Wall clock time and date at job start Mon Mar 30 2020 06:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00146 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99794 * 3 2 1 5 5 H 1.48503 * 109.47202 * 30.00147 * 3 2 1 6 6 H 1.48504 * 109.47403 * 149.99885 * 3 2 1 7 7 C 1.37877 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00237 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00023 * 179.97438 * 7 2 1 10 10 C 1.52994 * 109.47241 * 180.02562 * 9 7 2 11 11 C 1.53118 * 109.52519 * 175.00476 * 10 9 7 12 12 C 1.53034 * 109.27989 * 177.55962 * 11 10 9 13 13 N 1.46843 * 109.52457 * 300.81988 * 12 11 10 14 14 C 1.46906 * 111.00119 * 185.84349 * 13 12 11 15 15 H 1.09004 * 109.46580 * 298.77711 * 14 13 12 16 16 C 1.53001 * 109.46878 * 178.78247 * 14 13 12 17 17 C 1.53006 * 109.46642 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47027 * 59.99946 * 17 16 14 19 19 C 1.53003 * 109.46947 * 299.99697 * 18 17 16 20 20 C 1.52997 * 109.47058 * 60.00688 * 19 18 17 21 21 H 1.09005 * 109.47004 * 180.02562 * 20 19 18 22 22 O 1.42891 * 109.47384 * 59.99487 * 20 19 18 23 23 C 1.46840 * 111.20143 * 61.74151 * 13 12 11 24 24 C 1.53038 * 109.52188 * 298.26076 * 23 13 12 25 25 H 0.97008 * 120.00304 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46826 * 60.00087 * 9 7 2 27 27 H 1.09000 * 109.47097 * 300.00875 * 9 7 2 28 28 H 1.08995 * 109.52340 * 54.87166 * 10 9 7 29 29 H 1.08994 * 109.50685 * 57.61524 * 11 10 9 30 30 H 1.09007 * 109.52910 * 297.51819 * 11 10 9 31 31 H 1.09003 * 109.46446 * 180.80011 * 12 11 10 32 32 H 1.09004 * 109.45275 * 60.82790 * 12 11 10 33 33 H 1.08997 * 109.47235 * 59.99551 * 16 14 13 34 34 H 1.08999 * 109.46669 * 299.99034 * 16 14 13 35 35 H 1.08997 * 109.47085 * 299.99891 * 17 16 14 36 36 H 1.09003 * 109.46439 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.46915 * 179.97438 * 18 17 16 38 38 H 1.08997 * 109.47233 * 60.00036 * 18 17 16 39 39 H 1.09000 * 109.47179 * 299.99762 * 19 18 17 40 40 H 1.09006 * 109.46642 * 180.02562 * 19 18 17 41 41 H 0.96706 * 113.99899 * 60.00678 * 22 20 19 42 42 H 1.09002 * 109.46324 * 58.26949 * 23 13 12 43 43 H 1.08999 * 109.46499 * 178.24704 * 23 13 12 44 44 H 1.09003 * 109.50689 * 299.23625 * 24 23 13 45 45 H 1.09004 * 109.53521 * 179.13728 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5474 -2.6398 -0.1262 12 6 6.0564 -4.0817 -0.0642 13 7 5.6515 -4.6909 1.2090 14 6 6.2397 -6.0281 1.3636 15 1 5.8879 -6.6748 0.5597 16 6 5.8207 -6.6168 2.7122 17 6 6.4329 -8.0098 2.8728 18 6 7.9582 -7.9065 2.8132 19 6 8.3771 -7.3177 1.4645 20 6 7.7651 -5.9248 1.3040 21 1 8.0632 -5.5055 0.3429 22 8 8.2266 -5.0773 2.3578 23 6 4.1891 -4.7418 1.3320 24 6 3.6243 -3.3196 1.3117 25 1 -0.4851 0.8401 -0.0004 26 1 3.8751 -0.6797 0.8895 27 1 3.8745 -0.6807 -0.8904 28 1 3.5852 -3.1772 -0.8398 29 1 5.9815 -2.0652 0.6919 30 1 5.8353 -2.1928 -1.0778 31 1 7.1438 -4.0866 -0.1396 32 1 5.6326 -4.6521 -0.8908 33 1 4.7340 -6.6907 2.7545 34 1 6.1725 -5.9701 3.5159 35 1 6.0808 -8.6563 2.0690 36 1 6.1347 -8.4290 3.8338 37 1 8.3943 -8.8988 2.9281 38 1 8.3103 -7.2600 3.6170 39 1 8.0251 -7.9643 0.6607 40 1 9.4639 -7.2446 1.4220 41 1 9.1869 -4.9659 2.3809 42 1 3.7742 -5.3092 0.4989 43 1 3.9202 -5.2260 2.2707 44 1 4.0281 -2.7556 2.1525 45 1 2.5376 -3.3579 1.3875 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:43 Heat of formation + Delta-G solvation = -94.435081 kcal Electronic energy + Delta-G solvation = -21631.791492 eV Core-core repulsion = 18646.825894 eV Total energy + Delta-G solvation = -2984.965598 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98649 -39.01462 -36.17224 -35.60850 -34.19271 -32.02433 -31.14448 -30.60971 -28.70384 -25.52425 -24.64375 -23.02073 -22.61124 -21.80935 -20.63750 -20.40440 -18.86017 -17.77243 -17.38031 -16.34537 -16.05162 -15.90255 -15.61797 -15.21310 -15.03592 -14.73379 -14.53598 -14.29427 -14.15180 -13.90599 -13.49638 -13.27110 -13.12956 -12.90284 -12.70694 -12.44510 -12.30232 -12.10854 -12.07185 -11.90718 -11.72450 -11.66178 -11.43079 -11.27281 -11.04256 -10.84469 -10.73689 -10.66611 -10.42928 -9.13338 -8.26736 -6.28849 1.34799 1.37225 1.49529 2.37553 2.89040 3.08628 3.43102 3.77803 3.90688 3.93744 4.04623 4.08197 4.13104 4.23517 4.34407 4.36739 4.48823 4.49776 4.54043 4.60070 4.67405 4.73038 4.80917 4.84296 4.93214 4.94413 5.02620 5.08769 5.10879 5.22635 5.23963 5.28330 5.29782 5.34688 5.37885 5.41208 5.50957 5.58640 5.71593 5.74789 6.21651 6.30962 6.34581 6.77966 7.08768 7.34875 8.90037 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.039827 B = 0.004061 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.876972 B = 6893.261020 C = 7243.942003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.250 1.250 7 C -0.519 4.519 8 H 0.033 0.967 9 C -0.005 4.005 10 C -0.070 4.070 11 C -0.105 4.105 12 C 0.063 3.937 13 N -0.531 5.531 14 C 0.090 3.910 15 H 0.047 0.953 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.146 4.146 20 C 0.114 3.886 21 H 0.056 0.944 22 O -0.562 6.562 23 C 0.063 3.937 24 C -0.094 4.094 25 H 0.265 0.735 26 H 0.014 0.986 27 H 0.015 0.985 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.027 0.973 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.383 0.617 42 H 0.024 0.976 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.011 -16.292 3.260 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.174 1.174 7 C -0.557 4.557 8 H 0.052 0.948 9 C -0.042 4.042 10 C -0.089 4.089 11 C -0.143 4.143 12 C -0.065 4.065 13 N -0.256 5.256 14 C -0.018 4.018 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.184 4.184 20 C 0.055 3.945 21 H 0.074 0.926 22 O -0.369 6.369 23 C -0.065 4.065 24 C -0.132 4.132 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.231 0.769 42 H 0.042 0.958 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.405 -15.856 3.762 26.114 hybrid contribution -0.409 0.450 -0.869 1.060 sum 19.996 -15.406 2.893 25.408 Atomic orbital electron populations 1.70070 1.08210 1.27939 1.53254 1.25987 0.95576 1.03371 0.94461 0.85691 0.79456 0.78572 0.79124 1.19148 1.21054 1.17377 1.21465 0.91958 0.92922 1.49387 0.94819 1.19563 0.94003 0.94697 0.95969 1.20965 0.95100 0.96052 0.96772 1.21605 0.94419 0.96569 1.01707 1.22089 1.00627 0.94522 0.89257 1.61885 1.08314 1.21225 1.34130 1.21723 0.93871 0.88532 0.97718 0.93499 1.21524 0.99663 0.96794 0.96617 1.21525 0.96147 0.95535 1.02131 1.21427 0.95175 1.00987 0.97390 1.22233 1.01456 0.96096 0.98651 1.21773 0.92355 0.90198 0.90166 0.92591 1.86648 1.27688 1.69691 1.52838 1.22076 0.87599 0.96315 1.00484 1.21403 0.99055 0.95241 0.97530 0.92668 0.96772 0.96682 0.93787 0.92099 0.91089 0.89243 0.95485 0.92700 0.92030 0.91765 0.91308 0.90872 0.91998 0.90734 0.89806 0.76855 0.95812 0.90130 0.92874 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.95 45.87 27.47 68.60 1.88 47.75 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 7 C -0.52 -30.75 9.00 25.60 0.23 -30.52 16 8 H 0.03 2.19 7.33 -2.91 -0.02 2.16 16 9 C 0.00 -0.24 3.52 29.85 0.11 -0.14 16 10 C -0.07 -2.88 2.20 -10.71 -0.02 -2.91 16 11 C -0.11 -3.46 5.38 30.65 0.16 -3.30 16 12 C 0.06 1.73 5.20 86.33 0.45 2.18 16 13 N -0.53 -15.24 4.39 -871.12 -3.83 -19.06 16 14 C 0.09 2.04 1.73 44.91 0.08 2.12 16 15 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 16 C -0.11 -2.38 4.74 30.60 0.15 -2.24 16 17 C -0.12 -1.88 5.92 30.60 0.18 -1.70 16 18 C -0.11 -1.55 5.78 30.59 0.18 -1.37 16 19 C -0.15 -1.87 5.64 30.59 0.17 -1.70 16 20 C 0.11 2.06 2.84 30.59 0.09 2.15 16 21 H 0.06 0.97 6.26 -2.38 -0.01 0.95 16 22 O -0.56 -11.26 11.84 -148.98 -1.76 -13.02 16 23 C 0.06 2.03 5.16 86.33 0.45 2.47 16 24 C -0.09 -3.76 5.15 30.65 0.16 -3.61 16 25 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 26 H 0.01 0.69 7.20 -2.38 -0.02 0.67 16 27 H 0.01 0.71 7.57 -2.39 -0.02 0.69 16 28 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 31 H 0.09 2.10 5.97 -2.39 -0.01 2.09 16 32 H 0.03 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.05 1.27 6.23 -2.39 -0.01 1.25 16 34 H 0.06 1.60 7.68 -2.39 -0.02 1.58 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.97 7.68 -2.39 -0.02 0.95 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 41 H 0.38 4.39 9.08 -74.05 -0.67 3.72 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.08 2.43 5.93 -2.39 -0.01 2.42 16 44 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.04 2.05 7.05 -2.38 -0.02 2.03 16 Total: -1.00 -69.35 330.13 -0.35 -69.70 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.22 Total: 13.59 kcal Atomic # 6 Polarization: -40.80 SS G_CDS: 2.83 Total: -37.97 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -3.53 Total: -80.06 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -1.76 Total: -13.02 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.75 kcal Total: -69.35 -0.35 -69.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.731 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds