Wall clock time and date at job start Mon Mar 30 2020 06:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47246 * 239.99977 * 3 2 1 5 5 H 1.48505 * 109.46688 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47416 * 119.99195 * 3 2 1 7 7 C 1.37880 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00218 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47402 * 179.97438 * 9 7 2 11 11 C 1.53119 * 109.52475 * 185.00034 * 10 9 7 12 12 C 1.53031 * 109.30890 * 182.42107 * 11 10 9 13 13 N 1.46927 * 109.48238 * 59.15613 * 12 11 10 14 14 C 1.46900 * 110.98551 * 174.18118 * 13 12 11 15 15 H 1.09000 * 109.47366 * 304.74321 * 14 13 12 16 16 C 1.52998 * 109.47496 * 64.74467 * 14 13 12 17 17 C 1.53001 * 109.47195 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47504 * 300.00149 * 17 16 14 19 19 C 1.52998 * 109.47016 * 59.99741 * 18 17 16 20 20 C 1.52999 * 109.47644 * 300.00165 * 19 18 17 21 21 H 1.09000 * 109.47255 * 300.00169 * 20 19 18 22 22 O 1.42899 * 109.47622 * 179.97438 * 20 19 18 23 23 C 1.46848 * 111.22142 * 298.28109 * 13 12 11 24 24 C 1.53038 * 109.52002 * 61.74093 * 23 13 12 25 25 H 0.96995 * 119.99999 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47105 * 59.99472 * 9 7 2 27 27 H 1.09004 * 109.46887 * 299.99728 * 9 7 2 28 28 H 1.09000 * 109.51942 * 305.12541 * 10 9 7 29 29 H 1.09001 * 109.49970 * 302.37912 * 11 10 9 30 30 H 1.08997 * 109.50066 * 62.45654 * 11 10 9 31 31 H 1.08998 * 109.46197 * 179.21666 * 12 11 10 32 32 H 1.09005 * 109.45928 * 299.17689 * 12 11 10 33 33 H 1.08999 * 109.47043 * 300.00282 * 16 14 13 34 34 H 1.09004 * 109.46813 * 60.00075 * 16 14 13 35 35 H 1.09001 * 109.47041 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.46911 * 60.00462 * 17 16 14 37 37 H 1.09004 * 109.47292 * 300.00080 * 18 17 16 38 38 H 1.08997 * 109.46958 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.47544 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.46813 * 60.00045 * 19 18 17 41 41 H 0.96700 * 113.99377 * 60.00017 * 22 20 19 42 42 H 1.08996 * 109.46115 * 301.72748 * 23 13 12 43 43 H 1.08996 * 109.46478 * 181.75841 * 23 13 12 44 44 H 1.09000 * 109.49988 * 180.87737 * 24 23 13 45 45 H 1.09000 * 109.53285 * 60.78390 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4850 -4.9853 -0.1253 12 6 2.4786 -6.1476 -0.0640 13 7 3.2097 -6.1007 1.2096 14 6 4.0738 -7.2786 1.3639 15 1 3.4758 -8.1840 1.2598 16 6 5.1605 -7.2587 0.2871 17 6 6.0608 -8.4853 0.4483 18 6 6.7133 -8.4608 1.8319 19 6 5.6265 -8.4807 2.9087 20 6 4.7263 -7.2542 2.7477 21 1 5.3240 -6.3486 2.8515 22 8 3.7109 -7.2731 3.7530 23 6 3.9852 -4.8597 1.3319 24 6 3.0360 -3.6594 1.3117 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.9312 -3.5549 -0.8397 29 1 0.7707 -5.0737 0.6933 30 1 0.9535 -5.0106 -1.0765 31 1 1.9386 -7.0914 -0.1394 32 1 3.1842 -6.0661 -0.8909 33 1 4.6957 -7.2757 -0.6986 34 1 5.7586 -6.3533 0.3913 35 1 6.8353 -8.4708 -0.3185 36 1 5.4630 -9.3908 0.3444 37 1 7.3111 -7.5552 1.9358 38 1 7.3550 -9.3344 1.9465 39 1 6.0913 -8.4638 3.8945 40 1 5.0288 -9.3863 2.8048 41 1 4.0527 -7.2594 4.6574 42 1 4.6837 -4.7843 0.4986 43 1 4.5394 -4.8687 2.2704 44 1 3.6131 -2.7378 1.3868 45 1 2.3460 -3.7263 2.1529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:42 Heat of formation + Delta-G solvation = -78.503110 kcal Electronic energy + Delta-G solvation = -21644.876126 eV Core-core repulsion = 18660.601390 eV Total energy + Delta-G solvation = -2984.274735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06686 -37.60903 -35.56865 -34.16803 -32.23104 -30.38369 -30.00248 -29.08082 -26.82986 -24.04062 -23.05093 -22.57354 -21.71537 -20.68253 -19.57446 -18.52686 -17.22418 -16.30504 -16.16692 -15.02541 -14.83559 -14.48934 -14.23827 -14.11064 -13.74561 -13.55753 -13.23691 -12.96139 -12.84301 -12.45777 -12.08692 -11.92130 -11.71850 -11.41544 -11.36968 -11.17423 -10.96000 -10.89617 -10.76566 -10.64804 -10.44636 -10.20919 -10.11980 -9.90546 -9.77540 -9.42683 -8.95635 -8.81168 -8.27242 -7.85058 -5.92320 -3.93616 3.36657 3.41169 3.43293 4.02602 4.12932 4.51259 4.51876 4.71252 4.80275 4.96776 5.03916 5.13067 5.22084 5.30847 5.40049 5.42866 5.51369 5.52317 5.62590 5.68884 5.79879 5.80260 5.87285 5.88543 5.92322 5.96472 6.06333 6.07163 6.22601 6.24618 6.35855 6.54116 6.69476 6.77410 7.07497 7.19979 7.28565 7.46348 7.52225 7.73065 7.76476 7.94550 8.09201 8.52214 9.12831 9.69360 11.19086 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.004101 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.556810 B = 6825.435147 C = 6947.942899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.112 4.112 12 C 0.058 3.942 13 N -0.518 5.518 14 C 0.095 3.905 15 H 0.083 0.917 16 C -0.155 4.155 17 C -0.117 4.117 18 C -0.118 4.118 19 C -0.152 4.152 20 C 0.113 3.887 21 H 0.055 0.945 22 O -0.547 6.547 23 C 0.053 3.947 24 C -0.098 4.098 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.368 0.632 42 H 0.027 0.973 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.375 -18.069 3.936 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.149 4.149 12 C -0.070 4.070 13 N -0.241 5.241 14 C -0.014 4.014 15 H 0.101 0.899 16 C -0.194 4.194 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.190 4.190 20 C 0.054 3.946 21 H 0.073 0.927 22 O -0.351 6.351 23 C -0.075 4.075 24 C -0.136 4.136 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.214 0.786 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.454 -17.947 3.782 21.625 hybrid contribution 1.486 0.979 -0.214 1.792 sum 12.940 -16.969 3.568 21.636 Atomic orbital electron populations 1.69958 1.06010 1.26503 1.51147 1.25014 0.94787 0.99064 0.95599 0.86722 0.79619 0.83515 0.78503 1.20393 1.21374 1.20311 1.21225 0.92848 0.91083 1.50042 0.92825 1.19113 0.93648 0.91042 0.97087 1.21219 0.97837 0.94769 0.96070 1.21682 0.97602 0.94274 1.01376 1.22132 0.96216 0.99308 0.89294 1.62121 1.27047 1.01038 1.33894 1.21643 0.92627 0.95156 0.91970 0.89932 1.22254 0.98176 0.98900 1.00055 1.21503 0.98813 0.98305 0.96848 1.21492 0.97478 1.01988 0.94574 1.22297 0.97737 0.99837 0.99113 1.21826 0.88302 0.95935 0.88576 0.92730 1.86690 1.34244 1.97218 1.16924 1.22256 0.95530 0.90282 0.99409 1.21526 0.97867 0.95362 0.98856 0.93077 0.96836 0.96497 0.93222 0.91592 0.92301 0.91846 0.95359 0.91103 0.91334 0.91923 0.91877 0.91898 0.91820 0.91734 0.91154 0.78619 0.95499 0.91740 0.91177 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.59 8.45 -34.44 -0.29 -14.88 16 8 H 0.05 1.48 7.08 -52.49 -0.37 1.10 16 9 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 10 C -0.08 -1.70 2.20 -90.50 -0.20 -1.90 16 11 C -0.11 -2.04 5.38 -26.65 -0.14 -2.19 16 12 C 0.06 0.90 5.02 -3.79 -0.02 0.88 16 13 N -0.52 -8.02 4.51 -226.62 -1.02 -9.04 16 14 C 0.10 1.20 1.93 -67.71 -0.13 1.07 16 15 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 16 C -0.15 -1.68 4.51 -26.73 -0.12 -1.80 16 17 C -0.12 -1.01 5.92 -26.73 -0.16 -1.16 16 18 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 19 C -0.15 -1.30 5.54 -26.73 -0.15 -1.45 16 20 C 0.11 1.27 2.59 -26.73 -0.07 1.20 16 21 H 0.05 0.63 6.29 -51.93 -0.33 0.31 16 22 O -0.55 -6.85 13.18 -35.23 -0.46 -7.31 16 23 C 0.05 0.85 4.64 -3.83 -0.02 0.83 16 24 C -0.10 -1.93 5.15 -26.65 -0.14 -2.07 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.03 0.43 6.72 -51.93 -0.35 0.08 16 33 H 0.07 0.80 6.64 -51.93 -0.35 0.46 16 34 H 0.07 0.79 6.53 -51.93 -0.34 0.45 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.37 2.99 9.08 45.56 0.41 3.41 16 42 H 0.03 0.42 6.62 -51.93 -0.34 0.08 16 43 H 0.06 0.98 6.02 -51.93 -0.31 0.66 16 44 H 0.07 1.45 7.05 -51.93 -0.37 1.09 16 45 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -31.37 333.22 -9.95 -41.33 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.39 Total: 0.18 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -1.81 Total: -20.42 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.29 Total: -35.70 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.46 Total: -7.31 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.37 -9.95 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.178 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds