Wall clock time and date at job start Mon Mar 30 2020 06:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47246 * 239.99977 * 3 2 1 5 5 H 1.48505 * 109.46688 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47416 * 119.99195 * 3 2 1 7 7 C 1.37880 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00218 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99930 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47402 * 179.97438 * 9 7 2 11 11 C 1.53119 * 109.52475 * 185.00034 * 10 9 7 12 12 C 1.53031 * 109.30890 * 182.42107 * 11 10 9 13 13 N 1.46927 * 109.48238 * 59.15613 * 12 11 10 14 14 C 1.46900 * 110.98551 * 174.18118 * 13 12 11 15 15 H 1.09000 * 109.47366 * 304.74321 * 14 13 12 16 16 C 1.52998 * 109.47496 * 64.74467 * 14 13 12 17 17 C 1.53001 * 109.47195 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47504 * 300.00149 * 17 16 14 19 19 C 1.52998 * 109.47016 * 59.99741 * 18 17 16 20 20 C 1.52999 * 109.47644 * 300.00165 * 19 18 17 21 21 H 1.09000 * 109.47255 * 300.00169 * 20 19 18 22 22 O 1.42899 * 109.47622 * 179.97438 * 20 19 18 23 23 C 1.46848 * 111.22142 * 298.28109 * 13 12 11 24 24 C 1.53038 * 109.52002 * 61.74093 * 23 13 12 25 25 H 0.96995 * 119.99999 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47105 * 59.99472 * 9 7 2 27 27 H 1.09004 * 109.46887 * 299.99728 * 9 7 2 28 28 H 1.09000 * 109.51942 * 305.12541 * 10 9 7 29 29 H 1.09001 * 109.49970 * 302.37912 * 11 10 9 30 30 H 1.08997 * 109.50066 * 62.45654 * 11 10 9 31 31 H 1.08998 * 109.46197 * 179.21666 * 12 11 10 32 32 H 1.09005 * 109.45928 * 299.17689 * 12 11 10 33 33 H 1.08999 * 109.47043 * 300.00282 * 16 14 13 34 34 H 1.09004 * 109.46813 * 60.00075 * 16 14 13 35 35 H 1.09001 * 109.47041 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.46911 * 60.00462 * 17 16 14 37 37 H 1.09004 * 109.47292 * 300.00080 * 18 17 16 38 38 H 1.08997 * 109.46958 * 180.02562 * 18 17 16 39 39 H 1.09002 * 109.47544 * 179.97438 * 19 18 17 40 40 H 1.09004 * 109.46813 * 60.00045 * 19 18 17 41 41 H 0.96700 * 113.99377 * 60.00017 * 22 20 19 42 42 H 1.08996 * 109.46115 * 301.72748 * 23 13 12 43 43 H 1.08996 * 109.46478 * 181.75841 * 23 13 12 44 44 H 1.09000 * 109.49988 * 180.87737 * 24 23 13 45 45 H 1.09000 * 109.53285 * 60.78390 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6622 0.0005 11 6 1.4850 -4.9853 -0.1253 12 6 2.4786 -6.1476 -0.0640 13 7 3.2097 -6.1007 1.2096 14 6 4.0738 -7.2786 1.3639 15 1 3.4758 -8.1840 1.2598 16 6 5.1605 -7.2587 0.2871 17 6 6.0608 -8.4853 0.4483 18 6 6.7133 -8.4608 1.8319 19 6 5.6265 -8.4807 2.9087 20 6 4.7263 -7.2542 2.7477 21 1 5.3240 -6.3486 2.8515 22 8 3.7109 -7.2731 3.7530 23 6 3.9852 -4.8597 1.3319 24 6 3.0360 -3.6594 1.3117 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 2.9312 -3.5549 -0.8397 29 1 0.7707 -5.0737 0.6933 30 1 0.9535 -5.0106 -1.0765 31 1 1.9386 -7.0914 -0.1394 32 1 3.1842 -6.0661 -0.8909 33 1 4.6957 -7.2757 -0.6986 34 1 5.7586 -6.3533 0.3913 35 1 6.8353 -8.4708 -0.3185 36 1 5.4630 -9.3908 0.3444 37 1 7.3111 -7.5552 1.9358 38 1 7.3550 -9.3344 1.9465 39 1 6.0913 -8.4638 3.8945 40 1 5.0288 -9.3863 2.8048 41 1 4.0527 -7.2594 4.6574 42 1 4.6837 -4.7843 0.4986 43 1 4.5394 -4.8687 2.2704 44 1 3.6131 -2.7378 1.3868 45 1 2.3460 -3.7263 2.1529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384054.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:41 Heat of formation + Delta-G solvation = -99.690335 kcal Electronic energy + Delta-G solvation = -21645.794873 eV Core-core repulsion = 18660.601390 eV Total energy + Delta-G solvation = -2985.193482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11659 -38.84972 -36.51189 -35.71919 -34.13245 -31.78664 -30.98893 -30.32783 -28.40288 -25.73209 -24.28903 -23.77240 -22.82153 -21.93754 -20.80702 -19.89029 -18.41796 -18.08876 -17.35597 -16.51916 -16.08261 -15.73735 -15.34663 -15.25436 -15.03283 -14.70522 -14.49308 -14.34596 -13.94013 -13.75727 -13.60285 -13.34599 -13.04860 -12.87634 -12.69403 -12.47593 -12.45913 -12.26639 -12.17144 -11.84871 -11.66010 -11.65266 -11.56557 -11.25988 -11.12713 -10.81057 -10.65608 -10.62148 -10.49519 -9.02987 -8.16511 -6.26608 1.39342 1.42645 1.50291 2.42248 2.94274 3.16315 3.30746 3.76013 3.89597 4.02604 4.04291 4.07664 4.13037 4.25486 4.28337 4.36307 4.39556 4.47771 4.52409 4.59910 4.64402 4.73425 4.81051 4.88398 4.91186 4.96861 5.04046 5.13733 5.15153 5.17662 5.21441 5.26452 5.29806 5.38288 5.42286 5.45358 5.49025 5.57769 5.81386 5.89600 6.24216 6.27964 6.33649 6.89155 7.03189 7.41656 8.95471 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031016 B = 0.004101 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.556810 B = 6825.435147 C = 6947.942899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.061 0.939 9 C 0.034 3.966 10 C -0.072 4.072 11 C -0.107 4.107 12 C 0.066 3.934 13 N -0.535 5.535 14 C 0.094 3.906 15 H 0.079 0.921 16 C -0.149 4.149 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.143 4.143 20 C 0.112 3.888 21 H 0.051 0.949 22 O -0.573 6.573 23 C 0.066 3.934 24 C -0.092 4.092 25 H 0.262 0.738 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.385 0.615 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.056 0.944 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.912 -19.168 4.075 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.079 0.921 9 C -0.003 4.003 10 C -0.091 4.091 11 C -0.145 4.145 12 C -0.062 4.062 13 N -0.258 5.258 14 C -0.015 4.015 15 H 0.097 0.903 16 C -0.189 4.189 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.181 4.181 20 C 0.053 3.947 21 H 0.069 0.931 22 O -0.379 6.379 23 C -0.061 4.061 24 C -0.130 4.130 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.003 0.997 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.234 0.766 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.014 -19.069 3.932 23.989 hybrid contribution 0.623 1.303 -0.234 1.463 sum 14.638 -17.766 3.699 23.315 Atomic orbital electron populations 1.70107 1.07870 1.27636 1.52110 1.25979 0.95696 1.03284 0.95006 0.85549 0.78300 0.78327 0.79171 1.19163 1.20989 1.19151 1.21615 0.93364 0.92076 1.49778 0.92120 1.19003 0.94008 0.93168 0.94121 1.21063 0.96882 0.94201 0.96961 1.21593 0.97873 0.94111 1.00904 1.22025 0.95799 0.98402 0.89927 1.62062 1.28122 1.01764 1.33844 1.21741 0.92756 0.93355 0.93609 0.90264 1.22188 0.97831 0.99844 0.99000 1.21494 0.98710 0.97193 0.97747 1.21503 0.97325 1.02825 0.93704 1.22219 0.97381 0.98182 1.00361 1.21864 0.88156 0.97150 0.87552 0.93141 1.86637 1.35556 1.97337 1.18406 1.22050 0.94528 0.89089 1.00463 1.21396 0.97805 0.96827 0.97002 0.92936 0.99624 0.99687 0.93242 0.93210 0.92000 0.90134 0.94345 0.91577 0.91954 0.90881 0.91436 0.91866 0.90118 0.90099 0.91326 0.76642 0.94662 0.90473 0.92572 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.77 13.29 21.45 0.28 -58.48 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.53 -30.81 8.45 25.60 0.22 -30.60 16 8 H 0.06 3.36 7.08 -2.91 -0.02 3.34 16 9 C 0.03 1.88 4.45 29.85 0.13 2.01 16 10 C -0.07 -3.14 2.20 -10.72 -0.02 -3.16 16 11 C -0.11 -3.98 5.38 30.64 0.16 -3.81 16 12 C 0.07 1.98 5.02 86.31 0.43 2.41 16 13 N -0.53 -15.96 4.51 -870.90 -3.93 -19.89 16 14 C 0.09 2.18 1.93 44.92 0.09 2.27 16 15 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 16 C -0.15 -2.90 4.51 30.59 0.14 -2.76 16 17 C -0.11 -1.62 5.92 30.59 0.18 -1.44 16 18 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 19 C -0.14 -2.04 5.54 30.59 0.17 -1.87 16 20 C 0.11 2.28 2.59 30.60 0.08 2.36 16 21 H 0.05 1.07 6.29 -2.39 -0.02 1.05 16 22 O -0.57 -13.48 13.18 -148.98 -1.96 -15.45 16 23 C 0.07 2.07 4.64 86.33 0.40 2.47 16 24 C -0.09 -3.69 5.15 30.64 0.16 -3.54 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 26 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 27 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 28 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.08 2.15 8.08 -2.39 -0.02 2.14 16 32 H 0.04 1.09 6.72 -2.38 -0.02 1.07 16 33 H 0.07 1.34 6.64 -2.39 -0.02 1.33 16 34 H 0.06 1.29 6.53 -2.38 -0.02 1.28 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.39 5.64 9.08 -74.06 -0.67 4.97 16 42 H 0.04 1.06 6.62 -2.39 -0.02 1.04 16 43 H 0.08 2.23 6.02 -2.39 -0.01 2.22 16 44 H 0.06 2.36 7.05 -2.39 -0.02 2.34 16 45 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -68.73 333.22 -0.53 -69.25 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.28 Total: 13.96 kcal Atomic # 6 Polarization: -39.40 SS G_CDS: 2.78 Total: -36.62 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.64 Total: -78.37 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -1.96 Total: -15.45 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.73 -0.53 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384054.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.439 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds