Wall clock time and date at job start Mon Mar 30 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99794 * 3 2 1 5 5 H 1.48503 * 109.47202 * 30.00147 * 3 2 1 6 6 H 1.48504 * 109.47403 * 149.99885 * 3 2 1 7 7 C 1.37877 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47241 * 180.02562 * 9 7 2 11 11 C 1.53118 * 109.52519 * 175.00476 * 10 9 7 12 12 C 1.53034 * 109.27989 * 177.55962 * 11 10 9 13 13 N 1.46843 * 109.52457 * 300.81988 * 12 11 10 14 14 C 1.46906 * 111.00119 * 185.84349 * 13 12 11 15 15 H 1.09004 * 109.46580 * 298.77711 * 14 13 12 16 16 C 1.53001 * 109.46878 * 178.78247 * 14 13 12 17 17 C 1.53006 * 109.46642 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47027 * 59.99946 * 17 16 14 19 19 C 1.53003 * 109.46947 * 299.99697 * 18 17 16 20 20 C 1.52997 * 109.47058 * 60.00688 * 19 18 17 21 21 H 1.09005 * 109.47004 * 180.02562 * 20 19 18 22 22 O 1.42891 * 109.47384 * 59.99487 * 20 19 18 23 23 C 1.46840 * 111.20143 * 61.74151 * 13 12 11 24 24 C 1.53038 * 109.52188 * 298.26076 * 23 13 12 25 25 H 0.97008 * 120.00304 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46826 * 60.00087 * 9 7 2 27 27 H 1.09000 * 109.47097 * 300.00875 * 9 7 2 28 28 H 1.08995 * 109.52340 * 54.87166 * 10 9 7 29 29 H 1.08994 * 109.50685 * 57.61524 * 11 10 9 30 30 H 1.09007 * 109.52910 * 297.51819 * 11 10 9 31 31 H 1.09003 * 109.46446 * 180.80011 * 12 11 10 32 32 H 1.09004 * 109.45275 * 60.82790 * 12 11 10 33 33 H 1.08997 * 109.47235 * 59.99551 * 16 14 13 34 34 H 1.08999 * 109.46669 * 299.99034 * 16 14 13 35 35 H 1.08997 * 109.47085 * 299.99891 * 17 16 14 36 36 H 1.09003 * 109.46439 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.46915 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.47233 * 60.00036 * 18 17 16 39 39 H 1.09000 * 109.47179 * 299.99762 * 19 18 17 40 40 H 1.09006 * 109.46642 * 180.02562 * 19 18 17 41 41 H 0.96706 * 113.99899 * 60.00678 * 22 20 19 42 42 H 1.09002 * 109.46324 * 58.26949 * 23 13 12 43 43 H 1.08999 * 109.46499 * 178.24704 * 23 13 12 44 44 H 1.09003 * 109.50689 * 299.23625 * 24 23 13 45 45 H 1.09004 * 109.53521 * 179.13728 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5474 -2.6398 -0.1262 12 6 6.0564 -4.0817 -0.0642 13 7 5.6515 -4.6909 1.2090 14 6 6.2397 -6.0281 1.3636 15 1 5.8879 -6.6748 0.5597 16 6 5.8207 -6.6168 2.7122 17 6 6.4329 -8.0098 2.8728 18 6 7.9582 -7.9065 2.8132 19 6 8.3771 -7.3177 1.4645 20 6 7.7651 -5.9248 1.3040 21 1 8.0632 -5.5055 0.3429 22 8 8.2266 -5.0773 2.3578 23 6 4.1891 -4.7418 1.3320 24 6 3.6243 -3.3196 1.3117 25 1 -0.4851 0.8401 -0.0004 26 1 3.8751 -0.6797 0.8895 27 1 3.8745 -0.6807 -0.8904 28 1 3.5852 -3.1772 -0.8398 29 1 5.9815 -2.0652 0.6919 30 1 5.8353 -2.1928 -1.0778 31 1 7.1438 -4.0866 -0.1396 32 1 5.6326 -4.6521 -0.8908 33 1 4.7340 -6.6907 2.7545 34 1 6.1725 -5.9701 3.5159 35 1 6.0808 -8.6563 2.0690 36 1 6.1347 -8.4290 3.8338 37 1 8.3943 -8.8988 2.9281 38 1 8.3103 -7.2600 3.6170 39 1 8.0251 -7.9643 0.6607 40 1 9.4639 -7.2446 1.4220 41 1 9.1869 -4.9659 2.3809 42 1 3.7742 -5.3092 0.4989 43 1 3.9202 -5.2260 2.2707 44 1 4.0281 -2.7556 2.1525 45 1 2.5376 -3.3579 1.3875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:44 Heat of formation + Delta-G solvation = -72.798094 kcal Electronic energy + Delta-G solvation = -21630.853242 eV Core-core repulsion = 18646.825894 eV Total energy + Delta-G solvation = -2984.027347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.98315 -37.81644 -35.17036 -34.22487 -32.22332 -30.82552 -29.88101 -29.47771 -27.24006 -23.90465 -23.52387 -21.79870 -21.55361 -20.39057 -19.72820 -18.89038 -16.93692 -16.69962 -16.38405 -15.06223 -14.95538 -14.55088 -14.25705 -14.08212 -13.51282 -13.45666 -13.25590 -13.06728 -12.84643 -12.50266 -12.34975 -11.89218 -11.80896 -11.71837 -11.41915 -11.25465 -10.92770 -10.80363 -10.65130 -10.62796 -10.54504 -10.24696 -9.96144 -9.78577 -9.61135 -9.45445 -9.16594 -8.91877 -8.46348 -7.95787 -5.97527 -3.93996 3.35706 3.43108 3.48456 3.95859 4.20952 4.51968 4.53712 4.67849 4.76087 5.02123 5.10480 5.21709 5.26856 5.33161 5.36187 5.38426 5.45771 5.55544 5.60717 5.65140 5.73465 5.75905 5.86505 5.92153 5.99912 6.02550 6.05865 6.09553 6.16941 6.29910 6.37745 6.47708 6.58572 6.66329 6.94282 7.03690 7.13119 7.34558 7.40223 7.48729 7.59440 7.68640 7.88562 8.62250 9.07900 9.66114 11.15980 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039827 B = 0.004061 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.876972 B = 6893.261020 C = 7243.942003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.064 3.936 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.072 4.072 11 C -0.113 4.113 12 C 0.058 3.942 13 N -0.521 5.521 14 C 0.095 3.905 15 H 0.043 0.957 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.153 4.153 20 C 0.113 3.887 21 H 0.052 0.948 22 O -0.541 6.541 23 C 0.052 3.948 24 C -0.099 4.099 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.009 0.991 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.366 0.634 42 H 0.025 0.975 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.900 -15.701 3.495 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.150 4.150 12 C -0.070 4.070 13 N -0.246 5.246 14 C -0.014 4.014 15 H 0.061 0.939 16 C -0.149 4.149 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.191 4.191 20 C 0.053 3.947 21 H 0.070 0.930 22 O -0.344 6.344 23 C -0.075 4.075 24 C -0.137 4.137 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.211 0.789 42 H 0.043 0.957 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.262 -15.246 3.998 23.375 hybrid contribution 0.626 0.327 -0.969 1.199 sum 17.888 -14.919 3.028 23.489 Atomic orbital electron populations 1.69917 1.06283 1.26712 1.51711 1.25028 0.94689 0.99102 0.94782 0.86803 0.80474 0.83786 0.78373 1.20479 1.21533 1.18957 1.21169 0.89573 0.94261 1.50052 0.90996 1.19611 0.97012 0.91901 0.96089 1.21042 0.92494 0.98714 0.96859 1.21697 0.97515 0.94590 1.01233 1.22123 0.99358 0.96278 0.89202 1.61900 1.09546 1.19151 1.33963 1.21569 0.92288 0.90125 0.97414 0.93882 1.21576 1.00103 0.95638 0.97596 1.21531 0.95373 0.97164 1.01523 1.21437 0.96082 1.00221 0.97433 1.22275 1.00398 0.97685 0.98724 1.21796 0.93928 0.88774 0.90200 0.92984 1.86694 1.25852 1.69363 1.52526 1.22276 0.86361 0.98900 0.99962 1.21537 1.00880 0.92976 0.98322 0.92898 0.96538 0.97310 0.92606 0.91564 0.92387 0.91570 0.95762 0.91796 0.90074 0.92467 0.91851 0.92492 0.91182 0.91374 0.91762 0.78877 0.95689 0.91049 0.91901 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.34 13.96 55.43 0.77 -27.56 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.24 27.47 -169.99 -4.67 17.58 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.51 -14.70 9.00 -34.44 -0.31 -15.01 16 8 H 0.07 2.20 7.33 -52.49 -0.38 1.82 16 9 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.48 2.20 -90.50 -0.20 -1.68 16 11 C -0.11 -1.94 5.38 -26.65 -0.14 -2.08 16 12 C 0.06 0.87 5.20 -3.84 -0.02 0.85 16 13 N -0.52 -7.82 4.39 -226.69 -1.00 -8.82 16 14 C 0.09 1.17 1.73 -67.71 -0.12 1.05 16 15 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 16 C -0.11 -1.29 4.74 -26.73 -0.13 -1.42 16 17 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 18 C -0.11 -0.95 5.78 -26.73 -0.15 -1.11 16 19 C -0.15 -1.24 5.64 -26.73 -0.15 -1.39 16 20 C 0.11 1.17 2.84 -26.73 -0.08 1.10 16 21 H 0.05 0.54 6.26 -51.93 -0.32 0.22 16 22 O -0.54 -6.06 11.84 -35.23 -0.42 -6.48 16 23 C 0.05 0.84 5.16 -3.84 -0.02 0.82 16 24 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 27 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 31 H 0.07 0.89 5.97 -51.93 -0.31 0.58 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.76 6.23 -51.93 -0.32 0.43 16 34 H 0.08 1.08 7.68 -51.93 -0.40 0.68 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.37 2.60 9.08 45.56 0.41 3.01 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 1.07 5.93 -51.93 -0.31 0.76 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.08 1.62 7.05 -51.93 -0.37 1.25 16 LS Contribution 330.13 15.07 4.98 4.98 Total: -1.00 -31.59 330.13 -9.55 -41.14 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.41 Total: -0.15 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -1.81 Total: -20.68 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.22 Total: -36.38 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.42 Total: -6.48 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.58 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.59 -9.55 -41.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.660 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds