1 5.1694 0.7217 -1.2509 32 1 4.4639 0.1862 -3.7940 33 1 2.3325 1.6696 -4.9043 34 1 3.7862 2.6966 -4.8963 35 1 5.8259 0.4331 -5.2553 36 1 5.8318 0.4375 -7.0350 37 1 5.8301 1.9770 -6.1410 38 1 2.3349 -0.4904 -6.1593 39 1 3.7909 -1.0031 -7.0456 40 1 3.7848 -1.0077 -5.2659 41 1 4.7676 -0.2016 -9.6349 42 1 3.9320 -1.2347 -2.1406 43 1 3.9332 -1.2350 -0.3603 44 1 1.6767 -1.7489 -1.2492 45 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316242969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:12 Heat of formation + Delta-G solvation = -77.199028 kcal Electronic energy + Delta-G solvation = -21801.399535 eV Core-core repulsion = 18817.181349 eV Total energy + Delta-G solvation = -2984.218186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23965 -37.55882 -36.15131 -33.40241 -32.62257 -30.95897 -30.37676 -26.91720 -25.72284 -25.52605 -24.78706 -22.62028 -22.09160 -20.37754 -19.18508 -18.68337 -16.46038 -15.91369 -15.70113 -15.07023 -14.64029 -14.32826 -14.18863 -14.10177 -13.52457 -13.26625 -12.88221 -12.75820 -12.32009 -12.16952 -12.07439 -11.84902 -11.53288 -11.47780 -11.37341 -11.19001 -10.95666 -10.85512 -10.66429 -10.49428 -10.34845 -10.19101 -10.06613 -9.95320 -9.62497 -9.39405 -9.02264 -8.75930 -8.42642 -8.24895 -6.01987 -4.11800 3.14344 3.27066 3.35724 3.40347 3.82797 4.40591 4.67697 4.78893 4.79316 5.06579 5.15377 5.24890 5.38580 5.43440 5.48311 5.56636 5.60316 5.72741 5.83413 5.88009 5.96566 6.04814 6.07849 6.23684 6.27310 6.31846 6.35273 6.38955 6.39716 6.52329 6.69054 6.82852 6.83178 6.95251 7.02636 7.11398 7.37010 7.56178 7.69901 8.01364 8.10281 8.19673 8.39513 8.79853 8.89810 9.54053 10.99412 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.004443 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.847123 B = 6300.717789 C = 6398.434130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.129 4.129 4 C -0.094 4.094 5 C -0.111 4.111 6 C 0.511 3.489 7 O -0.549 6.549 8 N -0.717 5.717 9 C 0.133 3.867 10 C 0.055 3.945 11 C -0.130 4.130 12 C -0.129 4.129 13 C -0.504 4.504 14 H 0.057 0.943 15 C 0.066 3.934 16 N -0.886 5.886 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.109 4.109 22 C -0.118 4.118 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.396 0.604 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.006 0.994 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.006 0.994 41 H 0.259 0.741 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -3.479 15.552 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.166 4.166 4 C -0.132 4.132 5 C -0.133 4.133 6 C 0.297 3.703 7 O -0.428 6.428 8 N -0.367 5.367 9 C 0.010 3.990 10 C 0.055 3.945 11 C -0.188 4.188 12 C -0.187 4.187 13 C -0.543 4.543 14 H 0.075 0.925 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.147 4.147 22 C -0.155 4.155 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.231 0.769 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.599 -2.877 15.451 15.797 hybrid contribution 0.039 0.028 -0.964 0.965 sum -1.560 -2.850 14.487 14.847 Atomic orbital electron populations 1.21815 0.95580 1.01232 1.01755 1.21122 0.95278 0.96666 0.97753 1.21857 0.95104 0.96004 1.03620 1.21266 0.96548 1.00177 0.95195 1.21378 1.01235 0.96277 0.94382 1.20469 0.80518 0.84543 0.84766 1.90578 1.38599 1.26936 1.86724 1.46342 1.52621 1.31692 1.06087 1.21668 0.98038 0.95657 0.83630 1.18356 0.92746 0.92777 0.90665 1.21821 0.97829 0.99100 1.00022 1.21815 0.98532 0.98337 1.00034 1.21029 1.31380 1.11966 0.89917 0.92454 1.24879 0.94883 0.94931 0.98846 1.69817 1.36747 1.22842 1.23061 0.86529 0.78622 0.79788 0.83023 1.19775 1.21065 1.21071 1.21500 0.96360 0.94372 1.02437 1.21615 0.94995 1.00305 0.98614 0.92559 0.93056 0.93001 0.91882 0.92815 0.88651 0.92073 0.91577 0.89096 0.76858 0.92933 0.92918 0.97538 0.89643 0.95501 0.95508 0.89663 0.97521 0.93098 0.91403 0.91199 0.91991 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.02 2.72 -90.62 -0.25 -1.26 16 3 C -0.13 -1.65 4.91 -26.73 -0.13 -1.78 16 4 C -0.09 -1.14 5.09 -26.73 -0.14 -1.27 16 5 C -0.11 -1.41 3.01 -91.77 -0.28 -1.69 16 6 C 0.51 8.62 5.64 -10.98 -0.06 8.56 16 7 O -0.55 -11.05 13.66 5.55 0.08 -10.97 16 8 N -0.72 -12.62 4.85 -60.29 -0.29 -12.92 16 9 C 0.13 2.82 4.50 -4.04 -0.02 2.80 16 10 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 11 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 12 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 13 C -0.50 -13.22 8.01 -34.44 -0.28 -13.50 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 16 N -0.89 -23.57 9.35 55.43 0.52 -23.06 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.11 -1.21 5.36 -26.76 -0.14 -1.36 16 22 C -0.12 -1.42 4.98 -26.76 -0.13 -1.56 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.10 1.53 5.51 -51.93 -0.29 1.25 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.40 6.38 5.59 -40.82 -0.23 6.15 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 36 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 40 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 41 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 42 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.98 7.21 -51.93 -0.37 0.61 16 LS Contribution 335.69 15.07 5.06 5.06 Total: -1.00 -27.51 335.69 -8.39 -35.90 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.08 Total: 4.93 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.65 Total: -14.67 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.23 Total: -35.97 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.51 -8.39 -35.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316242969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.298 kcal (2) G-P(sol) polarization free energy of solvation -27.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds