Wall clock time and date at job start Mon Mar 30 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.53120 * 109.52315 * 294.68850 * 10 9 7 12 12 C 1.53037 * 109.28016 * 182.43926 * 11 10 9 13 13 N 1.46847 * 109.52255 * 59.17337 * 12 11 10 14 14 C 1.46907 * 111.00289 * 174.16079 * 13 12 11 15 15 H 1.08998 * 109.46625 * 74.21117 * 14 13 12 16 16 C 1.52999 * 109.47529 * 194.21105 * 14 13 12 17 17 C 1.52993 * 109.47186 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47403 * 300.00233 * 17 16 14 19 19 C 1.53009 * 109.46923 * 60.00035 * 18 17 16 20 20 C 1.52999 * 109.46823 * 314.21422 * 14 13 12 21 21 H 1.09004 * 109.47173 * 59.99723 * 20 14 13 22 22 O 1.42894 * 109.47367 * 299.99785 * 20 14 13 23 23 C 1.46844 * 111.20231 * 298.26226 * 13 12 11 24 24 C 1.53032 * 109.52479 * 61.74055 * 23 13 12 25 25 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 27 27 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 28 28 H 1.09005 * 109.52256 * 54.87544 * 10 9 7 29 29 H 1.09010 * 109.50049 * 302.37658 * 11 10 9 30 30 H 1.08994 * 109.50939 * 62.49552 * 11 10 9 31 31 H 1.09004 * 109.45999 * 299.16429 * 12 11 10 32 32 H 1.09000 * 109.46792 * 179.19072 * 12 11 10 33 33 H 1.09000 * 109.46743 * 300.00344 * 16 14 13 34 34 H 1.09002 * 109.46858 * 59.99934 * 16 14 13 35 35 H 1.09002 * 109.47235 * 60.00216 * 17 16 14 36 36 H 1.08994 * 109.47317 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47090 * 179.97438 * 18 17 16 38 38 H 1.09002 * 109.46911 * 300.00181 * 18 17 16 39 39 H 1.08998 * 109.47508 * 59.99924 * 19 18 17 40 40 H 1.08998 * 109.46789 * 180.02562 * 19 18 17 41 41 H 0.96699 * 114.00396 * 180.02562 * 22 20 14 42 42 H 1.09004 * 109.46235 * 301.72495 * 23 13 12 43 43 H 1.08997 * 109.46856 * 181.75877 * 23 13 12 44 44 H 1.08996 * 109.50461 * 180.88574 * 24 23 13 45 45 H 1.09004 * 109.50629 * 60.76424 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 3.0298 -3.6617 -1.3122 12 6 3.9790 -4.8620 -1.3346 13 7 3.2041 -6.1028 -1.2065 14 6 4.0674 -7.2812 -1.3628 15 1 4.6713 -7.4107 -0.4647 16 6 3.2007 -8.5235 -1.5781 17 6 4.0998 -9.7505 -1.7416 18 6 5.0174 -9.5532 -2.9498 19 6 5.8842 -8.3108 -2.7344 20 6 4.9854 -7.0841 -2.5708 21 1 5.6029 -6.1990 -2.4173 22 8 4.1936 -6.9141 -3.7481 23 6 2.4794 -6.1470 0.0699 24 6 1.4856 -4.9851 0.1343 25 1 -0.4850 0.8401 0.0004 26 1 0.6281 -2.5552 0.8979 27 1 0.6206 -2.5586 -0.8820 28 1 2.9351 -3.5534 0.8397 29 1 2.3359 -3.7308 -2.1500 30 1 3.6065 -2.7403 -1.3916 31 1 4.6813 -4.7851 -0.5045 32 1 4.5288 -4.8728 -2.2757 33 1 2.5466 -8.6637 -0.7175 34 1 2.5966 -8.3938 -2.4762 35 1 4.7041 -9.8803 -0.8437 36 1 3.4823 -10.6356 -1.8945 37 1 5.6583 -10.4272 -3.0660 38 1 4.4131 -9.4233 -3.8476 39 1 6.4885 -8.4405 -1.8366 40 1 6.5376 -8.1700 -3.5954 41 1 4.7110 -6.7842 -4.5547 42 1 3.1888 -6.0641 0.8934 43 1 1.9402 -7.0909 0.1491 44 1 0.9590 -5.0090 1.0883 45 1 0.7674 -5.0749 -0.6808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335384056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:46 Heat of formation + Delta-G solvation = -96.657111 kcal Electronic energy + Delta-G solvation = -21622.710288 eV Core-core repulsion = 18637.648336 eV Total energy + Delta-G solvation = -2985.061952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00786 -38.97621 -36.14635 -35.64889 -34.12973 -31.94660 -31.07694 -30.39086 -28.47853 -25.71876 -24.60714 -23.21012 -22.62287 -21.88290 -20.61310 -20.36779 -18.42254 -17.78300 -17.40450 -16.52170 -16.02718 -15.91592 -15.55467 -15.16425 -14.92783 -14.63358 -14.49170 -14.34688 -13.96368 -13.74782 -13.45145 -13.21693 -13.07587 -12.75425 -12.66358 -12.59307 -12.37819 -12.17731 -12.06393 -12.04177 -11.71187 -11.67647 -11.40307 -11.28194 -11.02500 -10.72799 -10.66823 -10.54129 -10.43322 -9.11179 -8.16846 -6.26947 1.39130 1.42505 1.50162 2.42046 2.90173 3.15907 3.42919 3.76999 3.91730 3.96583 4.07951 4.10937 4.12788 4.25973 4.34904 4.38153 4.50713 4.51269 4.57061 4.61256 4.68186 4.75395 4.83363 4.86032 4.92616 4.96017 5.08065 5.09454 5.15063 5.26720 5.30535 5.31731 5.36119 5.39949 5.43251 5.45474 5.57157 5.61433 5.81163 5.89409 6.24530 6.28489 6.34966 6.88811 7.04543 7.41277 8.95110 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.037507 B = 0.004011 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.355910 B = 6979.506215 C = 7407.722965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.962 3.038 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.074 4.074 11 C -0.091 4.091 12 C 0.066 3.934 13 N -0.535 5.535 14 C 0.091 3.909 15 H 0.051 0.949 16 C -0.102 4.102 17 C -0.115 4.115 18 C -0.113 4.113 19 C -0.146 4.146 20 C 0.107 3.893 21 H 0.053 0.947 22 O -0.563 6.563 23 C 0.065 3.935 24 C -0.106 4.106 25 H 0.262 0.738 26 H -0.015 1.015 27 H -0.015 1.015 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.383 0.617 42 H 0.031 0.969 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.454 -20.042 -4.987 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.569 4.569 8 H 0.079 0.921 9 C -0.003 4.003 10 C -0.093 4.093 11 C -0.129 4.129 12 C -0.061 4.061 13 N -0.260 5.260 14 C -0.017 4.017 15 H 0.069 0.931 16 C -0.140 4.140 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.184 4.184 20 C 0.048 3.952 21 H 0.071 0.929 22 O -0.370 6.370 23 C -0.063 4.063 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.004 0.996 27 H 0.004 0.996 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.050 0.950 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.476 -20.009 -4.929 24.090 hybrid contribution 0.772 1.419 0.396 1.664 sum 13.248 -18.590 -4.533 23.273 Atomic orbital electron populations 1.70109 1.07865 1.27644 1.52085 1.25986 0.95711 1.03303 0.94999 0.85545 0.78300 0.78298 0.79179 1.19115 1.20970 1.19182 1.21618 0.93368 0.92102 1.49812 0.92139 1.18998 0.93994 0.93138 0.94129 1.21084 0.96924 0.94265 0.96978 1.21381 0.97805 0.96761 0.96922 1.22089 0.94438 0.89067 1.00516 1.61856 1.28970 1.01664 1.33534 1.21736 0.93332 0.90770 0.95887 0.93092 1.21438 0.97859 0.93071 1.01674 1.21518 0.97947 0.96988 0.98805 1.21432 0.97882 0.97381 0.98308 1.22220 0.97905 0.94968 1.03281 1.21867 0.91042 0.96660 0.85666 0.92874 1.86651 1.37334 1.95359 1.17615 1.22054 0.96049 0.98665 0.89500 1.21582 0.97847 0.94031 1.00918 0.92926 0.99644 0.99630 0.93373 0.93801 0.92608 0.95461 0.89717 0.92429 0.92329 0.91588 0.91165 0.90824 0.92123 0.90612 0.90047 0.76849 0.95049 0.89679 0.92022 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.79 13.29 21.45 0.28 -58.51 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.53 -30.92 8.44 25.60 0.22 -30.71 16 8 H 0.06 3.36 7.09 -2.92 -0.02 3.34 16 9 C 0.03 1.90 4.45 29.85 0.13 2.04 16 10 C -0.07 -3.21 2.20 -10.71 -0.02 -3.24 16 11 C -0.09 -3.64 5.15 30.65 0.16 -3.48 16 12 C 0.07 2.09 4.85 86.33 0.42 2.51 16 13 N -0.54 -15.95 4.39 -871.12 -3.82 -19.77 16 14 C 0.09 2.10 1.78 44.91 0.08 2.18 16 15 H 0.05 1.13 8.08 -2.39 -0.02 1.11 16 16 C -0.10 -2.20 5.07 30.59 0.16 -2.05 16 17 C -0.11 -1.81 5.92 30.59 0.18 -1.62 16 18 C -0.11 -1.59 5.78 30.60 0.18 -1.41 16 19 C -0.15 -2.01 5.63 30.58 0.17 -1.84 16 20 C 0.11 2.10 2.44 30.58 0.07 2.17 16 21 H 0.05 1.06 6.21 -2.38 -0.01 1.05 16 22 O -0.56 -12.36 11.63 -148.98 -1.73 -14.09 16 23 C 0.06 1.95 5.30 86.32 0.46 2.41 16 24 C -0.11 -3.94 5.38 30.65 0.16 -3.77 16 25 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 26 H -0.01 -0.89 8.14 -2.39 -0.02 -0.90 16 27 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 28 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 29 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.06 2.35 7.06 -2.39 -0.02 2.34 16 31 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.08 2.44 5.66 -2.39 -0.01 2.43 16 33 H 0.06 1.23 6.58 -2.39 -0.02 1.22 16 34 H 0.06 1.52 7.68 -2.39 -0.02 1.51 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.06 0.99 7.68 -2.39 -0.02 0.97 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.38 5.25 9.08 -74.06 -0.67 4.58 16 42 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.08 2.25 6.40 -2.39 -0.02 2.24 16 44 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.40 333.71 -0.14 -68.54 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.27 Total: 13.08 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 2.83 Total: -36.52 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -3.54 Total: -78.28 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -1.73 Total: -14.09 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -68.40 -0.14 -68.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335384056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.116 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds