Wall clock time and date at job start Mon Mar 30 2020 07:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46948 * 2 1 4 4 C 1.53006 * 109.46645 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47352 * 59.99989 * 4 3 2 6 6 C 1.50702 * 109.47159 * 59.99543 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 C 1.52997 * 109.47555 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47337 * 300.00682 * 10 9 8 12 12 C 1.53001 * 109.46903 * 60.00409 * 10 9 8 13 13 C 1.50694 * 109.47460 * 180.02562 * 10 9 8 14 14 H 1.08002 * 120.00179 * 359.97438 * 13 10 9 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 10 17 17 Si 1.86789 * 120.00458 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47491 * 119.99896 * 17 15 13 20 20 H 1.48511 * 109.47242 * 239.99873 * 17 15 13 21 21 C 1.52996 * 109.47068 * 299.99897 * 5 4 3 22 22 C 1.52996 * 109.47166 * 239.99917 * 2 1 3 23 23 H 1.08999 * 109.47407 * 59.99681 * 1 2 3 24 24 H 1.08998 * 109.47559 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47192 * 300.00130 * 1 2 3 26 26 H 1.09003 * 109.47049 * 119.99662 * 2 1 3 27 27 H 1.09001 * 109.47738 * 60.00199 * 3 2 1 28 28 H 1.09003 * 109.46969 * 299.99711 * 3 2 1 29 29 H 1.08994 * 109.47293 * 299.99785 * 4 3 2 30 30 H 1.09004 * 109.46828 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47405 * 179.97438 * 5 4 3 32 32 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 33 33 H 1.08998 * 109.47134 * 300.00670 * 9 8 6 34 34 H 1.09002 * 109.46857 * 59.99862 * 9 8 6 35 35 H 1.08993 * 109.47298 * 59.99049 * 11 10 9 36 36 H 1.09001 * 109.47411 * 179.97438 * 11 10 9 37 37 H 1.09002 * 109.46412 * 299.99812 * 11 10 9 38 38 H 1.08992 * 109.47503 * 59.99902 * 12 10 9 39 39 H 1.09000 * 109.47703 * 180.02562 * 12 10 9 40 40 H 1.09007 * 109.46685 * 300.00061 * 12 10 9 41 41 H 0.97005 * 119.99656 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.47551 * 179.97438 * 21 5 4 43 43 H 1.09003 * 109.46851 * 300.00074 * 21 5 4 44 44 H 1.09004 * 109.47066 * 300.00004 * 22 2 1 45 45 H 1.09003 * 109.47345 * 59.99926 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 3.5766 1.4319 -2.4803 7 8 2.8797 2.4183 -2.3687 8 7 3.9063 0.9749 -3.7046 9 6 3.4225 1.6691 -4.9005 10 6 3.9360 0.9509 -6.1501 11 6 5.4660 0.9496 -6.1450 12 6 3.4248 -0.4912 -6.1557 13 6 3.4388 1.6654 -7.3802 14 1 2.8181 2.5436 -7.2808 15 6 3.7752 1.1973 -8.6327 16 7 4.5306 0.1275 -8.7537 17 14 3.1595 2.0833 -10.1574 18 1 2.3348 3.2501 -9.7528 19 1 4.3181 2.5502 -10.9605 20 1 2.3355 1.1537 -10.9713 21 6 3.5695 -0.7211 -1.2501 22 6 2.0400 -0.7212 -1.2492 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9285 0.8891 30 1 3.9334 2.4701 -0.0011 31 1 5.1694 0.7217 -1.2509 32 1 4.4639 0.1862 -3.7940 33 1 2.3325 1.6696 -4.9043 34 1 3.7862 2.6966 -4.8963 35 1 5.8259 0.4331 -5.2553 36 1 5.8318 0.4375 -7.0350 37 1 5.8301 1.9770 -6.1410 38 1 2.3349 -0.4904 -6.1593 39 1 3.7909 -1.0031 -7.0456 40 1 3.7848 -1.0077 -5.2659 41 1 4.7676 -0.2016 -9.6349 42 1 3.9320 -1.2347 -2.1406 43 1 3.9332 -1.2350 -0.3603 44 1 1.6767 -1.7489 -1.2492 45 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316242969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:11 Heat of formation + Delta-G solvation = -91.548867 kcal Electronic energy + Delta-G solvation = -21802.021791 eV Core-core repulsion = 18817.181349 eV Total energy + Delta-G solvation = -2984.840442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.47201 -38.89475 -37.74921 -35.03883 -33.73732 -32.60369 -31.46527 -28.07753 -27.56853 -27.35942 -26.42307 -23.56661 -23.27911 -21.42236 -20.62278 -20.33976 -18.02131 -17.43823 -17.03420 -16.61852 -16.34406 -15.62309 -15.25957 -15.14444 -14.84908 -14.74120 -14.42344 -14.11940 -13.94599 -13.39049 -13.20045 -13.12581 -13.01889 -12.81932 -12.66834 -12.58199 -12.47767 -12.35513 -12.26156 -12.14549 -11.86970 -11.52170 -11.45818 -11.20904 -10.97720 -10.86792 -10.72241 -10.40957 -10.36336 -9.83267 -8.03225 -6.18792 1.39958 1.44150 1.53518 1.81351 2.37764 2.53810 3.20224 3.72034 3.79805 3.87110 4.04597 4.24464 4.35676 4.48903 4.49182 4.52288 4.56944 4.68164 4.69937 4.72971 4.81490 4.95289 4.98726 5.00352 5.05366 5.09408 5.13812 5.17109 5.17786 5.19582 5.32243 5.38056 5.41050 5.44784 5.47686 5.61671 5.66421 5.66793 5.79076 6.14715 6.21505 6.43277 6.76989 6.85429 7.44738 7.48924 8.95766 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031144 B = 0.004443 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.847123 B = 6300.717789 C = 6398.434130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.093 4.093 5 C -0.104 4.104 6 C 0.507 3.493 7 O -0.586 6.586 8 N -0.712 5.712 9 C 0.151 3.849 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.118 4.118 13 C -0.528 4.528 14 H 0.041 0.959 15 C 0.029 3.971 16 N -0.898 5.898 17 Si 0.944 3.056 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.281 1.281 21 C -0.105 4.105 22 C -0.120 4.120 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.406 0.594 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.260 0.740 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -5.028 17.522 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.167 4.167 4 C -0.131 4.131 5 C -0.126 4.126 6 C 0.295 3.705 7 O -0.467 6.467 8 N -0.364 5.364 9 C 0.027 3.973 10 C 0.050 3.950 11 C -0.177 4.177 12 C -0.176 4.176 13 C -0.567 4.567 14 H 0.059 0.941 15 C -0.171 4.171 16 N -0.537 5.537 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.143 4.143 22 C -0.157 4.157 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.134 0.866 32 H 0.243 0.757 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.659 -4.445 17.431 18.000 hybrid contribution -0.296 0.543 -1.551 1.670 sum -0.955 -3.902 15.880 16.380 Atomic orbital electron populations 1.21819 0.95619 1.01852 1.01101 1.21125 0.95331 0.95608 0.98353 1.21804 0.95998 0.96881 1.02031 1.21309 0.95752 0.99843 0.96190 1.21464 1.02575 0.96746 0.91768 1.21384 0.79451 0.84084 0.85561 1.90580 1.40070 1.28807 1.87248 1.46180 1.52923 1.31881 1.05403 1.21168 0.96584 0.94853 0.84721 1.18355 0.93277 0.93049 0.90301 1.21653 0.97062 0.98567 1.00403 1.21642 0.97729 0.97803 1.00394 1.21293 1.31688 1.12007 0.91710 0.94079 1.25435 0.95134 0.95609 1.00896 1.69912 1.36956 1.23296 1.23521 0.85723 0.78152 0.78725 0.80299 1.20203 1.20599 1.20640 1.21549 0.95294 0.93222 1.04233 1.21631 0.96067 1.00661 0.97356 0.94933 0.91772 0.91982 0.89264 0.91927 0.92740 0.88607 0.93024 0.86556 0.75654 0.95065 0.94860 0.94367 0.91891 0.96452 0.96579 0.91905 0.94378 0.93015 0.91130 0.87826 0.90549 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.19 71.98 0.66 -2.31 16 2 C -0.09 -1.74 2.72 -10.79 -0.03 -1.77 16 3 C -0.13 -3.17 4.91 30.60 0.15 -3.02 16 4 C -0.09 -2.01 5.09 30.59 0.16 -1.85 16 5 C -0.10 -2.35 3.01 -11.54 -0.03 -2.39 16 6 C 0.51 16.86 5.64 87.66 0.49 17.35 16 7 O -0.59 -24.26 13.66 -3.04 -0.04 -24.31 16 8 N -0.71 -24.66 4.85 -463.06 -2.25 -26.90 16 9 C 0.15 6.57 4.50 86.38 0.39 6.96 16 10 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 11 C -0.12 -5.31 8.08 71.98 0.58 -4.72 16 12 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 13 C -0.53 -28.35 8.01 25.60 0.21 -28.15 16 14 H 0.04 2.28 7.74 -2.91 -0.02 2.25 16 15 C 0.03 1.54 5.15 84.66 0.44 1.98 16 16 N -0.90 -47.97 9.35 21.45 0.20 -47.77 16 17 Si 0.94 42.97 29.54 68.60 2.03 45.00 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C -0.11 -1.95 5.36 30.58 0.16 -1.79 16 22 C -0.12 -2.64 4.98 30.58 0.15 -2.49 16 23 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.81 5.51 -2.39 -0.01 1.79 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.26 8.10 -2.38 -0.02 1.24 16 31 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.41 12.24 5.59 -92.71 -0.52 11.72 16 33 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 36 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 40 H 0.04 1.41 6.86 -2.38 -0.02 1.39 16 41 H 0.26 13.34 8.31 -92.70 -0.77 12.57 16 42 H 0.07 1.29 7.57 -2.39 -0.02 1.28 16 43 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.03 0.84 7.21 -2.39 -0.02 0.82 16 Total: -1.00 -61.35 335.69 4.24 -57.10 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.43 Total: 21.41 kcal Atomic # 6 Polarization: -28.42 SS G_CDS: 3.88 Total: -24.54 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -2.05 Total: -74.68 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.04 Total: -24.31 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -61.35 4.24 -57.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316242969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.444 kcal (2) G-P(sol) polarization free energy of solvation -61.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds