Wall clock time and date at job start Mon Mar 30 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52315 * 294.68850 * 10 9 7 12 12 C 1.53037 * 109.28016 * 182.43926 * 11 10 9 13 13 N 1.46847 * 109.52255 * 59.17337 * 12 11 10 14 14 C 1.46907 * 111.00289 * 174.16079 * 13 12 11 15 15 H 1.08998 * 109.46625 * 74.21117 * 14 13 12 16 16 C 1.52999 * 109.47529 * 194.21105 * 14 13 12 17 17 C 1.52993 * 109.47186 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47403 * 300.00233 * 17 16 14 19 19 C 1.53009 * 109.46923 * 60.00035 * 18 17 16 20 20 C 1.52999 * 109.46823 * 314.21422 * 14 13 12 21 21 H 1.09004 * 109.47173 * 59.99723 * 20 14 13 22 22 O 1.42894 * 109.47367 * 299.99785 * 20 14 13 23 23 C 1.46844 * 111.20231 * 298.26226 * 13 12 11 24 24 C 1.53032 * 109.52479 * 61.74055 * 23 13 12 25 25 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 28 28 H 1.09005 * 109.52256 * 54.87544 * 10 9 7 29 29 H 1.09010 * 109.50049 * 302.37658 * 11 10 9 30 30 H 1.08994 * 109.50939 * 62.49552 * 11 10 9 31 31 H 1.09004 * 109.45999 * 299.16429 * 12 11 10 32 32 H 1.09000 * 109.46792 * 179.19072 * 12 11 10 33 33 H 1.09000 * 109.46743 * 300.00344 * 16 14 13 34 34 H 1.09002 * 109.46858 * 59.99934 * 16 14 13 35 35 H 1.09002 * 109.47235 * 60.00216 * 17 16 14 36 36 H 1.08994 * 109.47317 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47090 * 179.97438 * 18 17 16 38 38 H 1.09002 * 109.46911 * 300.00181 * 18 17 16 39 39 H 1.08998 * 109.47508 * 59.99924 * 19 18 17 40 40 H 1.08998 * 109.46789 * 180.02562 * 19 18 17 41 41 H 0.96699 * 114.00396 * 180.02562 * 22 20 14 42 42 H 1.09004 * 109.46235 * 301.72495 * 23 13 12 43 43 H 1.08997 * 109.46856 * 181.75877 * 23 13 12 44 44 H 1.08996 * 109.50461 * 180.88574 * 24 23 13 45 45 H 1.09004 * 109.50629 * 60.76424 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 3.0298 -3.6617 -1.3122 12 6 3.9790 -4.8620 -1.3346 13 7 3.2041 -6.1028 -1.2065 14 6 4.0674 -7.2812 -1.3628 15 1 4.6713 -7.4107 -0.4647 16 6 3.2007 -8.5235 -1.5781 17 6 4.0998 -9.7505 -1.7416 18 6 5.0174 -9.5532 -2.9498 19 6 5.8842 -8.3108 -2.7344 20 6 4.9854 -7.0841 -2.5708 21 1 5.6029 -6.1990 -2.4173 22 8 4.1936 -6.9141 -3.7481 23 6 2.4794 -6.1470 0.0699 24 6 1.4856 -4.9851 0.1343 25 1 -0.4850 0.8401 0.0004 26 1 0.6281 -2.5552 0.8979 27 1 0.6206 -2.5586 -0.8820 28 1 2.9351 -3.5534 0.8397 29 1 2.3359 -3.7308 -2.1500 30 1 3.6065 -2.7403 -1.3916 31 1 4.6813 -4.7851 -0.5045 32 1 4.5288 -4.8728 -2.2757 33 1 2.5466 -8.6637 -0.7175 34 1 2.5966 -8.3938 -2.4762 35 1 4.7041 -9.8803 -0.8437 36 1 3.4823 -10.6356 -1.8945 37 1 5.6583 -10.4272 -3.0660 38 1 4.4131 -9.4233 -3.8476 39 1 6.4885 -8.4405 -1.8366 40 1 6.5376 -8.1700 -3.5954 41 1 4.7110 -6.7842 -4.5547 42 1 3.1888 -6.0641 0.8934 43 1 1.9402 -7.0909 0.1491 44 1 0.9590 -5.0090 1.0883 45 1 0.7674 -5.0749 -0.6808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335384056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:46 Heat of formation + Delta-G solvation = -76.020115 kcal Electronic energy + Delta-G solvation = -21621.815401 eV Core-core repulsion = 18637.648336 eV Total energy + Delta-G solvation = -2984.167065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.97582 -37.71686 -35.13620 -34.15624 -32.22274 -30.71384 -29.92100 -29.16838 -26.86075 -23.96936 -23.44267 -21.95355 -21.50184 -20.51634 -19.69599 -18.78946 -16.90005 -16.44421 -16.17379 -15.01111 -14.91623 -14.55886 -14.39137 -14.03978 -13.41123 -13.40401 -13.11641 -13.04876 -12.92209 -12.28381 -12.12780 -11.90809 -11.73778 -11.44311 -11.27403 -11.06090 -11.02504 -10.73322 -10.66141 -10.56002 -10.53908 -10.18967 -10.15184 -9.83034 -9.68788 -9.39905 -8.95287 -8.80224 -8.27242 -7.91008 -5.92371 -3.93613 3.36707 3.41150 3.43346 3.99289 4.25010 4.51362 4.55575 4.70394 4.79255 5.04458 5.13509 5.25851 5.30192 5.37332 5.41080 5.42842 5.54617 5.59188 5.62836 5.70595 5.77532 5.81461 5.91152 5.97863 6.02476 6.06644 6.10662 6.15404 6.22997 6.35685 6.44607 6.56705 6.69250 6.77699 7.07605 7.20565 7.28731 7.46966 7.53389 7.71306 7.76475 7.94539 8.09184 8.52304 9.12844 9.69327 11.19027 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.004011 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.355910 B = 6979.506215 C = 7407.722965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.097 4.097 12 C 0.054 3.946 13 N -0.521 5.521 14 C 0.095 3.905 15 H 0.044 0.956 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.114 4.114 19 C -0.152 4.152 20 C 0.108 3.892 21 H 0.056 0.944 22 O -0.541 6.541 23 C 0.057 3.943 24 C -0.111 4.111 25 H 0.260 0.740 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.367 0.633 42 H 0.024 0.976 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.974 -18.873 -4.851 22.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.100 4.100 11 C -0.135 4.135 12 C -0.073 4.073 13 N -0.246 5.246 14 C -0.014 4.014 15 H 0.061 0.939 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.191 4.191 20 C 0.048 3.952 21 H 0.073 0.927 22 O -0.345 6.345 23 C -0.070 4.070 24 C -0.149 4.149 25 H 0.069 0.931 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.213 0.787 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.975 -18.820 -4.781 21.830 hybrid contribution 1.615 1.070 0.373 1.973 sum 11.590 -17.750 -4.408 21.653 Atomic orbital electron populations 1.69960 1.06012 1.26502 1.51146 1.25018 0.94794 0.99075 0.95599 0.86719 0.79617 0.83496 0.78509 1.20297 1.21375 1.20396 1.21227 0.92858 0.91088 1.50041 0.92820 1.19110 0.93642 0.91039 0.97074 1.21232 0.97878 0.94773 0.96099 1.21517 0.97877 0.95321 0.98781 1.22273 0.95424 0.90170 0.99441 1.61898 1.28022 1.00951 1.33682 1.21584 0.93237 0.91922 0.94627 0.93874 1.21486 0.97754 0.92300 1.02907 1.21528 0.98025 0.98067 0.97974 1.21438 0.97907 0.96657 0.99158 1.22270 0.98265 0.96405 1.02135 1.21860 0.91386 0.95428 0.86505 0.92654 1.86693 1.36040 1.95205 1.16567 1.22157 0.96475 0.99439 0.88969 1.21673 0.97579 0.94265 1.01334 0.93077 0.96859 0.96483 0.93253 0.91794 0.91182 0.96133 0.91151 0.92192 0.90124 0.92547 0.91928 0.92521 0.91156 0.91391 0.91723 0.78729 0.95792 0.91563 0.92316 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -14.62 8.44 -34.44 -0.29 -14.91 16 8 H 0.05 1.48 7.09 -52.49 -0.37 1.11 16 9 C 0.03 0.75 4.45 -27.88 -0.12 0.62 16 10 C -0.08 -1.72 2.20 -90.49 -0.20 -1.92 16 11 C -0.10 -1.92 5.15 -26.65 -0.14 -2.06 16 12 C 0.05 0.89 4.85 -3.83 -0.02 0.87 16 13 N -0.52 -8.07 4.39 -226.69 -0.99 -9.07 16 14 C 0.09 1.20 1.78 -67.71 -0.12 1.08 16 15 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 16 C -0.11 -1.24 5.07 -26.74 -0.14 -1.38 16 17 C -0.12 -1.09 5.92 -26.73 -0.16 -1.24 16 18 C -0.11 -0.97 5.78 -26.73 -0.15 -1.13 16 19 C -0.15 -1.30 5.63 -26.75 -0.15 -1.45 16 20 C 0.11 1.18 2.44 -26.76 -0.07 1.11 16 21 H 0.06 0.62 6.21 -51.93 -0.32 0.30 16 22 O -0.54 -6.36 11.63 -35.23 -0.41 -6.77 16 23 C 0.06 0.89 5.30 -3.84 -0.02 0.87 16 24 C -0.11 -2.03 5.38 -26.65 -0.14 -2.17 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 30 H 0.07 1.46 7.06 -51.93 -0.37 1.09 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 1.07 5.66 -51.93 -0.29 0.77 16 33 H 0.06 0.70 6.58 -51.93 -0.34 0.35 16 34 H 0.08 1.08 7.68 -51.93 -0.40 0.69 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.37 2.84 9.08 45.56 0.41 3.25 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.93 6.40 -51.93 -0.33 0.60 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 333.71 15.07 5.03 5.03 Total: -1.00 -31.18 333.71 -9.94 -41.12 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.46 Total: -0.37 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.82 Total: -20.18 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.26 Total: -35.75 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.41 Total: -6.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.18 -9.94 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.904 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds